Promiscuous catalysis by the tetrahymena group I ribozyme

Journal of the American Chemical Society

Volumn 127, Issue 17, 2005, Pages 6160-6161

  Forconi, Marcello ^a   Herschlag, Daniel ^a  

^a STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOZYME;

ARTICLE; CATALYSIS; CHEMICAL REACTION; ENZYME ANALYSIS; NONHUMAN; RNA ANALYSIS; TETRAHYMENA;

ANIMALS; CATALYSIS; GUANOSINE; KINETICS; PHOSPHONIC ACIDS; RNA, CATALYTIC; SUBSTRATE SPECIFICITY; TETRAHYMENA;

EID: 18244402193     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja050180i     Document Type: Article

References (36)

1. (a) Gilbert, W. Nature 1986, 319, 618.
2. (b) Gesteland, R. F., Cech, T. R., Atkins, J. F., Eds. The RNA World, 2nd ed.; Cold Spring Harbor Laboratory Press: Plainview, NY, 1999.
3. (c) Bartel, D. P.; Unrau, P. J. Trends Biochem. Sci. 1999, 24, M9-M13.
4. (d) Joyce, G. F. Nature 2002, 418, 214-221.
5. (a) White, H. B. J. Mol. Evol. 1976, 7, 101-104.
6. (b) Jadhav, V. R.; Yarus, M. Biochimie 2002, 84, 877-888.
7. Lilley, D. M. J. Trends Biochem. Sci. 2003, 28, 495-501.
8. (a) Bartel, D.P.; Szostak, J. W. Science 1993, 261, 1411-1418.
9. (b) Lorsch, J. R.; Szostak, J. W. Nature 1994, 371, 31-36.
10. (c) Unrau, P. J.; Bartel, D. P. Nature 1998, 395, 260-263.
11. (d) Tsukiji, S.; Pattnaik, S. B.; Suga, H. Nat. Struct. Biol. 2003, 10, 713-717.
12. (e) Lau, M. W. L.; Cadieux, K. E. C.; Unrau, P. J. J. Am. Chem. Soc. 2004, 126, 15686-15693. See also ref 1c.
13. (a) Jensen, R. A. Annu. Rev. Microbiol 1976, 30, 409-425.
14. (b) O'Brien, P. J.; Herschlag, D. Chem. Biol. 1999, 6, R91-R105.
15. (c) Copley, S. D. Curr. Opin. Chem. Biol. 2003, 7, 265-272.
16. (a) Zaug, A. J.; Cech, T. R. Biochemistry 1986, 25, 4478-4482.
17. (b) Piccirilli, J. A.; McConnell, T. S.; Zaug, A. J.; Noller, H. F.; Cech, T. R. Science 1992, 256, 1420-1424.
18. (c) Schultes, E. A.; Bartel, D. P. Science 2000, 289, 448-452.
19. (d) Hamm, M. L.; Schwans, J. P.; Piccirilli, J. A. J. Am. Chem. Soc. 2000, 122, 4223-4224.
20. Shan, S.; Kravchuk, A.; Piccirilli, J. A.; Herschlag, D. Biochemistry 2001, 40, 5161-5171 and references therein.
21. non is the second-order rate constant for the uncatalyzed reaction.
22. Catrina, I. E.; Hengge, A. C. J. Am. Chem. Soc. 2003, 125, 7546-7552.
23. (a) Herschlag, D.; Cech, T. R. Biochemistry 1990, 29, 10159-10171.
24. (b) Williams, N. H.; Wyman, P. Chem. Commun. 2001, 1268-1269.
25. Brown, D. M.; Magrath, D. I.; Todd, A. R. J. Chem. Soc. 1955, 4396-4401.
26. (a) Herschlag, D.; Piccirilli, J. P.; Cech, T. R. Biochemistry 1991, 30, 4844-4854.
27. (b) Rajagopal, J.; Doudna, J. A.; Szostak, J. W. Science 1989, 244, 692-694.
28. (c) Brautigam, C. A.; Steitz, T. A. J. Mol. Biol. 1998, 277, 363-377.
29. a's of leaving group and nucleophile according to Khan, S. A.; Kirby, A. J. J. Chem. Soc. (B) 1970, 1172-1182.
30. a's of leaving group and nucleophile according to Khan, S. A.; Kirby, A. J. J. Chem. Soc. (B) 1970, 1172-1182.
31. Sjögren, A.-S.; Pettersson, E.; Sjöberg, B.-M.; Strömberg, R. Nucleic Acid Res. 1997, 25, 648-653.
32. Moran, S.; Kierzek, R.; Turner, D. H. Biochemistry 1993, 32, 5247-5256.
33. Watanabe, S.; Kawai, G.; Muto, Y.; Watanabe, K.; Inoue, T.; Yokoyama, S. Nucleic Acid Res. 1996, 24, 1337-1344.
34. Suga, H.; Cowan, J. A.; Szostak, J. W. Biochemistry 1998, 37, 10118-10125.
35. (a) Bennett, M. J.; Schlunegger, M. P.; Eisenberg, D. Protein Sci. 1995, 4, 2455-2468.
36. (b) Heringa, J.; Taylor, W. R. Curr. Opin. Struct. Biol. 1997, 7, 416-421.