Functional display of family 11 endoxylanases on the surface of phage M13

Journal of Biotechnology

Volumn 115, Issue 3, 2005, Pages 249-260

  Belien T ^a   Hertveldt, K ^a   Van Den Brande, K ^a   Robben, J ^b   Van Campenhout, S ^a   Volckaert, G ^a  

^a LABORATORY OF GENE TECHNOLOGY   (Belgium)

^b HASSELT UNIVERSITY   (Belgium)

Author keywords

Aspergillus niger endoxylanase; Bacillus subtilis endoxylanase; Endoxylanase inhibitors; Phage display

Indexed keywords

BINDING ENERGY; ENZYME IMMOBILIZATION; GENES; GENETIC ENGINEERING; HYDROLYSIS; PROTEINS;

ASPERGILLUS NIGER ENDOXYLANASES; BACILLUS SUBTILIS ENDOXYLANASES; ENDOXYLANASES INHIBITORS; PHAGE DISPLAY;

ENZYMES;

ARABINOXYLAN; BACTERIAL ENZYME; COAT PROTEIN; ENDO 1,4 XYLANASE 1; ENDO 1,4 XYLANASE A; ENDO XYLANASE; ENZYME INHIBITOR; FUNGAL ENZYME; HYDROLASE; UNCLASSIFIED DRUG; XYLAN ENDO 1,3 BETA XYLOSIDASE; ENDO 1,4 BETA XYLANASE; MEMBRANE PROTEIN; PEPTIDE LIBRARY; RECOMBINANT PROTEIN;

ARTICLE; ASPERGILLUS NIGER; BACILLUS SUBTILIS; BACTERIOPHAGE M13; CONTROLLED STUDY; ENZYME BINDING; ENZYME LINKED IMMUNOSORBENT ASSAY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHAGE DISPLAY; PHAGEMID; PRIORITY JOURNAL; PROTEIN FAMILY; PROTEIN PROTEIN INTERACTION; PURIFICATION; ENZYMOLOGY; EVALUATION; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; METHODOLOGY; MOLECULAR CLONING; PHYSIOLOGY; PROTEIN ANALYSIS; PROTEIN ENGINEERING;

ASPERGILLUS NIGER; BACILLUS SUBTILIS;

ASPERGILLUS NIGER; BACILLUS SUBTILIS; BACTERIOPHAGE M13; CLONING, MOLECULAR; ENDO-1,4-BETA XYLANASES; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, VIRAL; MEMBRANE PROTEINS; PEPTIDE LIBRARY; PROTEIN ENGINEERING; PROTEIN INTERACTION MAPPING; RECOMBINANT PROTEINS;

EID: 18944399048     PISSN: 01681656     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2004.08.013     Document Type: Article

References (40)

1. M.R. Bedford, and H. Schulze Exogenous enzymes for pigs and poultry Nutr. Res. Rev. 11 1998 91 114
2. J.G. Berrin, G. Williamson, A. Puigserver, J.C. Chaix, W.R. McLauchlan, and N. Juge High-level production of recombinant fungal endo-beta-1,4-xylanase in the methylotrophic yeast Pichia pastoris Protein Expr. Purif. 19 2000 179 187
3. M.M. Bradford A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding Anal. Biochem. 72 1976 248 254
4. A. Cabibbo, E. Sporeno, C. Toniatti, S. Altamura, R. Savino, G. Paonessa, and G. Ciliberto Monovalent phage display of human interleukin (hIL)-6: selection of superbinder variants from a complex molecular repertoire in the hIL-6 D-helix Gene 167 1995 41 47
5. L.R. Ceci, M. Volpicella, Y. Rahbe, R. Gallerani, J. Beekwilder, and M.A. Jongsma Selection by phage display of a variant mustard trypsin inhibitor toxic against aphids Plant J. 33 2003 557 566
6. C. Christophersen, E. Andersen, T.S. Jakobsen, and P.W. Bagsvaerd Xylanases in wheat separation Starch/Stärke 49 1997 5 12
7. L.P. Christov, G. Szakacs, and H. Balakrishnan Production, partial characterization and use of fungal cellulase-free xylanases in pulp-bleaching Process Biochem. 34 1999 511 517
8. C.M. Courtin, and J.A. Delcour Relative activity of endoxylanases towards water-extractable and water-unextractable arabinoxylan J. Cereal. Sci. 33 2001 301 312
9. C.M. Courtin, A. Roelants, and J.A. Delcour Fractionation-reconstitution experiments provide insight into the role of endoxylanases in bread-making J. Agric. Food Chem. 47 1999 1870 1877
10. Debyser, W., 1999. Arabinoxylan solubilisation during the production of Belgian white beer and a novel class of wheat proteins that inhibit endoxylanases. Ph.D. Thesis. K.U.Leuven, Belgium.
11. Debyser, W., Delcour, J.A., 1997. Inhibitors of xylanolytic and b-glucanolytic enzymes. Eur. Pat. Filed April 1997 (Further matter added April 1998, Published as WO 98/49278).
12. W. Debyser, W.J. Peumans, E.J.M. Van Damme, and J.A. Delcour Triticum aestivum xylanase inhibitor (Taxi), a new class of enzyme inhibitor affecting breadmaking performance J. Cereal Sci. 30 1999 39 43
13. A. Fernandez-Gacio, M. Uguen, and J. Fastrez Phage display as a tool for the directed evolution of enzymes Trends Biotechnol. 21 2003 408 414
14. R. Flatman, W.R. McLauchlan, N. Juge, C. Furniss, J.G. Berrin, R.K. Hughes, P. Manzanares, J.E. Ladbury, R. O'Brien, and G. Williamson Interactions defining the specificity between fungal xylanases and the xylanase-inhibiting protein XIP-I from wheat Biochem. J. 365 2002 773 781
15. K. Gebruers, K. Brijs, C.M. Courtin, K. Fierens, H. Goesaert, G. Raedschelders, J. Robben, J.F. Sørensen, S. Van Campenhout, and J.A. Delcour Properties of TAXI-type endoxylanase inhibitors Biochim. Biophys. Acta 1696 2004 213 221
16. K. Gebruers, K. Brijs, C.M. Courtin, H. Goesaert, P. Proost, J. Van Damme, and J.A. Delcour Affinity chromatography with immobilised endoxylanases separates TAXI- and XIP-type endoxylanase inhibitors from wheat (Triticum aestivum L.) J. Cereal Sci. 36 2002 367 375
17. B. Henrissat A classification of glycosyl hydrolases based on amino acid sequence similarities Biochem. J. 280 1991 309 316
18. Hertveldt, K., 2002. Phage display technology in proteome analysis of Saccharomyces cerevisiae. Ph.D. Thesis. K.U.Leuven, Belgium.
19. K. Hertveldt, M.L. Dechassa, J. Robben, and G. Volckaert Identification of Gal80p-interacting proteins by Saccharomyces cerevisiae whole genome phage display Gene 307 2003 141 149
20. K. Hertveldt, J. Robben, and G. Volckaert In vivo selectively infective phage as a tool to detect protein interactions: evaluation of a novel vector system with yeast Ste7p-Fus3p interacting proteins Yeast 19 2002 499 508
21. J.G. Hessing, C. van otterdam, J.M. Verbakel, M. Roza, J. Maat, R.F. van Gorcom, and C.A. van den Hondel Isolation and characterization of a 1,4-beta-endoxylanase gene of A. awamori Curr. Genet. 26 1994 228 232
22. H.R. Hoogenboom, A.D. Griffiths, K.S. Johnson, D.J. Chiswell, P. Hudson, and G. Winter Multi-subunit proteins on the surface of filamentous phage: methodologies for displaying antibody (Fab) heavy and light chains Nucleic Acids Res 19 1991 4133 4137
23. R.M. Horton, H.D. Hunt, S.N. Ho, J.K. Pullen, and L.R. Pease Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension Gene 77 1989 61 68
24. N. Juge, F. Payan, and G. Williamson XIP-I, a xylanase inhibitor protein from wheat: a novel protein function Biochim. Biophys. Acta 1696 2004 203 211
25. B.K. Kay, J. Winter, and J. McCafferty Phage Display of Peptides and Proteins 1996 Academic Press San Diego
26. U. Krengel, and B.W. Dijkstra Three-dimensional structure of Endo-1,4-beta-xylanase I from Aspergillus niger: molecular basis for its low pH optimum J. Mol. Biol. 263 1996 70 78
27. N. Kulkarni, A. Shendye, and M. Rao Molecular and biotechnological aspects of xylanases FEMS Microbiol. Rev. 23 1999 411 456
28. V. Malathi, and G. Devegowda In vitro evaluation of nonstarch polysaccharide digestibility of feed ingredients by enzymes Poultry Sci. 80 2001 302 305
29. W.R. McLauchlan, M.T. Garcia-conesa, G. Williamson, M. Roza, P. Ravestein, and J. Maat A novel class of protein from wheat which inhibits xylanases Biochem. J. 338 1999 441 446
30. J.H. Miller, and A.M. Albertini Effects of surrounding sequence on the suppression of nonsense codons J. Mol. Biol. 164 1983 59 71
31. J. Rakonjac, and P. Model Roles of pIII in filamentous phage assembly J. Mol. Biol. 282 1998 25 41
32. G.P. Smith, and V.A. Petrenko Phage display Chem. Rev. 97 1997 391 410
33. J.F. Sorensen, K.M. Kragh, O. Sibbesen, J. Delcour, H. Goesaert, B. Svensson, T.A. Tahir, J. Brufau, A.M. Perez-Vendrell, D. Bellincampi, R. D'Ovidio, L. Camardella, A. Giovane, E. Bonnin, and N. Juge Potential role of glycosidase inhibitors in industrial biotechnological applications Biochim. Biophys. Acta 1696 2004 275 287
34. W.L. Sung, C.K. Luk, D.M. Zahab, and W. Wakarchuk Overexpression of the Bacillus subtilis and circulans xylanases in Escherichia coli Protein Expr. Purif. 4 1993 200 206
35. A. Törrönen, and J. Rouvinen Structural and functional properties of low molecular weight endo-1,4-beta-xylanases J. Biotechnol. 57 1997 137 149
36. M.K. Tur, M. Huhn, S. Sasse, A. Engert, and S. Barth Selection of scFv phages on intact cells under low pH conditions leads to a significant loss of insert-free phages BioTechniques 30 2001 404 413
37. R.M. Verhaert, J. Beekwilder, R. Olsthoorn, J. van Duin, and W.J. Quax Phage display selects for amylases with improved low pH starch-binding J. Biotechnol. 96 2002 103 118
38. R.J. Viëtor, A.G.J. Voragen, and S.A.G.F. Angelino Composition of non-starch polysaccharides in wort and spent grains from brewing trials with malt from a good malting quality barley and a feed barley J. Institute Brewing 99 1993 243 248
39. M. Volpicella, L.R. Ceci, R. Gallerani, M.A. Jongsma, and J. Beekwilder Functional expression on bacteriophage of the mustard trypsin inhibitor MTI-2 Biochem. Biophys. Res. Commun. 280 2001 813 817
40. G.A. Weiss, C.K. Watanabe, A. Zhong, A. Goddard, and S.S. Sidhu Rapid mapping of protein functional epitopes by combinatorial alanine scanning Proc. Natl. Acad. Sci. U.S.A. 97 2000 8950 8954