Discrete gene sets depend on POU domain transcription factor Brn3b/Brn-3.2/POU4f2 for their expression in the mouse embryonic retina

Development

Volumn 131, Issue 6, 2004, Pages 1197-1210

  Mu, Xiuqian ^a   Beremand, Phillip D ^b   Zhao, Sheng ^a   Pershad, Rashmi ^a   Sun, Hongxia ^a   Scarpa, Ann ^a   Liang, Shuguang ^a   Thomas, Terry L ^b   Klein, William H ^a  

^a UNIVERSITY OF TEXAS   (United States)

^b TEXAS A AND M UNIVERSITY   (United States)

Author keywords

Brn3b Brn 3.2 POU4f2; Microarray gene expression profiling; Mouse embryonic retina; POU domain transcription factor

Indexed keywords

COMPLEMENTARY DNA; HOMEODOMAIN PROTEIN; MYOSTATIN; SONIC HEDGEHOG PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR POU4F2; UNCLASSIFIED DRUG;

ANIMAL CELL; CELL DIFFERENTIATION; CELL SURVIVAL; CONTROLLED STUDY; DEVELOPMENTAL STAGE; DNA FLANKING REGION; DNA MICROARRAY; EMBRYO; EMBRYO DEVELOPMENT; FEMALE; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE FUNCTION; GENE MUTATION; GENE NUMBER; GENETIC CODE; GENETIC IDENTIFICATION; GENETIC LINKAGE; GENETIC REGULATION; IN SITU HYBRIDIZATION; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN DOMAIN; RETINA DEVELOPMENT; RETINA GANGLION CELL; REVIEW; RNA PROBE; SIGNAL TRANSDUCTION; WILD TYPE;

ANIMALS; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; HEDGEHOG PROTEINS; HOMEODOMAIN PROTEINS; MICE; NEURONS; RETINA; SIGNAL TRANSDUCTION; TRANS-ACTIVATORS; TRANSCRIPTION FACTOR BRN-3B; TRANSCRIPTION FACTORS;

ANIMALIA; ERINACEIDAE;

EID: 1842454979     PISSN: 09501991     EISSN: None     Source Type: Journal    
DOI: 10.1242/dev.01010     Document Type: Review

References (60)

1. Austin, C. P., Feldman, D. E., Ida, J. A., Jr and Cepko, C. L. (1995). Vertebrate retinal ganglion cells are selected from competent progenitors by the action of Notch. Development 121, 3637-3650.
2. Bermingham, J. R., Jr, Shumas, S., Whisenhunt, T., Sirkowski, E. E., O'Connell, S., Scherer, S. S. and Rosenfeld, M. G. (2002). Identification of genes that are downregulated in the absence of the POU domain transcription factor pou3f1 (Oct-6, Tst-1, SCIP) in sciatic nerve. J. Neurosci. 22, 10217-10231.
3. Brown, N. L., Kanekar, S., Vetter, M. L., Tucker, P. K., Gemza, D. L. and Glaser, T. (1998). Math5 encodes a murine basic helix-loop-helix transcription factor expressed during early stages of retinal neurogenesis. Development 125, 4821-4833.
4. Brown, N. L., Patel, S., Brzezinski, J. and Glaser, T. (2001). Math5 is required for retinal ganglion cell and optic nerve formation. Development 128, 2497-2508.
5. Buchman, V. L., Adu, J., Pinon, L. G., Ninkina, N. N. and Davies, A. M. (1998). Persyn, a member of the synuclein family, influences neurofilament network integrity. Nat. Neurosci. 1, 101-103.
6. Budhram-Mahadeo, V., Ndisang, D., Ward, T., Weber, B. L. and Latchman, D. S. (1999). The Brn-3b POU family transcription factor represses expression of the BRCA-1 anti-oncogene in breast cancer cells. Oncogene 18, 6684-6691.
7. Campbell, D. S., Regan, A. G., Lopez, J. S., Tannahill, D., Harris, W. A. and Holt, C. E. (2001). Semaphorin 3A elicits stage-dependent collapse, turning, and branching in Xenopus retinal growth cones. J. Neurosci. 21, 8538-8547.
8. Cohen, D. R., Cheng, C. W., Cheng, S. H. and Hui, C. C. (2000). Expression of two novel mouse Iroquois homeobox genes during neurogenesis. Mech. Dev. 91, 317-321.
9. Dakubo, G. D., Wang, Y. P., Mazerolle, C., Campsall, K., McMahon, A. P. and Wallace, V. A. (2003). Retinal ganglion cell-derived sonic hedgehog signaling is required for optic disc and stalk neuroepithelial cell development. Development 130, 2967-2980.
10. Dorsky, R. I., Rapaport, D. H. and Harris, W. A. (1995). Xotch inhibits cell differentiation in the Xenopus retina. Neuron 14, 487-496.
11. Dubois, L. and Vincent, A. (2001). The COE-Collier/Olf1/EBF-transcription factors: Structural conservation and diversity of developmental functions. Mech. Dev. 108, 3-12.
12. Dyer, M. A. and Cepko, C. L. (2001). Regulating proliferation during retinal development. Nat. Rev. Neurosci. 2, 333-342.
13. Erkman, L., McEvilly, R. J., Luo, L., Ryan, A. K., Hooshmand, F., O'Connell, S. M., Keithley, E. M., Rapaport, D. H., Ryan, A. F. and Rosenfeld, M. G. (1996). Role of transcription factors Brn-3.1 and Brn-3.2 in auditory and visual system development. Nature 381, 603-606.
14. Erkman, L., Yates, P. A., McLaughlin, T., McEvilly, R. J., Whisenhunt, T., O'Connell, S. M., Krones, A. I., Kirby, M. A., Rapaport, D. H., Bermingham, J. R. et al. (2000). A POU domain transcription factor-dependent program regulates axon pathfinding in the vertebrate visual system. Neuron 28, 779-792.
15. Gan, L., Xiang, M., Zhou, L., Wagner, D. S., Klein, W. H. and Nathans, J. (1996). POU domain factor Brn-3b is required for the development of a large set of retinal ganglion cells. Proc. Natl. Acad. Sci. USA 93, 3920-3925.
16. Gan, L., Wang, S. W., Huang, Z. and Klein, W. H. (1999). POU domain factor Brn-3b is essential for retinal ganglion cell differentiation and survival but not for initial cell fate specification. Dev. Biol. 210, 469-480.
17. Garcia, M. L. and Cleveland, D. W. (2001). Going new places using an old MAP: Tau, microtubules and human neurodegenerative disease. Curr. Opin. Cell Biol. 13, 41-48.
18. Gerber, W. V., Yatskievych, T. A., Antin, P. B., Correia, K. M., Conlon, R. A. and Krieg, P. A. (1999). The RNA-binding protein gene, hermes, is expressed at high levels in the developing heart. Mech. Dev. 80, 77-86.
19. Girard, C., Tinel, N., Terrenoire, C., Romey, G., Lazdunski, M. and Borsotto, M. (2002). p11, an annexin II subunit, an auxiliary protein associated with the background K+ channel, TASK-1. EMBO J. 21, 4439-4448.
20. Gruber, C. A., Rhee, J. M., Gleiberman, A. and Turner, E. E. (1997). POU domain factors of the Brn-3 class recognize functional DNA elements which are distinctive, symmetrical, and highly conserved in evolution. Mol. Cell Biol. 17, 2391-2400.
21. Grunwald, I. C. and Klein, R. (2002). Axon guidance: Receptor complexes and signaling mechanisms. Curr. Opin. Neurobiol. 12, 250-259.
22. Hamre, K. M., Chepenik, K. P. and Goldowitz, D. (1995). The annexins: Specific markers of midline structures and sensory neurons in the developing murine central nervous system. J. Comp. Neurol. 352, 421-435.
23. He, Z., Wang, K. C., Koprivica, V., Ming, G. and Song, H. J. (2002). Knowing how to navigate: Mechanisms of semaphorin signaling in the nervous system. Sci. STKE, RE1.
24. Hegde, P., Qi, R., Abernathy, K., Gay, C., Dharap, S., Gaspard, R., Hughes, J. E., Snesrud, E., Lee, N. and Quackenbush, J. (2000). A concise guide to cDNA microarray analysis. Biotechniques 29, 548-550, 552-554, 556.
25. Ibata, K., Hashikawa, T., Tsuboi, T., Terakawa, S., Liang, F., Mizutani, A., Fukuda, M. and Mikoshiba, K. (2002). Non-polarized distribution of synaptotagmin IV in neurons: Evidence that synaptotagmin IV is not a synaptic vesicle protein. Neurosci. Res. 43, 401-406.
26. Ingham, P. W. and McMahon, A. P. (2001). Hedgehog signaling in animal development: Paradigms and principles. Genes Dev. 15, 3059-3087.
27. Jin, Z., Zhang, J., Klar, A., Chedotal, A., Rao, Y., Cepko, C. L. and Bao, Z. Z. (2003). Irx4-mediated regulation of Slit1 expression contributes to the definition of early axonal paths inside the retina. Development 130, 1037-1048.
28. Julien, J. P. (1999). Neurofilament functions in health and disease. Curr. Opin. Neurobiol. 9, 554-560.
29. Lavedan, C. (1998). The synuclein family. Genome Res. 8, 871-880.
30. Levavasseur, F., Zhu, Q. and Julien, J. P. (1999). No requirement of alpha-internexin for nervous system development and for radial growth of axons. Mol. Brain Res. 69, 104-112.
31. Livesey, F. J., Furukawa, T., Steffen, M. A., Church, G. M. and Cepko, C. L. (2000). Microarray analysis of the transcriptional network controlled by the photoreceptor homeobox gene Crx. Curr. Biol. 10, 301-310.
32. Ma, C., Papermaster, D. and Cepko, C. L. (1998). A unique pattern of photoreceptor degeneration in cyclin D1 mutant mice. Proc. Natl. Acad. Sci. USA 95, 9938-9943.
33. Masson, J., Sagne, C., Hamon, M. and El Mestikawy, S. (1999). Neurotransmitter transporters in the central nervous system. Pharmacol. Rev. 51, 439-464.
34. McEvilly, R. J. and Rosenfeld, M. G. (1999). The role of POU domain proteins in the regulation of mammalian pituitary and nervous system development. Prog. Nucleic Acid Res. Mol. Biol. 63, 223-255.
35. McPherron, A. C., Lawler, A. M. and Lee, S. J. (1997). Regulation of skeletal muscle mass in mice by a new TGF-beta superfamily member. Nature 387, 83-90.
36. Mu, X., Zhao, S., Pershad, R., Hsieh, T. F., Scarpa, A., Wang, S. W., White, R. A., Beremand, P. D., Thomas, T. L., Gan, L. et al. (2001). Gene expression in the developing mouse retina by EST sequencing and microarray analysis. Nucleic Acids Res. 29, 4983-4993.
37. Mummenhoff, J., Houweling, A. C., Peters, T., Christoffels, V. M. and Ruther, U. (2001). Expression of Irx6 during mouse morphogenesis. Mech. Dev. 103, 193-195.
38. Nakashima, M., Tanese, N., Ito, M., Auerbach, W., Bai, C., Furukawa, T., Toyono, T., Akamine, A. and Joyner, A. L. (2002). A novel gene, GliH1, with homology to the Gli zinc finger domain not required for mouse development. Mech. Dev. 119, 21.
39. Neumann, C. J. and Nuesslein-Volhard, C. (2000). Patterning of the zebrafish retina by a wave of sonic hedgehog activity. Science 289, 2137-2139.
40. Ng, L., Hurley, J. B., Dierks, B., Srinivas, M., Salto, C., Vennstrom, B., Reh, T. A. and Forrest, D. (2001). A thyroid hormone receptor that is required for the development of green cone photoreceptors. Nat. Genet. 27, 94-98.
41. Ninkina, N., Papachroni, K., Robertson, D. C., Schmidt, O., Delaney, L., O'Neill, F., Court, F., Rosenthal, A., Fleetwood-Walker, S. M., Davies, A. M. et al. (2003). Neurons expressing the highest levels of gamma-synuclein are unaffected by targeted inactivation of the gene. Mol. Cell Biol. 23, 8233-8245.
42. O'Connor, V. and Lee, A. G. (2002). Synaptic vesicle fusion and synaptotagmin: 2B or not 2B? Nat. Neurosci. 5, 823-824.
43. Okuse, K., Malik-Hall, M., Baker, M. D., Poon, W. Y., Kong, H., Chao, M. V. and Wood, J. N. (2002). Annexin II light chain regulates sensory neuron-specific sodium channel expression. Nature 417, 653-656.
44. Panganiban, G. and Rubenstein, J. L. (2002). Developmental functions of the Distal-less/Dlx homeobox genes. Development 129, 4371-4386.
45. Plaza, S., Hennemann, H., Moroy, T., Saule, S. and Dozier, C. (1999). Evidence that POU factor Brn-3B regulates expression of Pax-6 in neuroretina cells. J. Neurobiol. 41, 349-358.
46. Quackenbush, J. (2002). Microarray data normalization and transformation. Nat. Genet. Suppl. 496-501.
47. Trieu, M., Rhee, J. M., Fedtsova, N. and Turner, E. E. (1999). Autoregulatory sequences are revealed by complex stability screening of the mouse brn-3.0 locus. J. Neurosci. 19, 6549-6558.
48. Van Gelder, R. N., von Zastrow, M. E., Yool, A., Dement, W. C., Barchas, J. D. and Eberwine, J. H. (1990). Amplified RNA synthesized from limited quantities of heterogeneous cDNA. Proc. Natl. Acad. Sci. USA 87, 1663-1667.
49. von Poser, C. and Sudhof, T. C. (2001). Synaptotagmin 13: structure and expression of a novel synaptotagmin. Eur. J. Cell Biol. 80, 41-47.
50. Wagner, N., Wagner, K. D., Schley, G., Coupland, S. E., Heimann, H., Grantyn, R. and Scholz, H. (2002). The Wilms' tumor suppressor Wt1 is associated with the differentiation of retinoblastoma cells. Cell Growth Differ. 13, 297-305.
51. Wang, S. W., Gan, L., Martin, S. E. and Klein, W. H. (2000). Abnormal polarization and axon outgrowth in retinal ganglion cells lacking the POU-domain transcription factor Brn-3b. Mol. Cell Neurosci. 16, 141-156.
52. Wang, S. W., Kim, B. S., Ding, K., Wang, H., Sun, D., Johnson, R. L., Klein, W. H. and Gan, L. (2001). Requirement for math5 in the development of retinal ganglion cells. Genes Dev. 15, 24-29.
53. Wang, S. W., Mu, X., Bowers, W. J., Kim, D. S., Plas, D. J., Crair, M. C., Federoff, H. J., Gan, L. and Klein, W. H. (2002a). Brn3b/Brn3c double knockout mice reveal an unsuspected role for Brn3c in retinal ganglion cell axon outgrowth. Development 129, 467-477.
54. Wang, Y. P., Dakubo, G., Howley, P., Campsall, K. D., Mazarolle, C. J., Shiga, S. A., Lewis, P. M., McMahon, A. P. and Wallace, V. A. (2002b). Development of normal retinal organization depends on Sonic hedgehog signaling from ganglion cells. Nat. Neurosci. 5, 831-832.
55. Wegner, M., Drolet, D. W. and Rosenfeld, M. G. (1993). POU-domain proteins: Structure and function of developmental regulators. Curr. Opin. Cell Biol. 5, 488-498.
56. Wu, H. H., Ivkovic, S., Murray, R. C., Jaramillo, S., Lyons, K. M., Johnson, J. E. and Calof, A. L. (2003). Autoregulation of Neurogenesis by GDF11. Neuron 37, 197-207.
57. Xiang, M., Gan, L., Li, D., Zhou, L., Chen, Z. Y., Wagner, D., O'Malley, B. W., Jr, Klein, W. and Nathans, J. (1997). Role of the Brn-3 family of POU-domain genes in the development of the auditory/vestibular, somatosensory, and visual systems. Cold Spring Harb. Symp. Quant. Biol. 62, 325-336.
58. Yun, K., Fischman, S., Johnson, J., de Angelis, M. H., Weinmaster, G. and Rubenstein, J. L. (2002). Modulation of the notch signaling by Mash1 and Dlx1/2 regulates sequential specification and differentiation of progenitor cell types in the subcortical telencephalon. Development 129, 5029-5040.
59. Zhang, X. M. and Yang, X. J. (2001a). Regulation of retinal ganglion cell production by Sonic hedgehog. Development 128, 943-957.
60. Zhang, X. M. and Yang, X. J. (2001b). Temporal and spatial effects of Sonic hedgehog signaling in chick eye morphogenesis. Dev. Biol. 233, 271-290.