Amide I vibrational circular dichroism of polypeptides: Generalized fragmentation approximation method

Journal of Chemical Physics

Volumn 122, Issue 17, 2005, Pages

  Choi, Jun Ho ^a   Kim, Joong Soo ^a   Cho, Minhaeng ^a  

^a Korea University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

ELECTRIC DIPOLES; MAGNETIC DIPOLES; OLIGOPEPTIDES; VIBRATIONAL CIRCULAR DICHROISM (VCD);

ALGORITHMS; APPROXIMATION THEORY; COMPUTER SIMULATION; LIGHT ABSORPTION; PROBABILITY DENSITY FUNCTION; PROTEINS; QUANTUM THEORY; RAMAN SCATTERING;

POLYPEPTIDES;

EID: 18744402758     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.1888390     Document Type: Article

References (46)

1. H. H. Mantsch, H. L. Casal, and R. N. Jones, in Spectroscopy of Biological Systems, Advances in Spectroscopy, edited by, R. J. H. Clark, and, R. E. Hester, (Wiley, New York, 1986), Vol. 13, p. 1.
2. W. K. Surewicz and H. H. Mantsch, in Spectroscopic Methods for Determining Protein Structure in Solution, edited by, H. A. Havel, (VCH, New York, 1996), p. 135.
3. Infrared and Raman Spectroscopy of Biological Materials, edited by, H.-U. Gremlich, and, B. Yan, (Marcel Dekker, New York, 2000).
4. D. M. Byler and H. Susi, Biopolymers 25, 469 (1986).
5. A. Dong, P. Huang, and W. S. Caughey, Biochemistry 29, 3303 (1990).
6. W. K. Surewicz and H. H. Mantsch, Biochim. Biophys. Acta 952, 115 (1988).
7. J. L. R. Arrondo and F. M. Goni, Prog. Biophys. Mol. Biol. 72, 367 (1999).
8. H. H. Mantsch, W. K. Surewicz, and D. Chapman, Biochemistry 32, 389 (1993).
9. S. J. Prestrelski, D. M. Byler, and M. P. Thompson, Biochemistry 30, 8797 (1991).
10. M. Simonetti and C. D. Bello, Biopolymers 62, 95 (2001).
11. H. Torii and M. Tasumi, Infrared Spectroscopy of Biomolecules (Wiley, New York, 1996), p. 1.
12. S. Krimm and J. Bandekar, Adv. Protein Chem. 38, 181 (1986).
13. R. Moritz, H. Fabian, U. Hahn, M. Diem, and D. Naumann, J. Am. Chem. Soc. 124, 6259 (2002).
14. G. Mix, R. Schweitzer-Stenner, and S. A. Asher, J. Am. Chem. Soc. 122, 9028 (2000).
15. S. M. Decatur and J. Antonic, J. Am. Chem. Soc. 121, 11914 (1999).
16. Circular Dichroism, Principles and Applications, edited by, N. Berova, K. Nakamishi, and, R. W. Woody, (Wiley VCH, New York, 2000).
17. F. Eker, X. Cao, L. Nafie, and R. Schweitzer-Stenner, J. Am. Chem. Soc. 124, 14330 (2002).
18. J. Kubelka and T. A. Keiderling, J. Am. Chem. Soc. 123, 12048 (2001).
19. J. Hilario, J. Kubelka, and T. A. Keiderling, J. Am. Chem. Soc. 125, 7562 (2003).
20. R. A. G. D. Silva, S. C. Yasui, J. Kubelka, F. Formaggio, M. Crisma, C. Toniolo, and T. A. Keiderling, Biopolymers 65, 299 (2002).
21. J. Kubelka, R. A. G. D. Silva, and T. A. Keiderling, J. Am. Chem. Soc. 124, 5325 (2002).
22. C. Zhao, P. L. Polavarapu, C. Das, and P. Balaram, J. Am. Chem. Soc. 122, 8228 (2000).
23. R. Huang, J. Kubelka, W. Barber-Armstrong, R. A. G. D. Silva, S. M. Decatur, and T. A. Keiderling, J. Am. Chem. Soc. 126, 2346 (2004).
24. J.-H. Choi and M. Cho, J. Chem. Phys. 120, 4383 (2004).
25. R. D. Singh and T. A. Keiderling, J. Chem. Phys. 74, 5347 (1981).
26. P. J. Stephens, K. J. Jalkanen, R. D. Amos, P. Lazzeretti, and R. Zanasi, J. Am. Chem. Soc. 94, 1811 (1990).
27. D. Yang and A. Rauk, J. Chem. Phys. 97, 6517 (1992).
28. K. L. Bak, P. Jorgensen, T. Helgaker, K. Rudd, and H. J. A. Jensen, J. Chem. Phys. 98, 8873 (1993).
29. P. Bour and T. A. Keiderling, J. Am. Chem. Soc. 115, 9602 (1993).
30. J. R. Cheeseman, M. J. Frisch, F. J. Devlin, and P. J. Stephens, Chem. Phys. Lett. 252, 211 (1996).
31. P. Bour, J. Sopkova, L. Bednarova, P. Malon, and T. A. Keiderling, J. Comput. Chem. 18, 646 (1997).
32. P. Bour, J. Kubelka, and T. A. Keiderling, Biopolymers 65, 45 (2002).
33. P. Bour, J. Kubelka, and T. A. Keiderling, Biopolymers 53, 380 (2000).
34. S. Ham, J.-H. Kim, H. Lee, and M. Cho, J. Chem. Phys. 118, 3491 (2003).
35. K. Kwac and M. Cho, J. Chem. Phys. 119, 2247 (2003).
36. S. Ham and M. Cho, J. Chem. Phys. 118, 6915 (2003).
37. S. Ham, S. Cha, J.-H. Choi, and M. Cho, J. Chem. Phys. 119, 1451 (2003).
38. J.-H. Choi, S. Ham, and M. Cho, J. Phys. Chem. B 107, 9132 (2003).
39. S. Ham, S. Hahn, C. Lee, T.-K. Kim, K. Kwak, and M. Cho, J. Phys. Chem. B 108, 9333 (2004).
40. M. J. Frisch, G. W. Trucks, H. B. Schlegel, GAUSSIAN 98, Revision A.7 Gaussian, Inc., Pittsburgh, PA, 1998.
41. A. P. Scott and L. Radom, J. Phys. Chem. 100, 16502 (1996).
42. S. Cha, S. Ham, and M. Cho, J. Chem. Phys. 117, 740 (2002).
43. P. J. Stephens, J. Phys. Chem. 91, 1712 (1987).
44. G. Holzwarth and I. Chabay, J. Chem. Phys. 57, 1632 (1972).
45. J. Kubelka, P. Bour, R. A. G. D. Silva, S. M. Decatur, and T. A. Keiderling, in Chirality: Physical Chemistry, ACS Symposium Series Vol. 810, edited by, J. M. Hicks, (American Chemical Society, Washington, DC, 2002), p. 50.
46. J.-H. Choi, S. Ham, and M. Cho, J. Chem. Phys. 117, 6821 (2002).