-
1
-
-
0000801240
-
Discovering regulatory and signalling circuits in molecular interaction networks
-
Ideker T, Ozier O, Schwikowski B, Siegel AF: Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics 2002;18(Suppl 1):S233-S240.
-
(2002)
Bioinformatics
, vol.18
, Issue.1 SUPPL.
-
-
Ideker, T.1
Ozier, O.2
Schwikowski, B.3
Siegel, A.F.4
-
2
-
-
0038054341
-
PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
-
Mootha VK, Lindgren CM, Eriksson KF, Subramanian A, Sihag S, Leher J, Puigserver P, Carlsson E, Ridderstrale M, Laurila E, Houstis N, Daly MJ, Patterson N, Mesirov JP, Golub TR, Tamayo P, Spiegelman B, Lander ES, Hirschhorn JN, Altshuler D, Groop LC: PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. Nat Genet 2003;34:267-273.
-
(2003)
Nat Genet
, vol.34
, pp. 267-273
-
-
Mootha, V.K.1
Lindgren, C.M.2
Eriksson, K.F.3
Subramanian, A.4
Sihag, S.5
Leher, J.6
Puigserver, P.7
Carlsson, E.8
Ridderstrale, M.9
Laurila, E.10
Houstis, N.11
Daly, M.J.12
Patterson, N.13
Mesirov, J.P.14
Golub, T.R.15
Tamayo, P.16
Spiegelman, B.17
Lander, E.S.18
Hirschhorn, J.N.19
Altshuler, D.20
Groop, L.C.21
more..
-
3
-
-
0037477855
-
Coordinated reduction of genes of oxidative metabolism in humans with insulin resistance and diabetes: Potential role of PGC1 and NRF1
-
Patti ME, Butte AJ, Crunkhom S, Cusi K, Berria R, Kashyap S, Miyazaki Y, Kohane I, Costello M, Saccone R, Landaker EJ, Goldfine AB, Mun E, DeFronzo R, Finlayson J, Kahn CR, Mandarino LJ: Coordinated reduction of genes of oxidative metabolism in humans with insulin resistance and diabetes: Potential role of PGC1 and NRF1. Proc Natl Acad Sci USA 2003;100:8466-8471.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 8466-8471
-
-
Patti, M.E.1
Butte, A.J.2
Crunkhom, S.3
Cusi, K.4
Berria, R.5
Kashyap, S.6
Miyazaki, Y.7
Kohane, I.8
Costello, M.9
Saccone, R.10
Landaker, E.J.11
Goldfine, A.B.12
Mun, E.13
DeFronzo, R.14
Finlayson, J.15
Kahn, C.R.16
Mandarino, L.J.17
-
5
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
-
Tamayo P, Slonim D, Mesirov J, Zhu Q, Kitareewan S, Dmitrovsky E, Lander ES, Golub TR: Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation. Proc Natl Acad Sci USA 1999;96:2907-2912.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
Lander, E.S.7
Golub, T.R.8
-
6
-
-
0033657261
-
Principal components analysis to summarize microarray experiments: Application to sporulation time series
-
Altman RB, Dunker KA, Hunter L, Lauderdale K, Klein TE, eds. Singapore: World Scientific Publishing Co.
-
Raychaudhuri S, Stuart JM, Altman RB: Principal components analysis to summarize microarray experiments: application to sporulation time series. In: Altman RB, Dunker KA, Hunter L, Lauderdale K, Klein TE, eds. Biocomputing 2000: Proceedings of the Pacific Symposium. Singapore: World Scientific Publishing Co., 2000:455-466.
-
(2000)
Biocomputing 2000: Proceedings of the Pacific Symposium
, pp. 455-466
-
-
Raychaudhuri, S.1
Stuart, J.M.2
Altman, R.B.3
-
7
-
-
0033655775
-
Mutual information relevance networks: Functional genomic clustering using pair-wise entropy measurements
-
Altman RB, Dunker KA, Hunter L, Lauderdale K, Klein TE, eds. Singapore: World Scientific Publishing Co.
-
Butte AJ, Kohane IS: Mutual information relevance networks: Functional genomic clustering using pair-wise entropy measurements. In: Altman RB, Dunker KA, Hunter L, Lauderdale K, Klein TE, eds. Biocomputing 2000: Proceedings of the Pacific Symposium. Singapore: World Scientific Publishing Co., 2000:418-429.
-
(2000)
Biocomputing 2000: Proceedings of the Pacific Symposium
, pp. 418-429
-
-
Butte, A.J.1
Kohane, I.S.2
-
8
-
-
0031616241
-
Reveal, a general reverse engineering algorithm for inference of genetic network architectures
-
Altman RB, Dunker AK, Hunter L, Klein TE, eds. Singapore: World Scientific Publishing Co.
-
Liang S, Fuhrman S, Somogyi R: Reveal, a general reverse engineering algorithm for inference of genetic network architectures. In: Altman RB, Dunker AK, Hunter L, Klein TE, eds. Biocomputing '98: Proceedings of the Pacific Symposium. Singapore: World Scientific Publishing Co., 1998:18-29.
-
(1998)
Biocomputing '98: Proceedings of the Pacific Symposium
, pp. 18-29
-
-
Liang, S.1
Fuhrman, S.2
Somogyi, R.3
-
9
-
-
0033736476
-
Genetic network inference: From co-expression clustering to reverse engineering
-
D'Haeseleer P, Liang S, Somogyi R: Genetic network inference: From co-expression clustering to reverse engineering. Bioinformatics 2000;16:707-726.
-
(2000)
Bioinformatics
, vol.16
, pp. 707-726
-
-
D'Haeseleer, P.1
Liang, S.2
Somogyi, R.3
-
10
-
-
0242490789
-
Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: Insights from an identifiability analysis of an in silico network
-
Zak DE, Gonye GE, Schwaber JS, Doyle FJ 3rd: Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: Insights from an identifiability analysis of an in silico network. Genome Res 2003;13:2396-2405.
-
(2003)
Genome Res
, vol.13
, pp. 2396-2405
-
-
Zak, D.E.1
Gonye, G.E.2
Schwaber, J.S.3
Doyle III, F.J.4
-
11
-
-
18144442687
-
Inferring subnetworks from perturbed expression profiles
-
Pe'er D, Regev A, Elidan G, Friedman N: Inferring subnetworks from perturbed expression profiles. Bioinformatics 2001;17(Suppl 1):S215-S224.
-
(2001)
Bioinformatics
, vol.17
, Issue.1 SUPPL.
-
-
Pe'er, D.1
Regev, A.2
Elidan, G.3
Friedman, N.4
-
12
-
-
10044240790
-
Using prior knowledge to improve genetic network reconstruction from microarray data
-
Le PP, Bahl A, Ungar LH: Using prior knowledge to improve genetic network reconstruction from microarray data. In Silico Biol 2004;4(2):0027.
-
(2004)
In Silico Biol
, vol.4
, Issue.2
, pp. 0027
-
-
Le, P.P.1
Bahl, A.2
Ungar, L.H.3
-
13
-
-
0035221560
-
Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks
-
Altman RB, Dunker KA, Hunter L, Lauderdale K, Klein TE, eds. Singapore: World Scientific Publishing Co.
-
Hartemink AJ, Gifford DK, Jaakkola TS, Young RA: Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks. In: Altman RB, Dunker KA, Hunter L, Lauderdale K, Klein TE, eds. Biocomputing 2001: Proceedings of the Pacific Symposium. Singapore: World Scientific Publishing Co., 2001:422-433.
-
(2001)
Biocomputing 2001: Proceedings of the Pacific Symposium
, pp. 422-433
-
-
Hartemink, A.J.1
Gifford, D.K.2
Jaakkola, T.S.3
Young, R.A.4
-
14
-
-
0035031110
-
Linking microarray data to the literature
-
Masys DR: Linking microarray data to the literature. Nat Genet 2001;28:9-10.
-
(2001)
Nat Genet
, vol.28
, pp. 9-10
-
-
Masys, D.R.1
-
15
-
-
0035042776
-
A literature network of human genes for high-throughput analysis of gene expression
-
Jenssen TK, Laegreid A, Komorowski J, Hovig E: A literature network of human genes for high-throughput analysis of gene expression. Nat Genet 2001;28:21-28.
-
(2001)
Nat Genet
, vol.28
, pp. 21-28
-
-
Jenssen, T.K.1
Laegreid, A.2
Komorowski, J.3
Hovig, E.4
-
16
-
-
12344318183
-
Making the most of it: Pathways reconstruction and integrative simulation using the data at hand
-
Rice J, Stolovitzky G: Making the most of it: Pathways reconstruction and integrative simulation using the data at hand. BIOSILICO 2004;2:70-77.
-
(2004)
BIOSILICO
, vol.2
, pp. 70-77
-
-
Rice, J.1
Stolovitzky, G.2
-
17
-
-
0030305457
-
A language for data analysis and graphics
-
Gentleman RR: A language for data analysis and graphics. J Computat Graph Stat 5:299-314.
-
J Computat Graph Stat
, vol.5
, pp. 299-314
-
-
Gentleman, R.R.1
-
18
-
-
0037336331
-
Open source software for the analysis of microarray data
-
Dudoit S, Gentleman RC, Quackenbush J: Open source software for the analysis of microarray data. Biotechniques 2003;Suppl:45-51.
-
(2003)
Biotechniques
, Issue.SUPPL.
, pp. 45-51
-
-
Dudoit, S.1
Gentleman, R.C.2
Quackenbush, J.3
-
19
-
-
0038810035
-
An autoregulatory loop controls peroxisome proliferator-activated receptor gamma coactivator 1alpha expression in muscle
-
Handschin C, Rhee J, Lin J, Tarr PT, Spiegelman BM: An autoregulatory loop controls peroxisome proliferator-activated receptor gamma coactivator 1alpha expression in muscle. Proc Natl Acad Sci USA 2003;100:7111-7116.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 7111-7116
-
-
Handschin, C.1
Rhee, J.2
Lin, J.3
Tarr, P.T.4
Spiegelman, B.M.5
-
20
-
-
0035844215
-
Calcineurin enhances MAPK phosphatase-1 expression and p38 MAPK inactivation in cardiac myocytes
-
Lim HW, New L, Han J, Molkentin JD: Calcineurin enhances MAPK phosphatase-1 expression and p38 MAPK inactivation in cardiac myocytes. J Biol Chem 2001;276:15913-15919.
-
(2001)
J Biol Chem
, vol.276
, pp. 15913-15919
-
-
Lim, H.W.1
New, L.2
Han, J.3
Molkentin, J.D.4
-
21
-
-
0033779701
-
Calcineurin: Form and function
-
Rusnak F, Mertz P. Calcineurin: Form and function. Physiol Rev 2000;80:1483-1521.
-
(2000)
Physiol Rev
, vol.80
, pp. 1483-1521
-
-
Rusnak, F.1
Mertz, P.2
-
22
-
-
0042164966
-
Down-regulation of cell surface CXCR6 expression during T cell activation is predominantly mediated by calcineurin
-
Koprak S, Matheravidathu S, Springer M, Gould S, Dumont FJ: Down-regulation of cell surface CXCR6 expression during T cell activation is predominantly mediated by calcineurin. Cell Immunol 2003;223:1-12.
-
(2003)
Cell Immunol
, vol.223
, pp. 1-12
-
-
Koprak, S.1
Matheravidathu, S.2
Springer, M.3
Gould, S.4
Dumont, F.J.5
-
23
-
-
1642533461
-
Sensitivity of whole-blood T lymphocytes in individual patients to tacrolimus (FK 506): Impact of interleukin-2 mRNA expression as surrogate measure of immunosuppressive effect
-
Hartel C, Schumacher N, Fricke L, Ebel B, Kirchner H, Muller-Steinhardt M: Sensitivity of whole-blood T lymphocytes in individual patients to tacrolimus (FK 506): Impact of interleukin-2 mRNA expression as surrogate measure of immunosuppressive effect. Clin Chem 2004;50:141-151.
-
(2004)
Clin Chem
, vol.50
, pp. 141-151
-
-
Hartel, C.1
Schumacher, N.2
Fricke, L.3
Ebel, B.4
Kirchner, H.5
Muller-Steinhardt, M.6
-
24
-
-
1942502245
-
New onset diabetes mellitus in patients receiving calcineurin inhibitors: A systematic review and meta-analysis
-
Heisel O, Heisel R, Balshaw R, Keown P: New onset diabetes mellitus in patients receiving calcineurin inhibitors: A systematic review and meta-analysis. Am J Transplant 2004;4:583-595.
-
(2004)
Am J Transplant
, vol.4
, pp. 583-595
-
-
Heisel, O.1
Heisel, R.2
Balshaw, R.3
Keown, P.4
-
25
-
-
0036379686
-
Patient survival after renal transplantation: IV. Impact of post-transplant diabetes
-
Cosio FG, Pesavento TE, Kim S, Osei K, Henry M, Ferguson RM: Patient survival after renal transplantation: IV. Impact of post-transplant diabetes. Kidney Int 2002;62:1440-1446.
-
(2002)
Kidney Int
, vol.62
, pp. 1440-1446
-
-
Cosio, F.G.1
Pesavento, T.E.2
Kim, S.3
Osei, K.4
Henry, M.5
Ferguson, R.M.6
|