Genetic diversity and structure of natural populations of Plathymenia reticulata (Mimosoideae), a tropical tree from the Brazilian Cerrado

Molecular Ecology

Volumn 10, Issue 5, 2001, Pages 1143-1152

  Lacerda, D R ^a   Acedo, M D P ^a   Lemos Filho, J P ^a   Lovato, M B ^a  

^a FEDERAL UNIVERSITY OF MINAS GERAIS   (Brazil)

Author keywords

Cerrado; Conservation genetics; Plathymenia reticulata; Population genetics; RAPD; Tropical tree

Indexed keywords

ANALYSIS OF MOLECULAR VARIANCE; BRAZIL; ENVIRONMENTAL CONSERVATION; GENETIC DIFFERENCE; GENETIC DIVERSITY; GENETIC POLYMORPHISM; GENETIC VARIABILITY; MOLECULAR ECOLOGY; OUTCROSSING; PHENOTYPE; POPULATION STRUCTURE; RANDOM AMPLIFIED POLYMORPHIC DNA; WOOD;

BRAZIL; DNA PRIMERS; GENETIC MARKERS; GENETICS, POPULATION; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; TREES;

EMBRYOPHYTA; MIMOSOIDEAE; PLATHYMENIA RETICULATA;

EID: 0035018022     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2001.01264.x     Document Type: Article

References (56)

1. Aagaard JE, Krutovskii KV, Strauss SH (1998) RAPDs and allozymes exhibit similar levels of diversity and differentiation among populations and races of Douglas-fir. Heredity, 81, 69-78.
2. Adámoli J, Macedo J, Azevedo LG, Madeira Neto J (1985) Caracterização da região dos Cerrados. In: Solos Dos Cerrados: Tecnologias E Estratégias de Manejo (ed. Goedert WJ), pp. 33-74. EMBRAPA and Nobel Press, São Paulo.
3. Aldrich PR, Hamrick JL, Chavarriaga P, Kochert G (1998) Microsatellite analysis of demographic genetic structure in fragmented populations of the tropical tree Symphonia globulifera. Molecular Ecology, 7, 933-944.
4. Almeida SP, Proença CEB, Sano SM (1998) Cerrado: Espécies Vegetais Úteis. EMBRAPA-CPAC, Planaltina.
5. Bawa KS (1990) Plant-pollinator interactions in tropical rain forests. Annual Review of Ecology and Systematics, 21, 399-422.
6. Cardoso MA, Provan J, Powell W, Ferreira PCG, Oliveira DE (1998) High genetic differentiation among remnant populations of the endangered Caesalpinea echinata Lam. (Leguminosae - Caesalpinioideae). Molecular Ecology, 7, 601-608.
7. Chalmers KJ, Waugh R, Sprent JI, Simons AJ, Powell W (1992) Detection of genetic variation between and within populations of Gliricidia sepium and G. maculata using RAPD markers. Heredity, 69, 465-472.
8. Chase MR, Boshier DH, Bawa KS (1995) Population genetics of Cordia alliodora (Boraginaceae), a neotropical tree. 1. Genetic variation in natural populations. American Journal of Botany, 82, 468-475.
9. Cooper ML (2000) Random amplified polymorphic DNA analysis of southern brown bandicoot (Isoodon obesulus) populations in Western Australia reveals genetic differentiation related to environmental variables. Molecular Ecology, 9, 469-479.
10. Dayanandan S, Dole J, Bawa K, Kesseli R (1999) Population structure delineated with microsatellite markers in fragmented populations of a tropical tree, Carapa guianensis (Meliaceae). Molecular Ecology, 8, 1585-1592.
11. Doyle JJ, Doyle JL (1987) Isolation of plant DNA from fresh tissue. Focus, 12, 13-15.
12. Eiten G (1972) The cerrado vegetation of Brazil. The Botanical Review, 38, 201-341.
13. Ellsworth DL, Rittenhouse KD, Honeycutt RL (1993) Artifactual variation in randomly amplified polymorphic DNA banding patterns. 'Biotechniques, 14, 214-217.
14. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
15. Fritsch P, Rieseberg LH (1996) The use of Random Amplified Polymorphic DNA (RAPD) in conservation genetics. In: Molecular Genetic Approaches in Conservation (eds Smith TB, Wayne RK), pp. 54-73. Oxford University Press, New York.
16. Hadrys H, Balick M, Schierwater B (1992) Applications of random amplified polymorphic DNA (RAPD) in molecular ecology. Molecular Ecology, 1, 55-63.
17. Haig SM, Rhymer JM, Heckel DG (1994) Population differentiation in randomly amplified polymorphic DNA of red-cockaded woodpeckers Picoides borealis. Molecular Ecology, 3, 581-595.
18. Hamrick JL, Loveless MD (1989) The genetic structure of tropical tree populations: associations with reprodutive biology. In: The Evolutionary Ecology of Plants (eds Bock JH, Linhart YB), pp. 129-146. Westview Press, Boulder.
19. Hamrick JL, Godt MJW (1989) Allozyme diversity in plant species. In: Plant Population Genetics, Breeding, and Genetic Resources (eds Brown AHD, Clegg MT, Kahler AL, Weir BS), pp. 43-63. Sinauer Associates, Sunderland.
20. Hartl DL, Clark AG (1989) Principles of Population Genetics. Sinauer Associates, Sunderland.
21. Heringer EP, Ferreira MB (1972) Árvores úteis no cerrado (I): Vinhático - o gênero Plathymenia Benth. P. foliolosa Benth. e P. reticulata Benth., vinhático da mata e vinhático do campo (par vicariante). Cerrado, 5, 28-34.
22. 1 hybrids of corn. Theoretical and Applied Genetics, 85, 961-968.
23. Heun M, Murphy JP, Phillips TD (1994) A comparison of RAPD and isozyme analyses for determining the genetic relationships among Avena sterilis L. accessions. Theoretical and Applied Genetics, 87, 689-696.
24. Holsinger KE, Gottlieb LD (1991) Conservation of rare and endangered plants: principles and prospects. In: Genetics and Conservation of Rare Plants (eds Falk DA, Holsinger KE), pp. 195-223. Oxford University Press, New York.
25. Huff DR, Peakall R, Smouse PE (1993) RAPD variation within and among natural populations of outcrossing buffalograss [Buchloë dactyloides (Nutt.) Engelm.]. Theoretical and Applied Genetics, 86, 927-934.
26. King LM, Schaal BA (1989) Ribosomal-DNA variation and distribution in Rudbeckia missouriensis. Evolution, 43, 1117-1119.
27. Lewontin RC (1972) The apportionment of human diversity. Evolutionary Biology, 6, 381-398.
28. Lynch M, Milligan BG (1994) Analysis of population genetic structure with RAPD markers. Molecular Ecology, 3, 91-99.
29. Meunier JR, Grimont PAD (1993) Factors affecting reproducibility of random amplified polymorphic DNA fingerprinting. Research in Microbiology, 144, 373-379.
30. Milligan BG, Leebens-Mack J, Strand AE (1994) Conservation genetics: beyond the maintenance of marker diversity. Molecular Ecology, 3, 423-435.
31. Mockford SW, Snyder M, Herman TB (1999) A preliminary examination of genetic variation in a peripheral population of Blanding's turtle, Emydoidea blandingii. Molecular Ecology, 8, 323-327.
32. Morden CW, Loeffler W (1999) Fragmentation and genetic differentiation among subpopulations of the endangered Hawaiian mint Haplostachys haplostachya (Lamiaceae). Molecular Ecology, 8, 617-625.
33. Myers N, Mittermeier RA, Mittermeier CG, Fonseca GAB, Kent J (2000) Biodiversity hotsposts for conservation priorities. Nature, 403, 853-858.
34. Nason JD, Aldrich PR, Hamrick JL (1997) Dispersal and the dynamics of genetic structure in fragmented tropical tree populations. In: Tropical Forest Remnants: Ecology, Management and Conservation of Fragmented Communities (eds Laurence WF, Bierregaard RO), pp. 304-320. University of Chicago Press, Chicago.
35. Newton AC, Allnut TR, Gillies ACM, Lowe AJ, Ennos RA (1999) Molecular phylogeography intraspecific variation and the conservation of tree species. Trends in Ecology and Evolution, 14, 140-145.
36. Palacios C, Gonźlez-Candelas F (1997) Analysis of population genetic structure and variability using RAPD markers in the endemic and endangered Limonium dufourii (Plumbaginaceae). Molecular Ecology, 6, 1107-1121.
37. Parker PG, Snow AA, Schug MD, Booton GC, Fuerst PA (1998) What molecules can tell us about populations: choosing and using a molecular marker. Ecology, 79, 361-382.
38. Penner GA (1996) RAPD analysis of plant genomes. In: Methods of Genome Analysis in Plants (ed. Jauhar PP), pp. 252-268. CRC Press, Boca Raton.
39. Pérez T, Albornoz J, Dominguez A (1998) An evaluation of RAPD fragment reproducibility and nature. Molecular Ecology, 7, 1347-1357.
40. Ratter JA, Bridgewater S, Atkinson R, Ribeiro JF (1996) Analysis of the floristic composition of the Brazilian Cerrado vegetation II: comparison of the woody vegetation of 98 areas. Edinburgh Journal of Botany, 53, 153-180.
41. Reis MS (1996) Dinâmica da movimentação dos alelos: subsídios para conservação e manejo de populações naturais em plantas. Brazilian Journal of Genetics, 19, 37-47.
42. 13C. Geoderma, 95, 141-160.
43. Rossetto M, Weaver PK, Dixon KW (1995) Use of RAPD analysis in devising conservation strategies for the rare and endangered Grevillea scapigera (Proteaceae). Molecular Ecology, 4, 321-329.
44. Schierenbeck KA, Skupski M, Lieberman D, Lieberman M (1997) Population structure and genetic diversity in four tropical tree species in Costa Rica. Molecular Ecology, 6, 137-144.
45. Shaffer CL (1995) Values and shortcomings of small reserves. Bioscience, 45, 80-88.
46. Smith JF, Pham TV (1996) Genetic diversity of the narrow endemic Allium aaseae (Alliaceae). American Journal of Botany, 83, 717-726.
47. Stewart CN Jr, Excoffier L (1996) Assessing population genetic structure and variability with RAPD data: application to Vaccinium macrocarpon (American Cranberry). Journal of Evolutionary Biology, 9, 153-171.
48. Sun GL, Díaz O, Salomon B, Von Bothmer R (1998) Microsatellite variation and its comparison with allozyme and RAPD variation in Elymus fribrosus (Schrenk) Tzvel. (Poaceae). Hereditas, 129, 275-282.
49. Toledo J, Dehal P, Jarrin F, Hu J, Hermann M, Al-Shehbaz I, Quiros CF (1998) Genetic variability of Lepidium meyenii and other Andean Lepidium species (Brassicaceae) assessed by molecular markers. Annals of Botany, 82, 523-530.
50. Turner IM, Corlett RT (1996) The conservation value of small, isolated fragments of lowland tropical rain forest. Trends in Ecology and Evolution, 11, 330-333.
51. Williams JGK, Kubelik AR, Livak KJ, Rafalski JÁ, Tingey SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research, 18, 6531-6535.
52. Wolff K, El-Akkad S, Abbott RJ (1997) Population substructure in Alkanna oricntalis (Boraginaceae) in the Sinai Desert, in relation to its pollinator behaviour. Molecular Ecology, 6, 365-372.
53. Wright S (1951) The genetical structure of populations. Annals of Eugenetics, 15, 323-354.
54. Wright S (1978) Evolution and the Genetics of Populations, Variability Within and Among Natural Populations, Vol. 4. University of Chicago Press, Chicago.
55. Yeh FC, Chong DKX, Yang RC (1995) RAPD variation within and among natural populations of trembling aspen (Populus tremuloides Michx.) from Alberta. Journal of Heredity, 86, 454-460.
56. Young A, Boyle T, Brown T (1996) The population genetic consequences of habitat fragmentation for plants. Trends in Ecology and Evolution, 11, 413-418.