Geographic variation in human mitochondrial DNA control region sequence: The population history of Turkey and its relationship to the European populations

Molecular Biology and Evolution

Volumn 13, Issue 8, 1996, Pages 1067-1077

  Comas, David ^a   Calafell, Francesc ^a,c   Mateu, Eva ^b   Pérez Lezaun, Anna ^a   Bertranpetit, Jaume ^a,b  

^a UNIVERSITY OF BARCELONA   (Spain)

^b Inst de Salut Pub de Catalunya   (Spain)

^c YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

clusters; control region sequence; Europe; mtDNA; neighbor joining tree; pairwise difference distribution; Turkey

Indexed keywords

MITOCHONDRIAL DNA;

ARTICLE; CLINICAL ARTICLE; CONTROLLED STUDY; CULTURAL ANTHROPOLOGY; DNA SEQUENCE; EUROPE; GENE AMPLIFICATION; GENE CLUSTER; GENETIC DISTANCE; GENETIC VARIABILITY; GEOGRAPHY; HAIR ROOT; HUMAN; MIDDLE EAST; POLYMERASE CHAIN REACTION; POPULATION GENETICS; TURKEY (REPUBLIC);

EID: 0029998061     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025669     Document Type: Article

References (38)

1. AMMERMAN, A. J., and L. L. CAVALLI-SFORZA. 1984. The Neolithic transition and the genetics of populations in Europe. Princeton University Press, Princeton. N.J.
2. ANDERSON, S., A. T. BANKIER, B. G. BARRELL et al. (14 co-authors). 1981. Sequence and organization of the human mitochondrial genome. Nature 290:457-465.
3. BERTRANPETIT, J., J. SALA, F. CALAFELL, P. A. UNDERHILL, P. MORAL, and D. COMAS. 1995. Human mitochondrial DNA variation and the origin of the Basques. Ann. Hum. Genet. 59:63-81.
4. CABOT, E. L. 1988. ESEE, the eyeball sequence editor. Version 1.06. Burnaby, B.C., Canada.
5. CAVALLI-SFORZA, L. L., P. MENOZZI, and A. PIAZZA. 1994. History and geography of human genes. Princeton University Press, Princeton, N.J.
6. DI RIENZO, A., and A. C. WILSON. 1991. Branching pattern in the evolutionary tree for human mitochondrial DNA. Proc. Natl. Acad. Sci. USA 88:1597-1601.
7. EFRON, B. 1982. The jackknife, the bootstrap and other resampling plans. Society for Industrial and Applied Mathematics, Philadelphia, Pa.
8. FELSENSTEIN, J. 1985. Confidence limits on phytogenies: an approach using the bootstrap. Evolution 35:785-791.
9. _, 1989. PHYLIP-phylogeny inference package (version 3.2). Cladistics 5:164-166.
10. FRANCALACCI, P., J. BERTRANPETIT, F. CALAFELL, and P. UNDERHILL. 1996. Sequence diversity of the control region of mitochondrial DNA in Tuscany and its implications for the peopling of Europe. Am. J. Phys. Anthropol. (in press).
11. HARPENDLNG, H. C., S. T. SHERRY, A. R. ROGERS, and M. STONEKING. 1993. The genetic structure of ancient human populations. Curr. Anthropol. 34:483-496.
12. HUDSON, R. R. 1990. Gene genealogies and the coalescent process. Oxf. Surv. Evol. Biol. 7:1-44.
13. KLEIN, R. G. 1994. The problem of modem human origins. Pp. 3-17 in M. H. NITECKI and D. V. NITECKI, eds. Origins of anatomically modern humans. Plenum Press, New York and London.
14. KUMAR, S., K. TAMURA, and M. NEI. 1994. MEGA: molecular evolutionary genetics analysis software for microcomputers. CABIOS 10:189-191.
15. MANTEL, N. 1967. The detection of disease clustering and a generalized regression approach. Cancer Res. 27:209-220.
16. MELLARS, P. 1993. Archaeology and modern human origins in Europe. Proc. Br. Acad. 82:1-35.
17. MOUNTAIN, J. L., J. M. HEBERT, S. BHATTACHARYYA, P. A. UNDERHILL, P. OTTOLENGHI, M. GADGIL, and L. L. CAVALLI-SFORZA. 1995. Demographic history of India and mtDNA-sequence diversity. Am. J. Hum. Genet. 56:979-992.
18. NEI, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York.
19. NEI. M., and J. C. MILLER. 1990. A simple method for estimating average number of nucleotid substitutions within and between populations from restriction data. Genetics 125:873-879.
20. PIERCY, R., K. M. SULLIVA, N. N. BENSON, and P GILL. 1993. The application of mitochondrial DNA typing to the study of white Caucasian genetic identification. Int. J. Legal Med. 106:85-90.
21. RAO, C. R. 1982. Diversity and dissimilarity coefficients: a unified approach. Theor. Popul. Biol. 21:24-43.
22. RENFREW, C. 1987. Archaeology and language. The puzzle of Indoeuropean origins. Jonathan Cape, London.
23. _, 1992. Archaeology, genetics and liguistic diversity. Man 27:445-478.
24. ROGERS, A. R., and H. RARPENDING. 1992. Population growth makes waves in the distribution of pairwise genetic differences Mol. Biol. Evol. 9:552-569.
25. SAITOU, N., and M. NEI. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
26. SANTOS, M., R. H. WARD, and R. BARRANTES. 1994. mtDNA variation in the Chibcha Amerindian Huetar from Costa Rica. Hum. Biol. 66:963-977.
27. SLATKIN, M., and R. R. HUDSON. 1991. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129:555-562.
28. STRINGER, C. B. 1989. The origin of early modern humans: a comparison of the European and non-European evidence. Pp. 232-244 in P. MELLARS and C. STRINGER, eds. The human revolution: behavioural and biological perspectives on the origins of modem humans. Princeton University Press, Princeton. N.J.
29. TAKEZAKI, N., A. RZHETSKY, and M. NEI. 1995. Phylogenetic test of the molecular clock and linearized trees. Mol. Biol. Evol. 12:823-833.
30. TAMURA, A., and M. NEI. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10:512-523.
31. TEMPLETON, A. R. 1992. Human origins and analysis of mitochondrial DNA sequences. Science 255:737.
32. TORRONI, A., T. G. SCHURR, M. F. CABELL, M. D. BROWN, J. V. NEEL, M. LARSEN, D. G. SMITH, C. M. VULLO, and D. C. WALLACE. 1993a. Asian affinities and continental radiation of the four founding Native American mtDNAs. Am. J. Hum. Genet. 53:563-590.
33. TORRONI, A., R. I. SUKERNJK, T. G. SCHURR, Y. B. STARIKOVSKAYA, M. F. CABELL, M. H. CRAWFORD, A. G. COMUZZIE, and D. C. WALLACE. 1993b. mtDNA variation of aboriginal Siberians reveals distinct genetic affinities with Native Americans. Am. J. Hum. Genet. 53:591-608.
34. VIGILANT, L., R. PENNINGTON, H. HARPENDING, T. D. KOCHER, and A. C. WILSON. 1989. Mitochondrial DNA sequences in single hairs from a southern African population. Proc. Natl. Acad. Sci. USA 86:9350-9354.
35. VIGILANT, L., M. STONEKING, H. HARPENDING, K. HAWKES, and A. C. WILSON. 1991. African populations and the evolution of mitochondrial DNA. Science 253:1503-1507.
36. WAKELEY, J. 1993. Substitution rate variation among sites in hypervariable region 1 of human mitochondrial DNA. J. Mol. Evol. 37:613-623.
37. WARD, R. H., B. L. FRAZIER, K. DEW-JAGER, and S. PAABO. 1991. Extensive mitochondrial diversity within a single Amerindian tribe. Proc. Natl. Acad. Sci. USA 88:8720-8724.
38. WARD, R. H., A. REDD, D. VALENCIA, V. FRAZIER, and S. PàâBO. 1993. Genetic and linguistic differentiation in the Americas. Proc. Natl. Acad. Sci. USA 90:10663-10667.