메뉴 건너뛰기




Volumn 21, Issue 4, 2004, Pages 724-731

A Test of Neutrality and Constant Population Size Based on the Mismatch Distribution

Author keywords

Demography; DNA polymorphism; Mismatch distribution; Neutrality test; Selective sweep

Indexed keywords

DNA;

EID: 1842557437     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msh066     Document Type: Article
Times cited : (40)

References (36)
  • 1
    • 0029036829 scopus 로고
    • The hitchhiking effect on the site frequency spectrum of DNA polymorphisms
    • Braverman, J. M., R. R. Hudson, N. L. Kaplan, C. H. Langley, and W. Stephan. 1995. The hitchhiking effect on the site frequency spectrum of DNA polymorphisms. Genetics 140:783-796.
    • (1995) Genetics , vol.140 , pp. 783-796
    • Braverman, J.M.1    Hudson, R.R.2    Kaplan, N.L.3    Langley, C.H.4    Stephan, W.5
  • 2
    • 0029998061 scopus 로고    scopus 로고
    • Geographic variation in human mitochondrial DNA control region sequence: The population history of Turkey and its relationship to the European populations
    • Comas, D., F. Calafell, E. Mateu, A. Perez-Lezaun, and J. Bertranpetit. 1996. Geographic variation in human mitochondrial DNA control region sequence: the population history of Turkey and its relationship to the European populations. Mol. Biol. Evol. 13:1067-1077.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 1067-1077
    • Comas, D.1    Calafell, F.2    Mateu, E.3    Perez-Lezaun, A.4    Bertranpetit, J.5
  • 3
    • 0032894285 scopus 로고    scopus 로고
    • Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila
    • Comeron, J. M., M. Kreitman, and M. Aguadé. 1999. Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila. Genetics 151:239-249.
    • (1999) Genetics , vol.151 , pp. 239-249
    • Comeron, J.M.1    Kreitman, M.2    Aguadé, M.3
  • 4
    • 0034983649 scopus 로고    scopus 로고
    • Haplotype tests using coalescent simulations conditional on the number of segregating sites
    • Depaulis, F., S. Mousset, and M. Veuille. 2001. Haplotype tests using coalescent simulations conditional on the number of segregating sites. Mol. Biol. Evol. 18:1136-1138.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1136-1138
    • Depaulis, F.1    Mousset, S.2    Veuille, M.3
  • 5
    • 0348011482 scopus 로고    scopus 로고
    • Power of neutrality tests to detect bottlenecks and hitchhiking
    • -. 2003. Power of neutrality tests to detect bottlenecks and hitchhiking. J. Mol. Evol. 57:s190-s200.
    • (2003) J. Mol. Evol. , vol.57
  • 6
    • 33846017495 scopus 로고    scopus 로고
    • Detcting selective sweeps with haplotype tests
    • D. Nurminsky, ed. Landes Biosciences, Georgetown, Tex. in press
    • -. 2004. Detecting selective sweeps with haplotype tests. in D. Nurminsky, ed., Selective Sweep. Landes Biosciences, Georgetown, Tex. in press.
    • (2004) Selective Sweep
  • 7
    • 0031773191 scopus 로고    scopus 로고
    • Neutrality tests based on the distribution of haplotypes under an infinite-site model
    • Depaulis, F., and M. Veuille. 1998. Neutrality tests based on the distribution of haplotypes under an infinite-site model. Mol. Biol. Evol. 15:1788-1790.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1788-1790
    • Depaulis, F.1    Veuille, M.2
  • 8
    • 0015310384 scopus 로고
    • The sampling theory of selectively neutral alleles
    • Ewens, W. J. 1972. The sampling theory of selectively neutral alleles. Theor. Popul. Biol. 3:87-112,
    • (1972) Theor. Popul. Biol. , vol.3 , pp. 87-112
    • Ewens, W.J.1
  • 9
    • 0032866099 scopus 로고    scopus 로고
    • Why hunter-gatherer populations do not show signs of Pleistocene demographic expansions
    • Excoffier, L., and S. Schneider. 1999. Why hunter-gatherer populations do not show signs of Pleistocene demographic expansions. Proc. Natl. Acad. Sci. USA 96:10597-10602.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 10597-10602
    • Excoffier, L.1    Schneider, S.2
  • 10
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive Darwinian selection
    • Fay, J. C., and C.-I. Wu. 2000. Hitchhiking under positive Darwinian selection. Genetics 155:1405-1413.
    • (2000) Genetics , vol.155 , pp. 1405-1413
    • Fay, J.C.1    Wu, C.-I.2
  • 11
    • 0029980416 scopus 로고    scopus 로고
    • New statistical tests of neutrality for DNA samples from a population
    • Fu, Y.-X. 1996. New statistical tests of neutrality for DNA samples from a population. Genetics 143:557-570.
    • (1996) Genetics , vol.143 , pp. 557-570
    • Fu, Y.-X.1
  • 12
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
    • -. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147:915-925.
    • (1997) Genetics , vol.147 , pp. 915-925
  • 13
    • 0347065347 scopus 로고    scopus 로고
    • Demography and natural selection have shaped genetic variation in Drosophila melanogaster: A multi-locus approach
    • Glinka, S., L. Ometto, S. Mousset, W. Stephan, and D. De Lorenzo. 2003. Demography and natural selection have shaped genetic variation in Drosophila melanogaster: a multi-locus approach. Genetics 165:1269-1278.
    • (2003) Genetics , vol.165 , pp. 1269-1278
    • Glinka, S.1    Ometto, L.2    Mousset, S.3    Stephan, W.4    De Lorenzo, D.5
  • 14
    • 0034575123 scopus 로고    scopus 로고
    • Genetic perspectives on human origins and differentiation
    • Harpending, H., and A. Rogers. 2000. Genetic perspectives on human origins and differentiation. Annu. Rev. Genomics Hum. Genet. 1:361-385.
    • (2000) Annu. Rev. Genomics Hum. Genet. , vol.1 , pp. 361-385
    • Harpending, H.1    Rogers, A.2
  • 16
    • 0023612034 scopus 로고
    • Estimating the recombination parameter of a finite population model without selection
    • Hudson, R. R. 1987. Estimating the recombination parameter of a finite population model without selection. Genet. Res. 50:245-250.
    • (1987) Genet. Res. , vol.50 , pp. 245-250
    • Hudson, R.R.1
  • 17
    • 0001935493 scopus 로고
    • Gene genealogies and the coalescent process
    • D. Futuyama and J. Antonovics, eds., Oxford University Press, Oxford, U.K.
    • -. 1990. Gene genealogies and the coalescent process. Pp. 1-45 in D. Futuyama and J. Antonovics, eds., Oxford surveys in evolutionnary biology, vol. 7, Oxford University Press, Oxford, U.K.
    • (1990) Oxford Surveys in Evolutionnary Biology , vol.7 , pp. 1-45
  • 18
    • 0000601292 scopus 로고
    • The how and why of generating gene genealogies
    • N. Takahata and A. Clark, eds., Sinauer Associates, Sunderland, Mass.
    • -. 1993. The how and why of generating gene genealogies. Pp. 23-36 in N. Takahata and A. Clark, eds., Mechanisms of molecular evolution, Sinauer Associates, Sunderland, Mass.
    • (1993) Mechanisms of Molecular Evolution , pp. 23-36
  • 19
    • 0028215929 scopus 로고
    • Evidence for positive selection in the superoxide dismutase (sod) region of Drosophila melanogaster
    • Hudson, R. R., K. Bailey, D. Skarecky, J. Kwiatowski, and F. J. Ayala. 1994. Evidence for positive selection in the superoxide dismutase (sod) region of Drosophila melanogaster. Genetics 136:1329-1340.
    • (1994) Genetics , vol.136 , pp. 1329-1340
    • Hudson, R.R.1    Bailey, K.2    Skarecky, D.3    Kwiatowski, J.4    Ayala, F.J.5
  • 20
    • 0036189827 scopus 로고    scopus 로고
    • Detecting a local signature of genetic hitchhiking along a recombining chromosome
    • Kim, Y., and W. Stephan. 2002. Detecting a local signature of genetic hitchhiking along a recombining chromosome. Genetics 160:765-777.
    • (2002) Genetics , vol.160 , pp. 765-777
    • Kim, Y.1    Stephan, W.2
  • 21
    • 75949146309 scopus 로고
    • The number of alleles that can be maintained in a finite population
    • Kimura, M., and J. Crow. 1964. The number of alleles that can be maintained in a finite population. Genetics 49:725-738.
    • (1964) Genetics , vol.49 , pp. 725-738
    • Kimura, M.1    Crow, J.2
  • 22
    • 0033178244 scopus 로고    scopus 로고
    • Paleo-demography of the Drosophila melanogaster subgroup: Application of the maximum likelihood method
    • Li, Y. J., Y. Satta, and N. Takahata. 1999. Paleo-demography of the Drosophila melanogaster subgroup: application of the maximum likelihood method. Genes Genet. Syst. 74:117-127.
    • (1999) Genes Genet. Syst. , vol.74 , pp. 117-127
    • Li, Y.J.1    Satta, Y.2    Takahata, N.3
  • 23
    • 0002377328 scopus 로고
    • Un traitement stochastique des problèmes linéaires (mutation, linkage, migration) en génétique de population
    • Malécot, G. 1951. Un traitement stochastique des problèmes linéaires (mutation, linkage, migration) en génétique de population. Ann. Univ. Lyon Sci. Sec. A 14:79-117.
    • (1951) Ann. Univ. Lyon Sci. Sec. A , vol.14 , pp. 79-117
    • Malécot, G.1
  • 24
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favourable gene
    • Maynard Smith, J., and J. Haigh. 1974. The hitch-hiking effect of a favourable gene. Genet. Res. 23:23-35.
    • (1974) Genet. Res. , vol.23 , pp. 23-35
    • Maynard Smith, J.1    Haigh, J.2
  • 25
    • 0037297271 scopus 로고    scopus 로고
    • Evidence of a high rate of selective sweeps in African Drosophila melanogaster
    • Mousset, S., L. Brazier, M. L. Cariou, F. Chartois, F. Depaulis, and M. Veuille. 2003. Evidence of a high rate of selective sweeps in African Drosophila melanogaster. Genetics 163:599-609.
    • (2003) Genetics , vol.163 , pp. 599-609
    • Mousset, S.1    Brazier, L.2    Cariou, M.L.3    Chartois, F.4    Depaulis, F.5    Veuille, M.6
  • 27
    • 0036196885 scopus 로고    scopus 로고
    • The signature of positive selection at randomly chosen loci
    • Przeworski, M. 2002. The signature of positive selection at randomly chosen loci. Genetics 160:1179-1189.
    • (2002) Genetics , vol.160 , pp. 1179-1189
    • Przeworski, M.1
  • 28
    • 0036897674 scopus 로고    scopus 로고
    • Statistical properties of new neutrality tests against population growth
    • Ramos-Onsins, S. E., and J. Rozas. 2002. Statistical properties of new neutrality tests against population growth. Mol. Biol. Evol. 19:2092-2100.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 2092-2100
    • Ramos-Onsins, S.E.1    Rozas, J.2
  • 29
    • 0026548159 scopus 로고
    • Population growth makes waves in the distribution of pairwise genetic differences
    • Rogers, A. R., and H. Harpending. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9:552-569.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 552-569
    • Rogers, A.R.1    Harpending, H.2
  • 30
    • 0032972599 scopus 로고    scopus 로고
    • DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
    • Rozas, J., and R. Rozas. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15:174-175.
    • (1999) Bioinformatics , vol.15 , pp. 174-175
    • Rozas, J.1    Rozas, R.2
  • 31
    • 0025951996 scopus 로고
    • Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations
    • Slatkin, M., and R. R. Hudson. 1991. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129:555-562.
    • (1991) Genetics , vol.129 , pp. 555-562
    • Slatkin, M.1    Hudson, R.R.2
  • 32
    • 0001615347 scopus 로고
    • Average number of nucleotide differences in a sample from a single subpopulation: A test for population subdivision
    • Strobeck, C. 1987. Average number of nucleotide differences in a sample from a single subpopulation: a test for population subdivision. Genetics 117:149-153.
    • (1987) Genetics , vol.117 , pp. 149-153
    • Strobeck, C.1
  • 33
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • Tajima, F. 1983. Evolutionary relationship of DNA sequences in finite populations. Genetics 105:437-460.
    • (1983) Genetics , vol.105 , pp. 437-460
    • Tajima, F.1
  • 34
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • -. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
  • 35
    • 0034984837 scopus 로고    scopus 로고
    • Coalescent simulations and statistical tests of neutrality
    • Wall, J., and R. Hudson. 2001. Coalescent simulations and statistical tests of neutrality. Mol. Biol. Evol. 18:1134-1135.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1134-1135
    • Wall, J.1    Hudson, R.2
  • 36
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • Watterson, G. 1975. On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7:256-276.
    • (1975) Theor. Popul. Biol. , vol.7 , pp. 256-276
    • Watterson, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.