Organelle DNA phylogeography of Cycas taitungensis, a relict species in Taiwan

Molecular Ecology

Volumn 10, Issue 11, 2001, Pages 2669-2681

  Huang, S ^a   Chiang, Y C ^a,b   Schaal, B A ^c   Chou, C H ^b   Chiang, Tzen Yuh ^d  

^a NATIONAL TAIWAN NORMAL UNIVERSITY   (Taiwan)

^b INSTITUTE OF PLANT AND MICROBIAL BIOLOGY   (Taiwan)

^c WASHINGTON UNIVERSITY   (United States)

^d NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

Author keywords

Coalescence; cpDNA atpB rbcL noncoding spacer; Cycas taitungensis; Intramolecular recombination; Lineage sorting; mtDNA rITS; Relative age

Indexed keywords

CYCAS; DNA, CHLOROPLAST; DNA, MITOCHONDRIAL; DNA, PLANT; DNA, RIBOSOMAL SPACER; ECOSYSTEM; ENZYMES; GENETICS, POPULATION; HAPLOTYPES; LINKAGE DISEQUILIBRIUM; PHYLOGENY; TAIWAN; VARIATION (GENETICS);

CYCADOPSIDA; CYCAS; CYCAS TAITUNGENSIS; EMBRYOPHYTA; GYMNOSPERMAE;

EID: 0035206372     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.0962-1083.2001.01395.x     Document Type: Article

References (83)

1. No genetic variation detected within isolated relict populations of Saxifraga cernua in the Alps using RAPD markers
2. Milankovitch cycles and their effects on species in ecological and evolutionary time
3. Chloroplast and mitochondrial DNA variation as indicator of phylogenetic relationships in the genus Coffea L.
4. Genetic estimates of population structure and gene flow: Limitations, lessons and new directions
5. Genetic diversity in the cycad Macrozamia riedlei
6. Nucleotide sequence and evolution of the 18S ribosomal RNA gene in maize mitochondria
7. Lineage sorting accounting for the disassociation between chloroplast and mitochondrial lineages in oaks of southern France
8. Phylogeography of the endemic plants in Taiwan
9. Phylogeography of ten North American Hylocomium splendens based on nrDNA ITS sequences
10. Molecular evolution and phylogeny of atpB-rbcL noncoding spacer of the chloroplast DNA in the true mosses
11. Universal primers for amplification and sequencing a noncoding spacer between atpB and rbcL genes of chloroplast DNA
12. Rates and patterns of chloroplast DNA evolution
13. Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction
14. Chloroplast DNA phylogeography of the common beech (Fagus sylvatica L.) in Europe
15. The linkage disequilibrium between chloroplast DNA and mitochondrial DNA haplotypes in Beta vulgaris ssp. maritima (L.): The usefulness of both genomes for population genetic studies
16. The role of insects in the pollination of Encephalartos cycadifolius
17. The ages of alleles and a coalescent
18. Association between chloroplast and mitochondrial lineages in oaks
19. Phylogeographical structure of the white oaks throughout the European continent
20. Chloroplast DNA phylogeography of the argan tree of Morocco
21. Genetic structure of the Australian cycad, Macrozamia communis (Zamiaceae)
22. Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: Molecular variance parsimony
23. The maize mitochondrial genome: Dynamic, yet functional
24. Confidence limits on phylogenies: An approach using the bootstrap
25. Chloroplast DNA recognizes three refugia sources of European oaks and suggests independent eastern and western immigrations to Finland
26. Multiple substitutions create biased estimates of divergence times and small increases in the variance to mean ratio
27. A likelihood method for the detection of selection and recombination using nucleotide sequences
28. Consequences of dispersal in plants
29. Chloroplast DNA and biosystematics: The effects of intraspecific diversity and plastid transmission
30. Cycas - An evolutionary perspective
31. An empirical test of bootstrapping as a method assessing confidence in phylogenetic analysis
32. The effects of social structure, geographical structure, and population size on the evolution of mitochondrial DNA: II. Molecular clocks and the lineage sorting period
33. Chloroplast DNA diversity among trees, populations and species in the California close-cone pines (Pinus radiata, Pinus muricata, and Pinus attenuata)
34. Patterns of genetic variation and demography of Cycas taitungensis in Taiwan
35. Comparative study on the chloroplast, mitochondrial and nuclear genome differentiation in two cultivated rice species, Oryza sativa and O. glaberrima, by RFLP analyses
36. Cycadophytina
37. Evolution of protein molecules
38. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
39. Chloroplast DNA phylogeography of Alnus glutinosa (L.) Gaertn
40. Paleogeography of the Ryukyu Islands
41. Mitochondrial DNA variation follows a geographic pattern in Japanese beech species
42. Physical and gene organization of mitochondrial DNA from the fertile cytoplasm of sugarbeet (Beta vulgaris L.)
43. Chloroplast and mitochondrial DNA diversity in Theobroma cacao
44. Organization and expression of the mitochondrial genome in the Nicotoanum sylvestris CMSII mutant
45. Low genetic diversity of Cycas taitungensis (Cycaceae), an endemic species in Taiwan, revealed by allozyme analysis
46. The plant mitochondrial genome: Homologous recombinations as a mechanism for generating heterogeneity
47. Chloroplast DNA phylogeography of Cunninghamia konishii (Cupressaceae) an endemic conifer of Taiwan
48. Mitochondrial DNA polymorphism and phylogenetic relationships in Hevea brasiliensis
49. Comparison of the evolution of ribulose-1, 5-biphosphate carboxylase (rbcL) and atpB-rbcL noncoding spacer sequences in a recent plant group, the tribe Rubieae (Rubiaceae)
50. Founder effects and sex ratio in the gyndioeciuos Thymus vulgaris L.
51. Is organelle DNA strictly maternally inherited? Power analysis of a binomial distribution
52. Inferring phylogenies from mtDNA variation: Mitochondrial-gene trees versus nuclear-gene trees
53. Rapid isolation of high molecular weight DNA
54. Maximum likelihood estimation of the number of nucleotide substitutions from restriction sites data
55. Location, identity, amount and serial entry of chloroplast DNA sequences in crucifer mitochondrial DNAs
56. The world list of cycads
57. Pollination in conifers
58. Chloroplast DNA footprints of postglacial recolonization by oaks
59. Organelle inheritance in plants
60. Mitochondrial DNA diversity and male sterility in natural populations of Daucus carota ssp. Carota
61. DNASP, Version 3.0: An integrated program for molecular population genetics and molecular evolution analysis
62. Gene genealogies and population variation in plants
63. Definition and properties of disequilibrium within nuclear-mitochondrial-chloroplast and other nuclear-dicytoplasmic systems
64. Recombination events across the atpA-associated repeated sequences in the mitochondrial genomes of beets
65. Pollen analysis of the Cretaceous sediments in Taiwan
66. Isolation by distance in equilibrium and nonequilibrium populations
67. Recombination sequences in plant mitochondrial genomes: Diversity and homologies to known mitochondrial genes
68. High levels of population differentiation for mitochondrial DNA haplotypes in Pinus radiata, muricata, and attenuata
69. Construction of evolutionary distance trees with TREECON for Windows: Accounting for variation in nucleotide substitution rate among sites
70. Extinction and recolonization: Their effects on the genetic differentiation of local populations
71. Patterns of allozyme diversity in the west Indies cycad Zamia pumila (Zamiaceae)
72. ST ≠ 1/(4Nm + 1)
73. The Cycas pectinata (Cycadaceae) complex: Genetic structure and gene flow
74. Genetic variation in Chinese cycad population
75. Homologous recombination involving cox2 is responsible for a mutation in the cmS-specific mitochondrial locus of Petunia
76. A review of fossil cycad megasporophylls, with new evidence of Crossozamia Pomel and its associated leaves from the lower Permian of Taiyuan, China