-
1
-
-
0023660681
-
Topological unwinding of strong and weak promoters by RNA polymerase. A comparison between the lac wild-type and the UV5 sites of Escherichia coli
-
Amouyal M, Buc H (1987) Topological unwinding of strong and weak promoters by RNA polymerase, A comparison between the lac wild-type and the UV5 sites of Escherichia coli. J Mol Biol 195: 795-808
-
(1987)
J Mol Biol
, vol.195
, pp. 795-808
-
-
Amouyal, M.1
Buc, H.2
-
2
-
-
0028090563
-
Interactions between the cyclic AMP receptor protein and the alpha subunit of RNA polymerase at the Escherichia coli galactose operon P1 promoter
-
Attey A, Belyaeda T, Savery N, Hoggett J, Fujita N, Ishihama A, Busby S (1994) Interactions between the cyclic AMP receptor protein and the alpha subunit of RNA polymerase at the Escherichia coli galactose operon P1 promoter. Nucleic Acids Res 22: 4375-4380
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4375-4380
-
-
Attey, A.1
Belyaeda, T.2
Savery, N.3
Hoggett, J.4
Fujita, N.5
Ishihama, A.6
Busby, S.7
-
3
-
-
0022513824
-
Mutations that reduce expression from the P2 promoter of the Escherichia coli galactose operon
-
Bingham AH, Ponnambalam S, Chan B, Busby S (1986) Mutations that reduce expression from the P2 promoter of the Escherichia coli galactose operon. Gene 41: 67-74
-
(1986)
Gene
, vol.41
, pp. 67-74
-
-
Bingham, A.H.1
Ponnambalam, S.2
Chan, B.3
Busby, S.4
-
4
-
-
0027493457
-
Influence of 5′-nearest neighbors on the insertion kinetics of the fluorescent nucleotide analog 2-aminopurine by Klenow fragment
-
Bloom L, Otto MR, Beechem JM, Goodman MF (1993) Influence of 5′-nearest neighbors on the insertion kinetics of the fluorescent nucleotide analog 2-aminopurine by Klenow fragment. Biochemistry 32: 11247-11248
-
(1993)
Biochemistry
, vol.32
, pp. 11247-11248
-
-
Bloom, L.1
Otto, M.R.2
Beechem, J.M.3
Goodman, M.F.4
-
6
-
-
0032498230
-
The enhanceosome and transcriptional synergy
-
Carey M (1998) The enhanceosome and transcriptional synergy. Cell 92: 5-8
-
(1998)
Cell
, vol.92
, pp. 5-8
-
-
Carey, M.1
-
7
-
-
0016000514
-
The selectivity of transcription
-
Chamberlin MJ (1974) The selectivity of transcription. Annu Rev Biochem 43: 721-725
-
(1974)
Annu Rev Biochem
, vol.43
, pp. 721-725
-
-
Chamberlin, M.J.1
-
8
-
-
0027508925
-
RNA polymerase idling and clearance in gal promoters: Use of supercoiled minicircle DNA template made in vivo
-
Choy HE, Adhya S (1993) RNA polymerase idling and clearance in gal promoters: use of supercoiled minicircle DNA template made in vivo. Proc Natl Acad Sci USA 90: 472-476
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 472-476
-
-
Choy, H.E.1
Adhya, S.2
-
9
-
-
0029094575
-
Open complex formation by Escherichia coli RNA polymerase: The mechanism of polymerase-induced strand separation of double helical DNA
-
deHaseth PL, Helmann JD (1995) Open complex formation by Escherichia coli RNA polymerase: the mechanism of polymerase-induced strand separation of double helical DNA. Mol Microbiol 16: 817-824
-
(1995)
Mol Microbiol
, vol.16
, pp. 817-824
-
-
DeHaseth, P.L.1
Helmann, J.D.2
-
10
-
-
0034161515
-
Escherichia coli promoter opening and -10 recognition: Mutational analysis of sigma 70
-
Fenton MS, Lee SJ, Gralla JD (2000) Escherichia coli promoter opening and -10 recognition: mutational analysis of sigma 70. EMBO J 19: 1130-1137
-
(2000)
EMBO J
, vol.19
, pp. 1130-1137
-
-
Fenton, M.S.1
Lee, S.J.2
Gralla, J.D.3
-
11
-
-
0020322130
-
A topological model for transcription based on unwinding angle analysis of E. coli RNA polymerase binary, initiation and ternary complexes
-
Gamper HB, Hearst JE (1982) A topological model for transcription based on unwinding angle analysis of E. coli RNA polymerase binary, initiation and ternary complexes. Cell 29: 81-90
-
(1982)
Cell
, vol.29
, pp. 81-90
-
-
Gamper, H.B.1
Hearst, J.E.2
-
12
-
-
0026602710
-
Regulation of open complex formation at the Escherichia coli galactose operon promoters. Simultaneous interaction of RNA polymerase, gal repressor and CAP/cAMP
-
Goodrich JA, McClure WR (1992) Regulation of open complex formation at the Escherichia coli galactose operon promoters. Simultaneous interaction of RNA polymerase, gal repressor and CAP/cAMP. J Mol Biol 224: 15-29
-
(1992)
J Mol Biol
, vol.224
, pp. 15-29
-
-
Goodrich, J.A.1
McClure, W.R.2
-
13
-
-
0000661051
-
Organization and function of transcription regulatory elements
-
Neidhardt FC (ed). Washington, DC: ASM Press
-
Gralla JD, Collado-Vides J (1996) Organization and function of transcription regulatory elements. In Escherichia coli and Salmonella, Neidhardt FC (ed), pp 1232-1245. Washington, DC: ASM Press
-
(1996)
Escherichia coli and Salmonella
, pp. 1232-1245
-
-
Gralla, J.D.1
Collado-Vides, J.2
-
15
-
-
0029797569
-
Kinetic analysis of RNA polymerase-promoter interactions
-
Gussin GN (1996) Kinetic analysis of RNA polymerase-promoter interactions. Methods Enzymol 273: 45-59
-
(1996)
Methods Enzymol
, vol.273
, pp. 45-59
-
-
Gussin, G.N.1
-
16
-
-
0022453806
-
Overlapping promoters and their control in Escherichia coli: The gal case
-
Herbert M, Kolb A, Buc H (1986) Overlapping promoters and their control in Escherichia coli: the gal case. Proc Natl Acad Sci USA 83: 2807-2811
-
(1986)
Proc Natl Acad Sci USA
, vol.83
, pp. 2807-2811
-
-
Herbert, M.1
Kolb, A.2
Buc, H.3
-
17
-
-
0029846428
-
Equilibrium and stopped-flow kinetic studies of interaction between T7 RNA polymerase and its promoters measured by protein and 2-aminopurine fluorescence changes
-
Jia Y, Kumar A, Patel SS (1996) Equilibrium and stopped-flow kinetic studies of interaction between T7 RNA polymerase and its promoters measured by protein and 2-aminopurine fluorescence changes. J Biol Chem 71: 30451-30458
-
(1996)
J Biol Chem
, vol.71
, pp. 30451-30458
-
-
Jia, Y.1
Kumar, A.2
Patel, S.S.3
-
18
-
-
0001299826
-
Principles governing the activity of E. coli promoters
-
Eckenstein F, Lilley DMJ (eds). Berlin: Springer-Verlag
-
Knaus R, Bujard H (1990) Principles governing the activity of E. coli promoters. In Nucleic Acids and Molecular Biology, Eckenstein F, Lilley DMJ (eds), Vol. 4, pp 110-112. Berlin: Springer-Verlag
-
(1990)
Nucleic Acids and Molecular Biology
, vol.4
, pp. 110-112
-
-
Knaus, R.1
Bujard, H.2
-
19
-
-
0026522988
-
Upstream curved sequences influence the initiation of transcription at the Escherichia coli galactose operon
-
Lavigne M, Herbert M, Kolb A, Buc H (1992) Upstream curved sequences influence the initiation of transcription at the Escherichia coli galactose operon. J Mol Biol 224: 293-306
-
(1992)
J Mol Biol
, vol.224
, pp. 293-306
-
-
Lavigne, M.1
Herbert, M.2
Kolb, A.3
Buc, H.4
-
20
-
-
0029758746
-
Spectroscopic and calorimetric characterizations of DNA duplexes containing 2-aminopurine
-
Law SM, Eritja R, Goodman MF, Breslauer KJ (1996) Spectroscopic and calorimetric characterizations of DNA duplexes containing 2-aminopurine. Biochemistry 35: 12329-12337
-
(1996)
Biochemistry
, vol.35
, pp. 12329-12337
-
-
Law, S.M.1
Eritja, R.2
Goodman, M.F.3
Breslauer, K.J.4
-
21
-
-
0035910043
-
A 'master' in base unpairing during isomerization of a promoter upon RNA polymerase binding
-
Lim HM, Lee HJ, Roy S, Adhya S (2001) A 'master' in base unpairing during isomerization of a promoter upon RNA polymerase binding. Proc Natl Acad Sci USA 98: 14849-14852
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 14849-14852
-
-
Lim, H.M.1
Lee, H.J.2
Roy, S.3
Adhya, S.4
-
22
-
-
0141891206
-
Kinetics of transcription initiation at lacP1. Multiple roles of cyclic AMP receptor protein
-
Liu M, Gupta G, Roy S, Bandujar RP, Patel SS, Garges S (2003) Kinetics of transcription initiation at lacP1. Multiple roles of cyclic AMP receptor protein. J Biol Chem 278: 39755-39761
-
(2003)
J Biol Chem
, vol.278
, pp. 39755-39761
-
-
Liu, M.1
Gupta, G.2
Roy, S.3
Bandujar, R.P.4
Patel, S.S.5
Garges, S.6
-
23
-
-
0021891874
-
Mechanism and control of transcription initiation in prokaryotes
-
McClure WR (1985) Mechanism and control of transcription initiation in prokaryotes. Ann Rev Biochem 54: 171-204
-
(1985)
Ann Rev Biochem
, vol.54
, pp. 171-204
-
-
McClure, W.R.1
-
24
-
-
0023658599
-
Effects of functional group changes in the EcoRI recognition site on the cleavage reaction catalyzed by the endonuclease
-
McLaughlin L, Benseler F, Graser E, Piel N, Scholtissek S (1987) Effects of functional group changes in the EcoRI recognition site on the cleavage reaction catalyzed by the endonuclease. Biochemistry 26: 7238-7245
-
(1987)
Biochemistry
, vol.26
, pp. 7238-7245
-
-
McLaughlin, L.1
Benseler, F.2
Graser, E.3
Piel, N.4
Scholtissek, S.5
-
25
-
-
0037123602
-
Structural basis of transcription initiation: An RNA polymerase holoenzyme-DNA complex
-
Murakami KS, Masuda S, Campbell EA, Muzzin O, Darst SA (2002a) Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex. Science 296: 1285-1290
-
(2002)
Science
, vol.296
, pp. 1285-1290
-
-
Murakami, K.S.1
Masuda, S.2
Campbell, E.A.3
Muzzin, O.4
Darst, S.A.5
-
26
-
-
0037123659
-
Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution
-
Murakami KS, Masuda S, Darst SA (2002b) Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution. Science 296: 1280-1284
-
(2002)
Science
, vol.296
, pp. 1280-1284
-
-
Murakami, K.S.1
Masuda, S.2
Darst, S.A.3
-
27
-
-
0024456523
-
Structure and dynamics of a fluorescent DNA oligomer containing the EcoRI recognition sequence: Fluorescence, molecular dynamics, and NMR studies
-
Nordlund TM, Anderson S, Nilsson L, Rigearler R, Graslund A, McLaughlin LW (1989) Structure and dynamics of a fluorescent DNA oligomer containing the EcoRI recognition sequence: fluorescence, molecular dynamics, and NMR studies. Biochemistry 28: 9095-9103
-
(1989)
Biochemistry
, vol.28
, pp. 9095-9103
-
-
Nordlund, T.M.1
Anderson, S.2
Nilsson, L.3
Rigearler, R.4
Graslund, A.5
McLaughlin, L.W.6
-
28
-
-
0030960672
-
Transcriptional activation by recruitment
-
Ptashne M, Gann A (1997) Transcriptional activation by recruitment. Nature 386: 569-577
-
(1997)
Nature
, vol.386
, pp. 569-577
-
-
Ptashne, M.1
Gann, A.2
-
30
-
-
0001416657
-
70), promoters, and the kinetics of the steps of transcription initiation
-
Neidhardt FC (ed). Washington, DC: ASM Press
-
70), promoters, and the kinetics of the steps of transcription initiation. In Escherichia coli and Salmonella, Neidhardt FC (ed), p p 792-820. Washington, DC: ASM Press
-
(1996)
Escherichia coli and Salmonella
, pp. 792-820
-
-
Record Jr., M.T.1
Reznikoff, W.S.2
Craig, M.L.3
McQuade, K.L.4
Schlax, P.J.5
-
31
-
-
0029068245
-
On base flipping
-
Roberts RJ (1995) On base flipping. Cell 82: 9-12
-
(1995)
Cell
, vol.82
, pp. 9-12
-
-
Roberts, R.J.1
-
32
-
-
0032486385
-
Activation and repression of transcription by differential contact: Two sides of a coin
-
Roy S, Garges S, Adhya S (1998) Activation and repression of transcription by differential contact: two sides of a coin. J Biol Chem 273: 14059-14062
-
(1998)
J Biol Chem
, vol.273
, pp. 14059-14062
-
-
Roy, S.1
Garges, S.2
Adhya, S.3
-
34
-
-
0000812659
-
Base pairing and mutagenesis: Observation of a protonated base pair between 2-aminopurine and cytosine in an oligonucleotide by proton NMR
-
Sowers LC, Fazakerley GV, Eritja R, Kaplan BE, Goodman MF (1986) Base pairing and mutagenesis: observation of a protonated base pair between 2-aminopurine and cytosine in an oligonucleotide by proton NMR. Proc Natl Acad Sci USA 83: 5434-5438
-
(1986)
Proc Natl Acad Sci USA
, vol.83
, pp. 5434-5438
-
-
Sowers, L.C.1
Fazakerley, G.V.2
Eritja, R.3
Kaplan, B.E.4
Goodman, M.F.5
-
35
-
-
0021988148
-
Mechanisms of spontaneous and induced frameshift mutation in bacteriophage T4
-
Streisinger G, Owen J (1985) Mechanisms of spontaneous and induced frameshift mutation in bacteriophage T4. Genetics 109: 633-659
-
(1985)
Genetics
, vol.109
, pp. 633-659
-
-
Streisinger, G.1
Owen, J.2
-
36
-
-
0026914059
-
Roles of Mg2 + in the mechanism of formation and dissociation of open complexes between Escherichia coli RNA polymerase and the lambda PR promoter: Kinetic evidence for a second open complex requiring Mg2 +
-
Suh WC, Leirmo S, Record Jr MT (1992) Roles of Mg2 + in the mechanism of formation and dissociation of open complexes between Escherichia coli RNA polymerase and the lambda PR promoter: kinetic evidence for a second open complex requiring Mg2 +. Biochemistry 31: 7815-7825
-
(1992)
Biochemistry
, vol.31
, pp. 7815-7825
-
-
Suh, W.C.1
Leirmo, S.2
Record Jr., M.T.3
-
37
-
-
0027398001
-
Two open complexes and a requirement for Mg2 + to open the lambda PR transcription start site
-
Suh WC, Ross W, Record Jr MT (1993) Two open complexes and a requirement for Mg2 + to open the lambda PR transcription start site. Science 259: 358-361
-
(1993)
Science
, vol.259
, pp. 358-361
-
-
Suh, W.C.1
Ross, W.2
Record Jr., M.T.3
-
38
-
-
0030745622
-
Spectroscopic determination of open complex formation at promoters for Escherichia coli RNA polymerase
-
Sullivan JJ, Bjornson KP, Sowers LC, deHaseth PL (1997) Spectroscopic determination of open complex formation at promoters for Escherichia coli RNA polymerase. Biochemistry 36: 8005-8012
-
(1997)
Biochemistry
, vol.36
, pp. 8005-8012
-
-
Sullivan, J.J.1
Bjornson, K.P.2
Sowers, L.C.3
DeHaseth, P.L.4
-
39
-
-
0037168467
-
RNA polymerase alters the mobolity of an A-residue crucial to polymerase-induced melting of promoter DNA
-
Tsujikawa L, Strainic MG, Watrob H, Barkley MD, deHaseth PL (2002) RNA polymerase alters the mobolity of an A-residue crucial to polymerase-induced melting of promoter DNA. Biochemistry 41: 15334-15341
-
(2002)
Biochemistry
, vol.41
, pp. 15334-15341
-
-
Tsujikawa, L.1
Strainic, M.G.2
Watrob, H.3
Barkley, M.D.4
DeHaseth, P.L.5
-
40
-
-
0030446799
-
Thermodynamic and kinetic measurements of promoter binding by T7 RNA polymerase
-
Újvári A, Martin CT (1996) Thermodynamic and kinetic measurements of promoter binding by T7 RNA polymerase. Biochemistry 35: 14574-14582
-
(1996)
Biochemistry
, vol.35
, pp. 14574-14582
-
-
Újvári, A.1
Martin, C.T.2
-
41
-
-
0025353207
-
Base stacking and unstacking as determined from a DNA decamer containing a fluorescent base
-
Wu P, Nordlund TM, Gildea B, McLaughlin LW (1990) Base stacking and unstacking as determined from a DNA decamer containing a fluorescent base. Biochemistry 29: 6508-6514
-
(1990)
Biochemistry
, vol.29
, pp. 6508-6514
-
-
Wu, P.1
Nordlund, T.M.2
Gildea, B.3
McLaughlin, L.W.4
-
42
-
-
0028128641
-
Melting and premelting transitions of an oligomer measured by DNA base fluorescence and absorption
-
Xu D, Evans KO, Nordlund TM (1994) Melting and premelting transitions of an oligomer measured by DNA base fluorescence and absorption. Biochemistry 33: 9592-9599
-
(1994)
Biochemistry
, vol.33
, pp. 9592-9599
-
-
Xu, D.1
Evans, K.O.2
Nordlund, T.M.3
|