메뉴 건너뛰기




Volumn 33, Issue 9, 2005, Pages 2781-2791

Unusual features of fibrillarin cDNA and gene structure in Euglena gracilis: Evolutionary conservation of core proteins and structural predictions for methylation-guide box C/D snoRNPs throughout the domain Eucarya

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE; COMPLEMENTARY DNA; CORE PROTEIN; FIBRILLARIN; GLYCINE; LYSINE; MESSENGER RNA; RIBOSOME RNA; SMALL NUCLEOLAR RIBONUCLEOPROTEIN; NONHISTONE PROTEIN; RIBONUCLEOPROTEIN; SMALL NUCLEAR RNA; U4 SMALL NUCLEAR RNA;

EID: 19144372443     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gki574     Document Type: Article
Times cited : (24)

References (49)
  • 1
    • 0025772874 scopus 로고
    • Short leader sequences may be transferred from small RNAs to pre-mature mRNAs by trans-splicing in Euglena
    • Tessier, L.-H., Keller, M., Chan. R.L., Fournier. R., Weil, J.-H. and Imbault, P. (1991) Short leader sequences may be transferred from small RNAs to pre-mature mRNAs by trans-splicing in Euglena. EMBO J., 10, 2621-2625.
    • (1991) EMBO J. , vol.10 , pp. 2621-2625
    • Tessier, L.-H.1    Keller, M.2    Chan, R.L.3    Fournier, R.4    Weil, J.-H.5    Imbault, P.6
  • 2
    • 0142247085 scopus 로고    scopus 로고
    • Trans and cis splicing in trypanosomatids: Mechanism, factors, and regulation
    • Liang, X.-H., Haritan, S., Uliel, S. and Michaeli, S. (2003) Trans and cis splicing in trypanosomatids: Mechanism, factors, and regulation. Eukaryot. Cell, 2, 830-840.
    • (2003) Eukaryot. Cell , vol.2 , pp. 830-840
    • Liang, X.-H.1    Haritan, S.2    Uliel, S.3    Michaeli, S.4
  • 3
    • 0025339650 scopus 로고
    • Trans splicing of nuclear pre-mRNAs
    • Agabian, N. (1990) Trans splicing of nuclear pre-mRNAs. Cell, 61, 1157-1160.
    • (1990) Cell , vol.61 , pp. 1157-1160
    • Agabian, N.1
  • 4
    • 0032103829 scopus 로고    scopus 로고
    • Gene clusters and polycistronic transcription in eukoryotes
    • Blumenthal, T. (1998) Gene clusters and polycistronic transcription in eukoryotes. BioEssay, 20, 480-487.
    • (1998) BioEssay , vol.20 , pp. 480-487
    • Blumenthal, T.1
  • 5
    • 0025254635 scopus 로고
    • A spliced leader is present on a subset of mRNAs from the human parasite Schistosoma mansoni
    • Rajkovic, A., Davies, R.E., Simonsen, J.N. and Rottman, F.M. (1990) A spliced leader is present on a subset of mRNAs from the human parasite Schistosoma mansoni. Proc. Natl Acad. Sci. USA, 87, 8879-8883.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 8879-8883
    • Rajkovic, A.1    Davies, R.E.2    Simonsen, J.N.3    Rottman, F.M.4
  • 6
    • 0035241992 scopus 로고    scopus 로고
    • mRNA 5′-leader trans-splicing in the chordates
    • Vandenberghe, A.E., Meedel, T.H. and Hastings, K.E.M. (2001) mRNA 5′-leader trans-splicing in the chordates. Genes Dev., 15, 294-303.
    • (2001) Genes Dev. , vol.15 , pp. 294-303
    • Vandenberghe, A.E.1    Meedel, T.H.2    Hastings, K.E.M.3
  • 7
    • 0035826943 scopus 로고    scopus 로고
    • Trans-spliced leader addition to mRNAs in a cnidarian
    • Stover, N.A. and Steele, R.E. (2001) Trans-spliced leader addition to mRNAs in a cnidarian. Proc. Natl Acad. Sci. USA, 98, 5693-5699.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 5693-5699
    • Stover, N.A.1    Steele, R.E.2
  • 9
    • 7044222569 scopus 로고    scopus 로고
    • Chloroplast phosphoglycerate kinase from Euglena gracilis: Endosymbiotic gene replacement going against the tide
    • Nowitzki, U., Gelius-Dietrich, G., Schwieger, M., Henze, K. and Martin W. (2004) Chloroplast phosphoglycerate kinase from Euglena gracilis: endosymbiotic gene replacement going against the tide. Eur. J. Biochem., 271, 4123-4131.
    • (2004) Eur. J. Biochem. , vol.271 , pp. 4123-4131
    • Nowitzki, U.1    Gelius-Dietrich, G.2    Schwieger, M.3    Henze, K.4    Martin, W.5
  • 10
    • 0028874080 scopus 로고
    • Structure and expression of Euglena gracilis nuclear rbcS genes encoding the small subunits of the ribulose 1,5-bisphosphate carboxylase/oxygenase: A novel splicing process for unusual intervening sequences?
    • Tessier, L.H., Paulus, F., Keller, M., Vial, C. and Imbault, P. (1995) Structure and expression of Euglena gracilis nuclear rbcS genes encoding the small subunits of the ribulose 1,5-bisphosphate carboxylase/ oxygenase: A novel splicing process for unusual intervening sequences? J. Mol. Biol., 245, 22-33.
    • (1995) J. Mol. Biol. , vol.245 , pp. 22-33
    • Tessier, L.H.1    Paulus, F.2    Keller, M.3    Vial, C.4    Imbault, P.5
  • 11
    • 0028566565 scopus 로고
    • Characterization of the unique intron-exon junctions of Euglena gene(s) encoding the polyprotein precursor to the light-harvesting chlorophyll a/b binding protein photosystem II
    • Muchhal, U.S. and Schwartzbach, S.D. (1994) Characterization of the unique intron-exon junctions of Euglena gene(s) encoding the polyprotein precursor to the light-harvesting chlorophyll a/b binding protein photosystem II. Nucleic Acids Res., 22, 5737-5744.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 5737-5744
    • Muchhal, U.S.1    Schwartzbach, S.D.2
  • 13
    • 0035091725 scopus 로고    scopus 로고
    • Analysis of Euglena gracilis alpha-, beta- and gamma-tubulin genes: Introns and pre-mRNA maturation
    • Canaday, J., Tessier, L.H., Imbault, Y. and Paulus, F. (2001) Analysis of Euglena gracilis alpha-, beta- and gamma-tubulin genes: Introns and pre-mRNA maturation, Mol. Genet. Genomics, 265, 153-160.
    • (2001) Mol. Genet. Genomics , vol.265 , pp. 153-160
    • Canaday, J.1    Tessier, L.H.2    Imbault, Y.3    Paulus, F.4
  • 14
    • 0034081813 scopus 로고    scopus 로고
    • Box C/D snoRNA-associated proteins: Two pairs of evolutionarily ancient proteins and possible links to replication and transcription
    • Newman, D.R., Kuhn, J.F., Shanab, G.M. and Maxwell, E.S. (2000) Box C/D snoRNA-associated proteins: Two pairs of evolutionarily ancient proteins and possible links to replication and transcription. RNA, 6, 861-879.
    • (2000) RNA , vol.6 , pp. 861-879
    • Newman, D.R.1    Kuhn, J.F.2    Shanab, G.M.3    Maxwell, E.S.4
  • 15
    • 0033053360 scopus 로고    scopus 로고
    • Nop58p is a common component of the box C+D snoRNPs that is required for snoRNA stability
    • Lafontaine, D.L. and Tollervey, D. (1999) Nop58p is a common component of the box C+D snoRNPs that is required for snoRNA stability. RNA, 5, 455-467.
    • (1999) RNA , vol.5 , pp. 455-467
    • Lafontaine, D.L.1    Tollervey, D.2
  • 16
    • 0030698635 scopus 로고    scopus 로고
    • Nucleolar KKE/D repeat proteins Nop56p and Nop58p interact with Nop1p and are required for ribosome biogenesis
    • Gautier, T., Berges, T., Tollervey, D. and Hurt, E. (1997) Nucleolar KKE/ D repeat proteins Nop56p and Nop58p interact with Nop1p and are required for ribosome biogenesis. Mol. Cell. Biol., 12, 7088-7098.
    • (1997) Mol. Cell. Biol. , vol.12 , pp. 7088-7098
    • Gautier, T.1    Berges, T.2    Tollervey, D.3    Hurt, E.4
  • 18
    • 0037082424 scopus 로고    scopus 로고
    • Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu 13p snoRNP core protein
    • Kuhn, J.F., Tran, E.J. and Maxwell, E.S. (2002) Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu 13p snoRNP core protein. Nucleic Acids Res. 30, 931-941.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 931-941
    • Kuhn, J.F.1    Tran, E.J.2    Maxwell, E.S.3
  • 20
    • 0037324527 scopus 로고    scopus 로고
    • Binding of L7Ae protein to the K-turn of archaeal snoRNAs: A shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea
    • Rozhdestvensky, T.S.. Tang, T.H., Tchirkova, I.V., Brosius, J., Bachellerie, J.-P. and Hüttenhofer, A. (2003) Binding of L7Ae protein to the K-turn of archaeal snoRNAs: A shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea. Nucleic Acids Res., 31, 869-877.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 869-877
    • Rozhdestvensky, T.S.1    Tang, T.H.2    Tchirkova, I.V.3    Brosius, J.4    Bachellerie, J.-P.5    Hüttenhofer, A.6
  • 21
    • 15944384666 scopus 로고    scopus 로고
    • The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus
    • Zago, M.A., Dennis, P.P. and Omer, A.D. (2005) The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus. Mol. Microbiol., 55, 1812-1828.
    • (2005) Mol. Microbiol. , vol.55 , pp. 1812-1828
    • Zago, M.A.1    Dennis, P.P.2    Omer, A.D.3
  • 23
    • 3242771427 scopus 로고    scopus 로고
    • Evolutionary origins of the RNA-guided nucleotide-modification complexes: From the primitive translation apparatus?
    • Tran, E., Brown, J. and Maxwell, E.S. (2004.) Evolutionary origins of the RNA-guided nucleotide-modification complexes: From the primitive translation apparatus? Trends Biochem. Sci., 29, 343-350.
    • (2004) Trends Biochem. Sci. , vol.29 , pp. 343-350
    • Tran, E.1    Brown, J.2    Maxwell, E.S.3
  • 24
    • 3042523704 scopus 로고    scopus 로고
    • Pseudouridine-guide RNAs and other Cbf5p-associated RNAs in Euglena gracilis
    • Russell, A. G., Schnare, M.N. and Gray, M.W. (2004) Pseudouridine-guide RNAs and other Cbf5p-associated RNAs in Euglena gracilis. RNA, 10, 1034-1046.
    • (2004) RNA , vol.10 , pp. 1034-1046
    • Russell, A.G.1    Schnare, M.N.2    Gray, M.W.3
  • 25
    • 0034659940 scopus 로고    scopus 로고
    • Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: Cbf5p in Euglena gracilis, an early diverging eukaryote, and candidate Gar1p and Nop10p homologs in archaebacteria
    • Watanabe, Y.-i. and Gray, M.W. (2000) Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: Cbf5p in Euglena gracilis, an early diverging eukaryote, and candidate Gar1p and Nop10p homologs in archaebacteria. Nucleic Acids Res., 28, 2342-2352.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 2342-2352
    • Watanabe, Y.-I.1    Gray, M.W.2
  • 26
    • 0028213438 scopus 로고
    • Oligo-capping: A simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides
    • Maruyama, K. and Sugano, S. (1994) Oligo-capping: A simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. Gene, 138, 171-174.
    • (1994) Gene , vol.138 , pp. 171-174
    • Maruyama, K.1    Sugano, S.2
  • 31
    • 0030910228 scopus 로고    scopus 로고
    • An unusual fibrillarin gene and protein: Structure and functional implications
    • David, E., McNeil, J.B., Basile, V. and Pearlman R.E. (1997) An unusual fibrillarin gene and protein: Structure and functional implications. Mol. Biol. Cell, 8, 1051-1061.
    • (1997) Mol. Biol. Cell , vol.8 , pp. 1051-1061
    • David, E.1    McNeil, J.B.2    Basile, V.3    Pearlman, R.E.4
  • 32
    • 0022405831 scopus 로고
    • Purification and partial characterization of a nucleolar scleroderma antigen (Mr=34,000; pI, 8.5) rich in NG,NG-dimethylarginine
    • Lischwe, M.A., Ochs, R.L., Reddy, R., Cook, R.G., Yeoman, L.C.. Tan, E.M.. Reichlin, M. and Busch, H. (1985) Purification and partial characterization of a nucleolar scleroderma antigen (Mr=34,000; pI, 8.5) rich in NG,NG-dimethylarginine. J. Biol. Chem., 260, 14304-14310.
    • (1985) J. Biol. Chem. , vol.260 , pp. 14304-14310
    • Lischwe, M.A.1    Ochs, R.L.2    Reddy, R.3    Cook, R.G.4    Yeoman, L.C.5    Tan, E.M.6    Reichlin, M.7    Busch, H.8
  • 33
    • 0038813707 scopus 로고    scopus 로고
    • In vivo analysis of nucleolar proteins modified by the yeast arginine methyltransferase Hmt1/Rmt1p
    • Xu, C., Henry, P.A., Setya, A. and Henry, M.F. (2003) In vivo analysis of nucleolar proteins modified by the yeast arginine methyltransferase Hmt1/Rmt1p. RNA, 6, 746-759.
    • (2003) RNA , vol.6 , pp. 746-759
    • Xu, C.1    Henry, P.A.2    Setya, A.3    Henry, M.F.4
  • 34
    • 0034282647 scopus 로고    scopus 로고
    • Fibrillarin genes encode both a conserved nucleolar protein and a novel small nucleolar RNA involved in ribosomal RNA methylation in Arabidopsis thaliana
    • Barneche, F., Steinmetz, F. and Echeverria, M. (2000) Fibrillarin genes encode both a conserved nucleolar protein and a novel small nucleolar RNA involved in ribosomal RNA methylation in Arabidopsis thaliana. J. Biol. Chem., 275, 27212-27220.
    • (2000) J. Biol. Chem. , vol.275 , pp. 27212-27220
    • Barneche, F.1    Steinmetz, F.2    Echeverria, M.3
  • 35
    • 0030954870 scopus 로고    scopus 로고
    • The transmembrane kinase Ire 1p is a site-specific endonuclease that initiates mRNA splicing in the unfolded protein response
    • Sidrauski, C. and Walter, P. (1997) The transmembrane kinase Ire 1p is a site-specific endonuclease that initiates mRNA splicing in the unfolded protein response. Cell, 90, 1031-1039.
    • (1997) Cell , vol.90 , pp. 1031-1039
    • Sidrauski, C.1    Walter, P.2
  • 36
    • 0030297538 scopus 로고    scopus 로고
    • tRNA ligase is required for regulated mRNA splicing in the unfolded protein response
    • Sidrauski, C., Cox, J.S. and Walter, P. (1996) tRNA ligase is required for regulated mRNA splicing in the unfolded protein response. Cell, 87, 405-413.
    • (1996) Cell , vol.87 , pp. 405-413
    • Sidrauski, C.1    Cox, J.S.2    Walter, P.3
  • 38
    • 0029047354 scopus 로고
    • A nuclear gene of eubacterial origin in Euglena gracilis reflects cryptic endosymbioses during protist evolution
    • Henze, K., Badr, A., Wettern, M., Cerff, R. and Martin, W. (1995) A nuclear gene of eubacterial origin in Euglena gracilis reflects cryptic endosymbioses during protist evolution. Proc. Natl. Acad. Sci. USA, 92, 9122-9126.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 9122-9126
    • Henze, K.1    Badr, A.2    Wettern, M.3    Cerff, R.4    Martin, W.5
  • 39
    • 0036843244 scopus 로고    scopus 로고
    • Recycled plastids: A 'green movement' in eukaryote evolution
    • Archibald, J.M., and Keeling, P.J. (2002) Recycled plastids: A 'green movement' in eukaryote evolution. Trends Genet., 18, 577-584.
    • (2002) Trends Genet. , vol.18 , pp. 577-584
    • Archibald, J.M.1    Keeling, P.J.2
  • 40
    • 0036889385 scopus 로고    scopus 로고
    • Conserved stem II of the box C/D motif is essential for nucleolar localization and is required along with the 15.5K protein, for the hierarchical assembly of the box C/D snoRNP
    • Watkins, N.J., Dickmanns, A. and Lührmann, R. (2002) Conserved stem II of the box C/D motif is essential for nucleolar localization and is required along with the 15.5K protein, for the hierarchical assembly of the box C/D snoRNP. Mol. Cell. Biol, 22, 8342-8352.
    • (2002) Mol. Cell. Biol , vol.22 , pp. 8342-8352
    • Watkins, N.J.1    Dickmanns, A.2    Lührmann, R.3
  • 41
    • 0037117533 scopus 로고    scopus 로고
    • In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex
    • Omer, A.D., Ziesche, S., Ebhardt, H. and Dennis, P.P. (2002) In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex. Proc. Natl Acad. Sci. USA. 99, 5289-5294.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 5289-5294
    • Omer, A.D.1    Ziesche, S.2    Ebhardt, H.3    Dennis, P.P.4
  • 42
    • 1642458391 scopus 로고    scopus 로고
    • Analysis of Snu 13p mutations reveals differential interactions with the U4 snRNA and U3 snoRNA
    • Dobbyn, H.C. and O'Keefe, R.T. (2004) Analysis of Snu 13p mutations reveals differential interactions with the U4 snRNA and U3 snoRNA. RNA, 10, 308-320.
    • (2004) RNA , vol.10 , pp. 308-320
    • Dobbyn, H.C.1    O'Keefe, R.T.2
  • 43
    • 0034509631 scopus 로고    scopus 로고
    • Crystal structure of the spliceosomal 15.5 kD protein bound to a U4 snRNA fragment
    • Vidovic, I., Nottrott, S., Hartmuth, K., Lührmann, R. and Ficner, R. (2000) Crystal structure of the spliceosomal 15.5 kD protein bound to a U4 snRNA fragment. Mol. Cell, 6, 1331-1342.
    • (2000) Mol. Cell , vol.6 , pp. 1331-1342
    • Vidovic, I.1    Nottrott, S.2    Hartmuth, K.3    Lührmann, R.4    Ficner, R.5
  • 44
    • 0033229873 scopus 로고    scopus 로고
    • Functional interaction of a novel 15.5kD [U4/U6.U5] tri-snRNP protein with the 5′ stem-loop of U4 snRNA
    • Nottrott, S., Hartmuth, K., Fabrizio, P.. Urlaub. H., Vidovic, I., Ficner, R. and Lührmann, R. (1999) Functional interaction of a novel 15.5kD [U4/U6.U5] tri-snRNP protein with the 5′ stem-loop of U4 snRNA. EMBO J., 18, 6119-6133.
    • (1999) EMBO J. , vol.18 , pp. 6119-6133
    • Nottrott, S.1    Hartmuth, K.2    Fabrizio, P.3    Urlaub, H.4    Vidovic, I.5    Ficner, R.6    Lührmann, R.7
  • 45
    • 2342638215 scopus 로고    scopus 로고
    • Structure of protein L7 Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8Å resolution
    • Hamma, T. and Ferré-D'Amaré A.R. (2004) Structure of protein L7 Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8Å resolution. Structure (Camb.), 12, 893-903.
    • (2004) Structure (Camb.) , vol.12 , pp. 893-903
    • Hamma, T.1    Ferré-D'Amaré, A.R.2
  • 48
    • 0036773686 scopus 로고    scopus 로고
    • Exclusive interaction of the 15.5 kD protein with the terminal box C/D motif of a methylation guide snoRNP
    • Szewczak, L.B.W., DeGregorio, S.J., Strobel, S.A. and Steitz, J.A. (2002) Exclusive interaction of the 15.5 kD protein with the terminal box C/D motif of a methylation guide snoRNP. Chem. Biol., 9, 1095-1107.
    • (2002) Chem. Biol. , vol.9 , pp. 1095-1107
    • Szewczak, L.B.W.1    DeGregorio, S.J.2    Strobel, S.A.3    Steitz, J.A.4
  • 49
    • 0037099680 scopus 로고    scopus 로고
    • Site-specific cross-linking analyses reveal an asymmetric protein distribution for a box C/D snoRNP
    • Cahill, N.M.. Friend, K., Speckmann, W., Li, Z.-H., Terns, R.M., Terns, M.P. and Steitz, J.A. (2002) Site-specific cross-linking analyses reveal an asymmetric protein distribution for a box C/D snoRNP. EMBO J., 21, 3816-3828,
    • (2002) EMBO J. , vol.21 , pp. 3816-3828
    • Cahill, N.M.1    Friend, K.2    Speckmann, W.3    Li, Z.-H.4    Terns, R.M.5    Terns, M.P.6    Steitz, J.A.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.