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Volumn 186, Issue 9, 2004, Pages 2810-2817

Haloviruses HF1 and HF2: Evidence for a Recent and Large Recombination Event

Author keywords

[No Author keywords available]

Indexed keywords

TRANSFER RNA; VIRUS DNA;

EID: 1942475398     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.186.9.2810-2817.2004     Document Type: Article
Times cited : (57)

References (48)
  • 1
    • 0031680647 scopus 로고    scopus 로고
    • His1, an archaeal virus of the Fuselloviridae family that infects Haloarcula hispanica
    • Bath, C., and M. L. Dyall-Smith. 1998. His1, an archaeal virus of the Fuselloviridae family that infects Haloarcula hispanica. J. Virol. 72:9392-9395.
    • (1998) J. Virol. , vol.72 , pp. 9392-9395
    • Bath, C.1    Dyall-Smith, M.L.2
  • 2
    • 0035153828 scopus 로고    scopus 로고
    • Comparative phage genomics and the evolution of Siphoviridae: Insights from dairy phages
    • Brussow, H., and F. Desiere. 2001. Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages. Mol. Microbiol. 39:213-222.
    • (2001) Mol. Microbiol. , vol.39 , pp. 213-222
    • Brussow, H.1    Desiere, F.2
  • 3
    • 0037059610 scopus 로고    scopus 로고
    • Phage genomics: Small is beautiful
    • Brussow, H., and R. W. Hendrix. 2002. Phage genomics: small is beautiful. Cell 108:13-16.
    • (2002) Cell , vol.108 , pp. 13-16
    • Brussow, H.1    Hendrix, R.W.2
  • 4
    • 0000332222 scopus 로고
    • Evolution of dsDNA tailed-bacteriophage genomes
    • Casjens, S., G. Hatfull, and R. Hendrix. 1992. Evolution of dsDNA tailed-bacteriophage genomes. Semin. Virol. 3:383-397.
    • (1992) Semin. Virol. , vol.3 , pp. 383-397
    • Casjens, S.1    Hatfull, G.2    Hendrix, R.3
  • 6
    • 0024730742 scopus 로고
    • Transformation of the archaebacterium Halobacterium volcanii with genomic DNA
    • Cline, S. W., L. C. Schalkwyk, and W. F. Doolittle. 1989. Transformation of the archaebacterium Halobacterium volcanii with genomic DNA. J. Bacteriol. 171:4987-4991.
    • (1989) J. Bacteriol. , vol.171 , pp. 4987-4991
    • Cline, S.W.1    Schalkwyk, L.C.2    Doolittle, W.F.3
  • 7
    • 0024994056 scopus 로고
    • Ecophysiology of bacteriophage S5100 infecting Halobacterium cutirubrum
    • Daniels, L. L., and A. C. Wais. 1990. Ecophysiology of bacteriophage S5100 infecting Halobacterium cutirubrum. Appl. Environ. Microbiol. 56:3605-3608.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 3605-3608
    • Daniels, L.L.1    Wais, A.C.2
  • 8
    • 0021187209 scopus 로고
    • Restriction and modification of halophage S45 in Halobacterium
    • Daniels, L. L., and A. C. Wais. 1984. Restriction and modification of halophage S45 in Halobacterium. Curr. Microbiol. 10:133-136.
    • (1984) Curr. Microbiol. , vol.10 , pp. 133-136
    • Daniels, L.L.1    Wais, A.C.2
  • 10
    • 0038730764 scopus 로고    scopus 로고
    • The diversity and evolution of the T4-type bacteriophages
    • Desplats, C., and H. M. Krisch. 2003. The diversity and evolution of the T4-type bacteriophages. Res. Microbiol. 154:259-267.
    • (2003) Res. Microbiol. , vol.154 , pp. 259-267
    • Desplats, C.1    Krisch, H.M.2
  • 11
    • 0025886466 scopus 로고
    • A constant rate of spontaneous mutation in DNA-based microbes
    • Drake, J. W. 1991. A constant rate of spontaneous mutation in DNA-based microbes. Proc. Natl. Acad. Sci. USA 88:7160-7164.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 7160-7164
    • Drake, J.W.1
  • 12
    • 0037716583 scopus 로고    scopus 로고
    • Haloarchaeal viruses: How diverse are they?
    • Dyall-Smith, M., S. L. Tang, and C. Bath. 2003. Haloarchaeal viruses: how diverse are they? Res. Microbiol. 154:309-313.
    • (2003) Res. Microbiol. , vol.154 , pp. 309-313
    • Dyall-Smith, M.1    Tang, S.L.2    Bath, C.3
  • 13
    • 0032810166 scopus 로고    scopus 로고
    • Displacement of cellular proteins by functional analogues from plasmids or viruses could explain puzzling phylogenies of many DNA informational proteins
    • Forterre, P. 1999. Displacement of cellular proteins by functional analogues from plasmids or viruses could explain puzzling phylogenies of many DNA informational proteins. Mol. Microbiol. 33:457-465.
    • (1999) Mol. Microbiol. , vol.33 , pp. 457-465
    • Forterre, P.1
  • 15
    • 0842269911 scopus 로고    scopus 로고
    • Taxonomic characterization of Haloferax sp. ("H. alicantei") strain Aa 2.2: Description of Haloferax lucentensis sp. nov.
    • Gutierrez, M. C., M. Kamekura, M. L. Holmes, M. L. Dyall-Smith, and A. Ventosa. 2002. Taxonomic characterization of Haloferax sp. ("H. alicantei") strain Aa 2.2: description of Haloferax lucentensis sp. nov. Extremophiles 6:479-483.
    • (2002) Extremophiles , vol.6 , pp. 479-483
    • Gutierrez, M.C.1    Kamekura, M.2    Holmes, M.L.3    Dyall-Smith, M.L.4    Ventosa, A.5
  • 16
    • 0026589426 scopus 로고
    • DNA sequences of the tail fiber genes of bacteriophage P2: Evidence for horizontal transfer of tail fiber genes among unrelated bacteriophages
    • Haggard-Ljungquist, E., C. Halling, and R. Calendar. 1992. DNA sequences of the tail fiber genes of bacteriophage P2: evidence for horizontal transfer of tail fiber genes among unrelated bacteriophages. J. Bacteriol. 174:1462-1477.
    • (1992) J. Bacteriol. , vol.174 , pp. 1462-1477
    • Haggard-Ljungquist, E.1    Halling, C.2    Calendar, R.3
  • 18
    • 0033514996 scopus 로고    scopus 로고
    • Evolutionary relationships among diverse bacteriophages and prophages: All the world's a phage
    • Hendrix, R. W., M. C. Smith, R. N. Burns, M. E. Ford, and G. F. Hatfull. 1999. Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage. Proc. Natl. Acad. Sci. USA 96:2192-2197.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 2192-2197
    • Hendrix, R.W.1    Smith, M.C.2    Burns, R.N.3    Ford, M.E.4    Hatfull, G.F.5
  • 19
    • 0031572283 scopus 로고    scopus 로고
    • Defects in concatemer processing of bacteriophage T7 DNA deleted in the M-hairpin region
    • Kim, J. S., S. H. Kim, and Y. B. Chung. 1997. Defects in concatemer processing of bacteriophage T7 DNA deleted in the M-hairpin region. Virology 236:37-46.
    • (1997) Virology , vol.236 , pp. 37-46
    • Kim, J.S.1    Kim, S.H.2    Chung, Y.B.3
  • 20
    • 0036360431 scopus 로고    scopus 로고
    • Natrialba magadii virus ΦCh1: First complete nucleotide sequence and functional organization of a virus infecting a haloalkaliphilic archaeon
    • Klein, R., U. Baranyi, N. Rossler, B. Greineder, H. Scholz, and A. Witte. 2002. Natrialba magadii virus ΦCh1: first complete nucleotide sequence and functional organization of a virus infecting a haloalkaliphilic archaeon. Mol. Microbiol. 45:851-863.
    • (2002) Mol. Microbiol. , vol.45 , pp. 851-863
    • Klein, R.1    Baranyi, U.2    Rossler, N.3    Greineder, B.4    Scholz, H.5    Witte, A.6
  • 21
    • 0034625235 scopus 로고    scopus 로고
    • The impact of comparative genomics on our understanding of evolution
    • Koonin, E. V., L. Aravind, and A. S. Kondrashov. 2000. The impact of comparative genomics on our understanding of evolution. Cell 101:573-576.
    • (2000) Cell , vol.101 , pp. 573-576
    • Koonin, E.V.1    Aravind, L.2    Kondrashov, A.S.3
  • 22
    • 0030809629 scopus 로고    scopus 로고
    • Selfish operons and speciation by gene transfer
    • Lawrence, J. G. 1997. Selfish operons and speciation by gene transfer. Trends Microbiol. 5:355-359.
    • (1997) Trends Microbiol. , vol.5 , pp. 355-359
    • Lawrence, J.G.1
  • 23
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T. M., and S. R. Eddy. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 24
    • 0034801343 scopus 로고    scopus 로고
    • The genome of archaeal prophage ΨM100 encodes the lytic enzyme responsible for autolysis of Methanothermobacter wolfeii
    • Luo, Y., P. Pfister, T. Leisinger, and A. Wasserfallen. 2001. The genome of archaeal prophage ΨM100 encodes the lytic enzyme responsible for autolysis of Methanothermobacter wolfeii. J. Bacteriol. 183:5788-5792.
    • (2001) J. Bacteriol. , vol.183 , pp. 5788-5792
    • Luo, Y.1    Pfister, P.2    Leisinger, T.3    Wasserfallen, A.4
  • 25
    • 0023829903 scopus 로고
    • 'DNA Strider': A 'C' program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers
    • Marck, C. 1988. 'DNA Strider': a 'C' program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers. Nucleic Acids Res. 16:1829-1836.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 1829-1836
    • Marck, C.1
  • 26
    • 0021101102 scopus 로고
    • An efficient method for finding repeats in molecular sequences
    • Martinez, H. M. 1983. An efficient method for finding repeats in molecular sequences. Nucleic Acids Res. 11:4629-4634.
    • (1983) Nucleic Acids Res. , vol.11 , pp. 4629-4634
    • Martinez, H.M.1
  • 27
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Mathews, D. H., J. Sabina, M. Zuker, and D. H. Turner. 1999. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288:911-940.
    • (1999) J. Mol. Biol. , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 29
    • 0028932073 scopus 로고
    • Halophage HF2: Genome organization and replication strategy
    • Nuttall, S. D., and M. L. Dyall-Smith. 1995. Halophage HF2: genome organization and replication strategy. J. Virol. 69:2322-2327.
    • (1995) J. Virol. , vol.69 , pp. 2322-2327
    • Nuttall, S.D.1    Dyall-Smith, M.L.2
  • 30
    • 0027374807 scopus 로고
    • HF1 and HF2: Novel bacteriophages of halophilic archaea
    • Nuttall, S. D., and M. L. Dyall-Smith. 1993. HF1 and HF2: novel bacteriophages of halophilic archaea. Virology 197:678-684.
    • (1993) Virology , vol.197 , pp. 678-684
    • Nuttall, S.D.1    Dyall-Smith, M.L.2
  • 31
    • 0031196664 scopus 로고    scopus 로고
    • Occurrence of virus-like particles in the Dead Sea
    • Oren, A., G. Bratbak, and M. Heldal. 1997. Occurrence of virus-like particles in the Dead Sea. Extremophiles 1:143-149.
    • (1997) Extremophiles , vol.1 , pp. 143-149
    • Oren, A.1    Bratbak, G.2    Heldal, M.3
  • 32
    • 0036300881 scopus 로고    scopus 로고
    • Complete nucleotide sequence and likely recombinatorial origin of bacteriophage T3
    • Pajunen, M. I., M. R. Elizondo, M. Skurnik, J. Kieleczawa, and I. J. Molineux. 2002. Complete nucleotide sequence and likely recombinatorial origin of bacteriophage T3. J. Mol. Biol. 319:1115-1132.
    • (2002) J. Mol. Biol. , vol.319 , pp. 1115-1132
    • Pajunen, M.I.1    Elizondo, M.R.2    Skurnik, M.3    Kieleczawa, J.4    Molineux, I.J.5
  • 33
    • 0026059368 scopus 로고
    • Complete nucleotide sequence of the virus SSV1 of the archaebacterium Sulfolobus shibatae
    • Palm, P., C. Schleper, B. Grampp, S. Yeats, P. McWilliam, W. D. Reiter, and W. Zillig. 1991. Complete nucleotide sequence of the virus SSV1 of the archaebacterium Sulfolobus shibatae. Virology 185:242-250.
    • (1991) Virology , vol.185 , pp. 242-250
    • Palm, P.1    Schleper, C.2    Grampp, B.3    Yeats, S.4    McWilliam, P.5    Reiter, W.D.6    Zillig, W.7
  • 34
    • 0035694680 scopus 로고    scopus 로고
    • Sequences and replication of genomes of the archaeal rudiviruses SIRV1 and SIRV2: Relationships to the archaeal lipothrixvirus SIFV and some eukaryal viruses
    • Peng, X., H. Blum, Q. She, S. Mallok, K. Brugger, R. A. Garrett, W. Zillig, and D. Prangishvili. 2001. Sequences and replication of genomes of the archaeal rudiviruses SIRV1 and SIRV2: relationships to the archaeal lipothrixvirus SIFV and some eukaryal viruses. Virology 291:226-234.
    • (2001) Virology , vol.291 , pp. 226-234
    • Peng, X.1    Blum, H.2    She, Q.3    Mallok, S.4    Brugger, K.5    Garrett, R.A.6    Zillig, W.7    Prangishvili, D.8
  • 36
    • 0035006181 scopus 로고    scopus 로고
    • Viruses of the extremely thermophilic archaeon Sulfolobus
    • Prangishvili, D., K. Stedman, and W. Zillig. 2001. Viruses of the extremely thermophilic archaeon Sulfolobus. Trends Microbiol. 9:39-43.
    • (2001) Trends Microbiol. , vol.9 , pp. 39-43
    • Prangishvili, D.1    Stedman, K.2    Zillig, W.3
  • 37
    • 0028295929 scopus 로고
    • Gene regulation in halophage ΦH - More than promoters
    • Stolt, P., and W. Zillig. 1994. Gene regulation in halophage ΦH-more than promoters. Syst. Appl. Microbiol. 16:591-596.
    • (1994) Syst. Appl. Microbiol. , vol.16 , pp. 591-596
    • Stolt, P.1    Zillig, W.2
  • 39
    • 0003012234 scopus 로고
    • Classification of non-alkaliphilic halobacteria based on numerical taxonomy and polar lipid composition, and description of Haloarcula gen. nov. and Haloferax gen. nov.
    • Torreblanca, M., F. Rodriguez-Valera, G. Juez, A. Ventosa, M. Kamekura, and M. Kates. 1986. Classification of non-alkaliphilic halobacteria based on numerical taxonomy and polar lipid composition, and description of Haloarcula gen. nov. and Haloferax gen. nov. Syst. Appl. Microbiol. 8:89-99.
    • (1986) Syst. Appl. Microbiol. , vol.8 , pp. 89-99
    • Torreblanca, M.1    Rodriguez-Valera, F.2    Juez, G.3    Ventosa, A.4    Kamekura, M.5    Kates, M.6
  • 40
    • 0038286812 scopus 로고
    • Characterization of four bacteriophages for Halobacterium, with special emphasis on phage Hs1
    • O. Kandler (ed.). Gustav Fischer, Stuttgart, Germany
    • Torsvik, T. 1982. Characterization of four bacteriophages for Halobacterium, with special emphasis on phage Hs1, p. 351. In O. Kandler (ed.), Archaebacteria. Gustav Fischer, Stuttgart, Germany.
    • (1982) Archaebacteria , pp. 351
    • Torsvik, T.1
  • 41
    • 0016336408 scopus 로고
    • Bacteriophage of Halobacterium salinarium
    • Torsvik, T., and I. D. Dundas. 1974. Bacteriophage of Halobacterium salinarium. Nature 248:680-681.
    • (1974) Nature , vol.248 , pp. 680-681
    • Torsvik, T.1    Dundas, I.D.2
  • 42
    • 0345188663 scopus 로고    scopus 로고
    • Proposal to transfer Halococcus turkmenicus, Halobacterium trapanicum JCM 9743 and strain GSL-11 to Haloterrigena turkmenica gen. nov., comb. nov.
    • Ventosa, A., M. C. Gutierrez, M. Kamekura, and M. L. Dyall-Smith. 1999. Proposal to transfer Halococcus turkmenicus, Halobacterium trapanicum JCM 9743 and strain GSL-11 to Haloterrigena turkmenica gen. nov., comb. nov. Int. J. Syst. Bacteriol. 49:131-136.
    • (1999) Int. J. Syst. Bacteriol. , vol.49 , pp. 131-136
    • Ventosa, A.1    Gutierrez, M.C.2    Kamekura, M.3    Dyall-Smith, M.L.4
  • 43
    • 0022350468 scopus 로고
    • Populations of bacteriophage infecting Halobacterium in a transient brine pool
    • Wais, A. C., and L. L. Daniels. 1985. Populations of bacteriophage infecting Halobacterium in a transient brine pool. FEMS Microbiol. Ecol. 31:323-326.
    • (1985) FEMS Microbiol. Ecol. , vol.31 , pp. 323-326
    • Wais, A.C.1    Daniels, L.L.2
  • 44
    • 0016800193 scopus 로고
    • Salt-dependent bacteriophage infecting Halobacterium cutirubrum and H. halobium
    • Wais, A. C., M. Kon, R. E. MacDonald, and B. D. Stollar. 1975. Salt-dependent bacteriophage infecting Halobacterium cutirubrum and H. halobium. Nature 256:314-315.
    • (1975) Nature , vol.256 , pp. 314-315
    • Wais, A.C.1    Kon, M.2    MacDonald, R.E.3    Stollar, B.D.4
  • 45
    • 0018873836 scopus 로고
    • A square bacterium
    • Walsby, A. E. 1980. A square bacterium. Nature (London) 283:69.
    • (1980) Nature (London) , vol.283 , pp. 69
    • Walsby, A.E.1
  • 46
    • 0020714456 scopus 로고
    • Rapid similarity searches of nucleic acid and protein data banks
    • Wilbur, W. J., and D. J. Lipman. 1983. Rapid similarity searches of nucleic acid and protein data banks. Proc. Natl. Acad. Sci. USA 80:726-730.
    • (1983) Proc. Natl. Acad. Sci. USA , vol.80 , pp. 726-730
    • Wilbur, W.J.1    Lipman, D.J.2
  • 47
    • 0014328849 scopus 로고
    • The lattice spacing of crystalline catalase as an internal standard of length in electron microscopy
    • Wrigley, N. G. 1968. The lattice spacing of crystalline catalase as an internal standard of length in electron microscopy. J. Ultrastruct. Res. 24:454-464.
    • (1968) J. Ultrastruct. Res. , vol.24 , pp. 454-464
    • Wrigley, N.G.1
  • 48
    • 0001541652 scopus 로고
    • Viruses of archaebacteria
    • R. Calendar (ed.). Plenum Publishing Corp., New York, N.Y.
    • Zillig, W., W.-D. Reiter, P. Palm, F. Gropp, H. Neumann, and M. Rettenberger. 1988. Viruses of archaebacteria, p. 517-558. In R. Calendar (ed.), The bacteriophages, vol. 1. Plenum Publishing Corp., New York, N.Y.
    • (1988) The Bacteriophages , vol.1 , pp. 517-558
    • Zillig, W.1    Reiter, W.-D.2    Palm, P.3    Gropp, F.4    Neumann, H.5    Rettenberger, M.6


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