Comparative aspects of alternative laboratory fish models

Zebrafish

Volumn 2, Issue 1, 2005, Pages 47-54

  Müller, Ferenc ^a,b  

^a KARLSRUHE INSTITUTE OF TECHNOLOGY   (Germany)

^b KARLSRUHE INSTITUTE OF TECHNOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 18444387426     PISSN: 15458547     EISSN: None     Source Type: Journal    
DOI: 10.1089/zeb.2005.2.47     Document Type: Note

References (50)

1. Hinegardner R. The cellular DNA content of sharks, rays and some other fishes. Comp Biochem Physiol B 1976;55:367-370.
2. Hinegardner R. Evolution of cellular DNA content in teleostean fishes. Am Naturalist 1968;102:517-523.
3. Fishman MC. Genomics. Zebrafish - the canonical vertebrate. Science 2001;294:1290-1291.
4. Furutani-Seiki M, Wittbrodt J. Medaka and zebrafish, an evolutionary twin study. Mech Dev 2004;121:629-637.
5. Grunwald DJ, Eisen JS. Headwaters of the zebrafish - emergence of a new model vertebrate. Nat Rev Genet 2002;3:717-724.
6. Yamamoto Y. Cavefish. Curr Biol 2004;14:R943.
7. Macdonald R, Barth KA, Xu Q, Holder N, Mikkola I, Wilson SW. Midline signaling is required for Pax gene regulation and patterning of the eyes. Development 1995;121:3267-3278.
8. Yamamoto Y, Stock DW, Jeffery WR. Hedgehog signaling controls eye degeneration in blind cavefish. Nature 2004;431:844-847.
9. Yamamoto Y, Espinasa L, Stock DW, Jeffery WR. Development and evolution of craniofacial patterning is mediated by eye-dependent and -independent processes in the cavefish Astyanax. Evol Dev 2003;5:435-446.
10. Peichel CL, Ross JA, Matson CK, Dickson M, Grimwood J, Schmutz J, Myers RM, Mori S, Schluter D, Kingsley DM. The master sex-determination locus in threespine sticklebacks is on a nascent Y chromosome. Curr Biol 2004;14:1416-1424.
11. Peichel CL, Nereng KS, Ohgi KA, Cole BL, Colosimo PF, Buerkle CA, Schluter D, Kingsley DM. The genetic architecture of divergence between threespine stickleback species. Nature 2001;414:901-905.
12. Shapiro MD, Marks ME, Peichel CL, Blackman BK, Nereng KS, Jonsson B, Schluter D, Kingsley DM. Genetic and developmental basis of evolutionary pelvic reduction in threespine sticklebacks. Nature 2004;428:717-723.
13. Colosimo PF, Peichel CL, Nereng K, Blackman BK, Shapiro MD, Schluter D, Kingsley DM. The genetic architecture of parallel armor plate reduction in three-spine sticklebacks. PLoS Biol 2004;2:E109.
14. McKinnon JS, Mori S, Blackman BK, David L, Kingsley DM, Jamieson L, Chou J, Schluter D. Evidence of ecology's role in speciation. Nature 2004;429:294-298.
15. Peichel CL, Boughman JW. Sticklebacks. Curr Biol 2003;13:R942-943.
16. Albertson RC, Markert JA, Danley PD, Kocher TD. Phylogeny of a rapidly evolving clade: the cichlid fishes of Lake Malawi, East Africa. Proc Natl Acad Sci USA 1999;96:5107-5110.
17. Albertson RC, Streelman JT, Kocher TD. Directional selection has shaped the oral jaws of Lake Malawi cichlid fishes. Proc Natl Acad Sci USA 2003;100:5252-5257.
18. Wu P, Jiang TX, Suksaweang S, Widelitz RB, Chuong CM. Molecular shaping of the beak. Science 2004;305:1465-1466.
19. Terai Y, Morikawa N, Okada N. The evolution of the pro-domain of bone morphogenetic protein 4 (Bmp4) in an explosively speciated lineage of East African cichlid fishes. Mol Biol Evol 2002;19:1628-1632.
20. Miklosi A, Csanyi V, Gerlai R. Antipredator behavior in paradise fish (Macropodus opercularis) larvae: the role of genetic factors and paternal influence. Behav Genet 1997;27:191-200.
21. Gerlai R, Crusio WE, Csanyi V. Inheritance of species-specific behaviors in the paradise fish (Macropodus opercularis): a diallel study. Behav Genet 1990;20:487-498.
22. Gerlai R, Csanyi V. Genotype-environment interaction and the correlation structure of behavioral elements in paradise fish (Macropodus opercularis). Physiol Behav 1990;47:343-356.
23. de Bruin JPC. Telencephalic functions in the behaviour of the Siamese Fighting fish Betta Ssplends regan (Pisces, Anabantidae). In: Faculteit der Wiskunde en Natuurwetenschappen,1977. Universiteit van Amsterdam, Netherlands, p 1-175.
24. Collazo A, Fraser SE, Mabee PM. A dual embryonic origin for vertebrate mechanoreceptors. Science 1994;264:426-430.
25. Amatruda JF, Shepard JL, Stern HM, Zon LI. Zebrafish as a cancer model system. Cancer Cell 2002;1:229-231.
26. Stern HM, Zon LI. Cancer genetics and drug discovery in the zebrafish. Nat Rev Cancer 2003;3:533-539.
27. Volff JN, Schartl M. Sex determination and sex chromosome evolution in the medaka, Oryzias latipes, and the platyfish, Xiphophorus maculatus. Cytogenet Genome Res 2002;99:170-177.
28. Zauner H, Begemann G, Mari-Beffa M, Meyer A. Differential regulation of msx genes in the development of the gonopodium, an intromittent organ, and of the "sword," a sexually selected trait of swordtail fishes (Xiphophorus). Evol Dev 2003;5:466-477.
29. Schartl M. Platyfish and swordtails: a genetic system for the analysis of molecular mechanisms in tumor formation. Trends Genet 1995;11:185-189.
30. Winkler C, Wittbrodt J, Lammers R, Ullrich A, Schartl M. Ligand-dependent tumor induction in medakafish embryos by a Xmrk receptor tyrosine kinase transgene. Oncogene 1994;9:1517-1525.
31. Patton EE, Widlund HR, Kutok JL, Kopani KR, Amatruda JF, Murphey RD, Berghmans S, Mayhall EA, Traver D, Fletcher CD, et al. BRAF mutations are sufficient to promote nevi formation and cooperate with p53 in the genesis of melanoma. Curr Biol 2005;15:249-254.
32. Walter RB, Rains JD, Russell JE, Guerra TM, Daniels C, Johnston DA, Kumar J, Wheeler A, Kelnar K, Khanolkar VA, et al. A microsatellite genetic linkage map for Xiphophorus. Genetics 2004;168:363-372.
33. Trinkaus JP. The midblastula transition, the YSL transition and the onset of gastrulation in Fundulus. Dev Suppl 1992;75-80.
34. Pierce VA, Crawford DL. Phylogenetic analysis of glycolytic enzyme expression. Science 1997;276:256-259.
35. Pennisi E. Comparative physiology. Recharged field's rallying cry: gene chips for all organisms. Science 2002;297:1985-1987.
36. Williams N. Life in the fast lane. Curr Biol 2003;13:R584.
37. Keller ET, Murtha JM. The use of mature zebrafish (Danio rerPalatinoio) as a model for human aging and disease. Comp Biochem Physiol C Toxicol Pharmacol 2004;138:335-341.
38. Gerhard GS, Cheng KC. A call to fins! Zebrafish as a gerontological model. Aging Cell 2002;1:104-111.
39. Aparicio S, Morrison A, Gould A, Gilthorpe J, Chaudhuri C, Rigby P, Krumlauf R, Brenner S. Detecting conserved regulatory elements with the model genome of the Japanese puffer fish, Fugu rubripes. Proc Natl Acad Sci USA 1995;92:1684-1688.
40. Woolfe A, Goodson M, Goode DK, Snell P, McEwen GK, Vavouri T, Smith SF, North P, Callaway H, Kelly K, et al. Highly conserved non-coding sequences are associated with vertebrate development. PLoS Biol 2005;3:e7.
41. Muller F, Blader P, Strahle U. Search for enhancers: teleost models in comparative genomic and transgenic analysis of cis regulatory elements. Bioessays 2002;24:564-572.
42. Boffelli D, Nobrega MA, Rubin EM. Comparative genomics at the vertebrate extremes. Nat Rev Genet 20045:456-465.
43. Plessy C, Dickmeis T, Chalmel F, Strähle U. Enhancer sequence conservation between vertebrates is favoured in developmental regulator genes. Trends in Genetics 2005;21:207-210.
44. Roest Crollius H, Jaillon O, Bernot A, Dasilva C, Bouneau L, Fischer C, Fizames C, Wincker P, Brottier P, Quetier F, et al. Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence. Nat Genet 2000;25:235-238.
45. Naruse K, Tanaka M, Mita K, Shima A, Postlethwait J, Mitani H. A medaka gene map: the trace of ancestral vertebrate proto-chromosomes revealed by comparative gene mapping. Genome Res 2004;14:820-828.
46. Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, et al. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 2004;431:946-957.
47. Meyer A, Schartl M. Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions. Curr Opin Cell Biol 1999;11:699-704.
48. Robinson-Rechavi M, Marchand O, Escriva H, Laudet V. An ancestral whole-genome duplication may not have been responsible for the abundance of duplicated fish genes. Curr Biol 2001;11:R458-459.
49. Amores A, Suzuki T, Yan YL, Pomeroy J, Singer A, Amemiya C, Postlethwait JH. Developmental roles of pufferfish Hox clusters and genome evolution in rayfin fish. Genome Res 2004;14:1-10.
50. Nelson JS. Fishes of the World, 3rd Ed. John Wiley and Sons, New York, 1994.