Sexual Conjugation in Yeast: A Paradigm to Study G-Protein-Coupled Receptor Domain Structure

Biopolymers - Peptide Science Section

Volumn 76, Issue 2, 2004, Pages 119-128

  Naider, Fred ^a,b   Estephan, Racha ^a,b   Englander, Jacqueline ^a   Suresh Babu, V V ^a,d   Arevalo, Enrique ^a,e   Samples, Karen ^c   Becker, Jeffrey M ^c  

^a CITY UNIVERSITY OF NEW YORK   (United States)

^b CITY UNIVERSITY OF NEW YORK   (United States)

^c UNIVERSITY OF TENNESSEE   (United States)

^d BANGALORE UNIVERSITY   (India)

^e MASSACHUSETTS GENERAL HOSPITAL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DIPLOID CELLS; HAPLOIDS;

CELLS; CONCENTRATION (PROCESS); DATA REDUCTION; PROTEINS; SYNTHESIS (CHEMICAL); YEAST;

BIOPOLYMERS;

G PROTEIN COUPLED RECEPTOR; PROTEIN STE2P; UNCLASSIFIED DRUG;

CELL FUSION; CONFERENCE PAPER; HYDROPHOBICITY; MOLECULAR RECOGNITION; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; PROTEIN SYNTHESIS; SACCHAROMYCES CEREVISIAE;

AMINO ACID SEQUENCE; CIRCULAR DICHROISM; CONJUGATION, GENETIC; ESCHERICHIA COLI; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, TERTIARY; RECEPTORS, G-PROTEIN-COUPLED; RECOMBINANT FUSION PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 1942435227     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/bip.10567     Document Type: Conference Paper

References (38)

1. Palczewski, K.; Kumasaka, T.; Hori, T.; Behnke, C. A.; Motoshima, H.; Fox, B. A.; Le Trong. I.; Teller, D. C.; Okada, T.; Stenkamp, R. E.; Yamamoto, M.; Miyano, M. Crystal structure of rhodopsin: A G protein-coupled receptor. Science 2000, 289, 739-745.
2. Fredriksson, R.; Lagerstrom, M. C.; Lundin, L. G.; Schioth, H. B. The G-protein-coupled receptors in the human genome form five main families. Phylogenetic analysis, paralogon groups, and fingerprints. Mol Pharmacol 2003, 63, 1256-1272.
3. Tugarinov, V.; Muhandiram, R.; Ayed, A.; Kay, L. E. Four-dimensional NMR spectroscopy of a 723-residue protein: Chemical shift assignments and secondary structure of malate synthase g. J Am Chem Soc 2002, 124, 10025-10035.
4. Fiaux, J.; Bertelsen, E. B.; Horwich, A. L.; Wuthrich, K. NMR analysis of a 900K GroEL GroES complex. Nature 2002, 418, 207-211.
5. Kelly, M. J.; Ball, L. J.; Krieger, C.; Yu, Y.; Fischer, M.; Schiffmann, S.; Schmieder, P.; Kuhne, R.; Bermel, W.; Bacher, A.; Richter, G.; Oschkinat, H. The NMR structure of the 47-kDa dimeric enzyme 3, 4-dihydroxy-2-butanone-4-phosphate synthase and ligand binding studies reveal the location of the active site. Proc Natl Acad Sci USA 2001, 98, 13025-13030.
6. Garrett, D. S.; Seok, Y. J.; Peterkofsky, A.; Gronenborn, A. M.; Clore, G. M. Solution structure of the 40, 000 Mr phosphoryl transfer complex between the N-terminal domain of enzyme I and HPr. Nat Struct Biol 1999, 6, 166-173.
7. Hunt, J. F.; Earnest, T. N.; Bousche, O.; Kalghatgi, K.; Reilly, K.; Horvath, C.; Rothschild, K. J.; Engelman, D. M. A biophysical study of integral membrane protein folding. Biochemistry 1997, 36, 15156-15176.
8. Yeagle, P. L.; Albert, A. D. Use of nuclear magnetic resonance to study the three-dimensional structure of rhodopsin. Methods Enzymol 2002, 343, 223-231.
9. Xie, H.; Ding, F. X.; Schreiber, D.; Eng, G.; Liu, S. F.; Arshava, B.; Arevalo, E.; Becker, J. M.; Naider, F. Synthesis and biophysical analysis of transmembrane domains of a Saccharomyces cerevisiae G protein-coupled receptor. Biochemistry 2000, 39, 15462-15474.
10. Arshava, B.; Taran, I.; Xie, H.; Becker, J. M.; Naider, F. High-resolution NMR analysis of the seven transmembrane domains of a heptahelical receptor in organic-aqueous medium. Biopolymers 2002, 64, 161-176.
11. Naider, F.; Arshava, B.; Ding, F. X.; Arevalo, E.; Becker, J. M. Peptide fragments as models to study the structure of a G-protein coupled receptor: The alpha-factor receptor of Saccharomyces cerevisiae. Biopolymers 2001, 60, 334-350.
12. Yeagle, P. L.; Choi, G.; Albert, A. D. Studies on the structure of the G-protein-coupled receptor rhodopsin including the putative G-protein binding site in unactivated and activated forms. Biochemistry 2001, 40, 11932-11937.
13. Katragadda, M.; Alderfe, R J. L.; Yeagle, P. L. Assembly of a polytopic membrane protein structure from the solution structures of overlapping peptide fragments of bacteriorhodopsin. Biophys J 2001, 81, 1029-1036.
14. Dohlman, H. G.; Thorner, J.; Caron, M. G.; Lefkowitz, R. J. Model systems for the study of seven-transmem-brane-segment receptors. Annu Rev Biochem 1991, 60, 653-688.
15. Cartwright, C. P.; Tipper, D. J. In vivo topological analysis of Ste2, a yeast plasma membrane protein, by using beta-lactamase gene fusions. Mol Cell Biol 1991, 11, 2620-2628.
16. Ding, F. X.; Xie, H.; Arshava, B.; Becker, J. M.; Naider F. ATR-FTIR study of the structure and orientation of transmembrane domains of the Saccharomyces cerevisiae α-mating factor receptor in phospholipids. Biochemistry 2001, 40, 8945-8954.
17. Ding, F. X.; Schreiber, D.; VerBerkmoes, N. C.; Becker, J. M.; Naider F. The chain length dependence of helix formation of the second transmembrane domain of a G protein-coupled receptor of Saccharomyces cerevisiae. J Biol Chem 2002, 277, 14483-14492.
18. Hojo, A.; Aimoto, S. Polypeptide synthesis using the S-alkyl thioester of a partially protected peptide segment. Synthesis of the DNA-binding domain of c-Myb protein (142-193)-NH2. Bull Chem Soc Jpn 1991, 64, 111-117.
19. Zhang, L.; Tam, J. P. Lactone and lactam library synthesis by silver ion-assisted orthogonal cyclization of unprotected peptides J Am Chem Soc 1999, 121, 3311-3320.
20. Schnolzer, M.; Alewood, P.; Jones, A.; Alewood, D.; Kent S. B. In situ neutralization in Boc-chemistry solid phase peptide synthesis. Rapid, high yield assembly of difficult sequences. Int J Pept Prot Res 1992, 40, 180-193.
21. Futaki, S.; Sogawa, K.; Maruyama, J.; Asahara, T.; Niwa, M. Preparation of peptide thioesters using Fmoc-solid phase peptide synthesis and its application to the construction of a template assembled synthetic protein (TASP). Tetrahedron Lett 1997, 38, 6237-6240.
22. Eggelkraut-Gottanka, van R.; Klose, A.; Beck-Sickinger, A. G.; Beyermann, M. Peptide alpha-thioester formation using standard Fmoc-chemistry. Tetrahedron Lett 2003, 44, 3551-3554.
23. Dawson, P. E.; Kent, S. B. Synthesis of native proteins by chemical ligation. Annu Rev Biochem 2000, 69, 923-960.
24. Tam, J. P.; Xu, J.; Eom, K. D. Methods and strategies of peptide ligation. Biopolymers 2001, 60, 194-205.
25. Arevalo, E.; Estephan, R.; Madeo, J.; Arshava, B.; Dumont, M.; Becker, J. M.; Naider, F. Biosynthesis and biophysical analysis of domains of a yeast G protein-coupled receptor. Biopolymer 2003, 71, 516-531.
26. Miozzari, G. F.; Yanofsky, C. Translation of the leader region of the Escherichia coli tryptophan operon. J Bacteriol 1978, 133, 1457-1466.
27. Kleid, D. G.; Yansura, D.; Small, B.; Dowbenko, D.; Moore, D. M.; Grubman, M. J.; McKercher, P. D.; Morgan, D. O.; Robertson, B. H.; Bachrach, H. L. Cloned viral protein vaccine for foot-and-mouth disease: responses in cattle and swine. Science 1981, 214, 1125-1129.
28. Martin, N. P.; Leavitt, L. M.; Sommers, C. M.; Dumont, M. Assembly of G protein-coupled receptors from fragments: identification of functional receptors with discontinuities in each of the loops connecting transmembrane segments. Biochemistry 1999, 38, 682-695.
29. Marley, J.; Lu, M.; Bracken, C. A method for efficient isotopic labeling of recombinant proteins. J Biomol NMR 2001, 20, 71-75.
30. Staley, J. P.; Kim, P. S. Formation of a native-like subdomain in a partially folded intermediate of bovine pancreatic trypsin inhibitor. Prot Sci 1994, 3, 1822-1832.
31. David, N. E.; Gee, M.; Andersen, B.; Naider, F.; Thorner, J.; Stevens, R. C. Expression and purification of the Saccharomyces cerevisiae α-factor receptor (Ste2p), a 7-transmembrane-segment G protein-coupled receptor. J Biol Chem 1997, 272, 15553-15561.
32. Marti, T. Refolding of bacteriorhodopsin from expressed polypeptide fragments. J Biol Chem 1998, 273, 9312-9322.
33. Martin, N. P.; Celic, A.; Dumont, M. E. Mutagenic mapping of helical structures in the transmembrane segments of the yeast α-factor receptor. J Mol Biol 2002, 317, 765-788.
34. Dawson. P. Chemical ligation, in Houben-Weyl Methods of Organic Chemistry, 2002; Vol. 22a, pp. 627-641.
35. Kochendoerfer, G. G.; Salom, D.; Lear, J. D.; Wilk-Orescan, R.; Kent, S. B. DeGrado W. F. Total chemical synthesis of the integral membrane protein influenza A virus M2: Role of its C-terminal domain in tetramer assembly. Biochemistry 1999, 38, 11905-11913.
36. Bianchi, E.; Ingenito, R.; Simon, R. J.; Pessi, A. Engineering and chemical synthesis of a transmembrane protein: The HCV protease cofactor protein NS4A. J Am Chem Soc 1999, 121, 7698-7699.
37. Valiyaveetil, F. I.; Mackinnon, R.; Muir, T. W. Semi-synthesis and folding of the potassium channel KcsA. J Am Chem Soc 2002, 124, 9113-9120.
38. Muir, T. W.; Sondhi, D.; Col, E. P. A. Expressed protein ligation: A general method for protein engineering. Proc Natl Acad Sci USA 1998, 95, 6705-6710.