Characterisation and expression of the pathway from UDP-glucose to UDP-xylose in differentiating tobacco tissue

Plant Molecular Biology

Volumn 57, Issue 2, 2005, Pages 285-301

  Bindschedler, Laurence V ^a   Wheatley, Edward ^a,c   Gay, Elaine ^a   Cole, Jim ^b   Cottage, Amanda ^b   Bolwell, G Paul ^a  

^a UNIVERSITY OF LONDON   (United Kingdom)

^b Advanced Technologies Cambridge Limited   (United Kingdom)

^c NATIONAL INSTITUTE FOR MEDICAL RESEARCH   (United Kingdom)

Author keywords

Hemicellulose; Tobacco; UDP glucose dehydrogenase; UDP glucuronate decarboxylase; UDP xylose; Xylan; Xylogenesis

Indexed keywords

CLONING; DNA; ENZYME KINETICS; GLUCOSE; OXIDATION; PLANT CELL CULTURE; TISSUE; XYLOSE;

CDNA; DEHYDROGENASE; MRNA; PROTEIN PURIFICATION;

TOBACCO;

CARBOXYLYASE; COMPLEMENTARY DNA; MESSENGER RNA; URIDINE DIPHOSPHATE GLUCOSE; URIDINE DIPHOSPHATE GLUCOSE DEHYDROGENASE; URIDINE DIPHOSPHATE GLUCURONATE DECARBOXYLASE; URIDINE DIPHOSPHATE XYLOSE; VEGETABLE PROTEIN; XYLOSE;

AMINO ACID SEQUENCE; ARTICLE; CELL CULTURE; CELL WALL; CHEMISTRY; COMPARATIVE STUDY; CYTOLOGY; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; TOBACCO; WESTERN BLOTTING;

AMINO ACID SEQUENCE; BLOTTING, NORTHERN; BLOTTING, WESTERN; CARBOXY-LYASES; CELL WALL; CELLS, CULTURED; CLONING, MOLECULAR; DNA, COMPLEMENTARY; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, PLANT; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; RNA, MESSENGER; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; TOBACCO; URIDINE DIPHOSPHATE GLUCOSE; URIDINE DIPHOSPHATE GLUCOSE DEHYDROGENASE; URIDINE DIPHOSPHATE XYLOSE; XYLOSE;

CLONES; ENZYMATIC ACTIVITY; GLUCOSE; NUCLEIC ACIDS; OXIDATION; PLANT TISSUES; TOBACCO; XYLOSE;

ANIMALIA; ESCHERICHIA COLI; NICOTIANA TABACUM;

EID: 17644405273     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-004-7795-7     Document Type: Article

References (51)

1. H. Ankel E. Ankel D.S. Feingold J.S. Schutzbach 1967 Formation of UDP-xylose in algae Biochim. Biophys. Acta 136 72 75
2. A. Anterola N.G. Lewis 2002 Trends in lignin modification: a comprehensive analysis of the effects of genetic manipulations/mutations on lignification and vascular integrity Phytochemistry 61 221 294
3. M.E. Baker R. Blaso 1992 Expansion of the mammalian 3-beta-hydroxysteroid dehydrogenase/plant dehydroflavonol reductase superfamily to include a bacterial UDP-galactose-4-epimerase and open reading frames in vaccinia virus and fish lymphocystis disease virus FEBS Letts. 301 89 93
4. M. Bar-Peled C.L. Griffith T.L. Doering 2001 Functional cloning and characterisation of a UDP glucuronic acid decarboxylase: the pathogenic fungus Cryptococcus neoformanselucidates UDP-xylose synthesis Proc. Natl. Acad. Sci. USA 98 12003 12008
5. C.R. Bellamacina 1996 The nicotinamide dinucleotide binding motif: a comaparison of nucleotide binding proteins FASEB J. 10 1257 1269
6. S. Baud M.N. Vaultier C. Rochat 2004 Structure and expression profile of the sucrose synthase multigene family in Arabidopsis J. Exp. Bot. 55 397 409
7. K.A. Blee E.R. Wheatley V.A. Bonham G.P. Mitchell D. Robertson A.R. Slabas M.M. Burrell P. Wojtaszek G.P. Bolwell 2001 Proteomic analysis reveals a novel set of cell wall proteins in a transformed tobacco cell culture that synthesises secondary walls as determined by biochemical and morphological parameters Planta 212 404 415
8. Bolwell, G.P. 2001. Protein Purification from plant sources. In: (S. Roe (ed.), Protein Purification Applications: A Practical Approach. Oxford University Press, pp. 135-158
9. M. Bucher K.A. Brander S. Sbicego T. Mandel C. Kuhlemeier 1995 Aerobic fermentation in tobacco pollen Plant Mol. Biol. 28 739 750
10. R.E. Campbell S.C. Mosimann I. Vande Rijn M.E. Tanner N.C.J. Strynadka 2000 The first structure of UDP-glucose dehydrogenase reveals the catalytic residues necessary for the two-fold oxidation Biochemistry 39 7012 7023
11. A.J. Carlile L.V. Bindschedler A.M. Bailey P. Bowyer J.M. Clarkson R.M. Cooper 2000 Characterization of SNP1, a cell wall-degrading trypsin, produced during infection by Stagonospora nodorum Mol. Plant-Microbe Interact. 13 538 550
12. P. Chomczynsky N. Sacchi 1987 Single-step method of RNA isolation by acid guanidium thiocyanate-phenol-chloroform extraction Anal. Biochem. 162 156 159
13. H.J. Chung R.J. Ferl 1999 Arabidopsis alcohol dehydrogenase expression in both shoots and roots is conditioned by root growth environment Plant Physiol. 121 429 436
14. G. Dalessandro D.H. Northcote 1977 Changes in enzymic activities of nucleoside diphosphate sugar interconversions during differentiation of cambium to xylem in sycamore and poplar Biochem. J. 162 267 279
15. A. Faik N.J. Price N.V. Raikhel K. Keegstra 2002 An Arabidopsis gene encoding an alpha-xylosyltransferase involved in xyloglucan biosynthesis Proc. Natl. Acad. Sci. USA. 99 7797 7802
16. T.M. Fulton J. Chunwongse S.D. Tanksley 1995 Microprep protocol for extraction of DNA from tomato and other herbaceous plants Plant Mol. Biol. Rep. 13 207 209
17. T. Goujon Z. Minic A. El Amrani O. Lerouxel E. Aletti C. Lapierre 2003 AtBXL1, a novel higher plant (Arabidopsis thaliana) putative beta-xylosidase gene, is involved in secondary cell wall metabolism and plant development Plant J. 33 677 690
18. R. Gregerson M. McLean M. Beld A.G.M. Gerats J. Strommer 1991 Structure, expression, chromosomal location and product of the gene encoding ADH1 in petunia Plant Mol. Biol. 17 37 48
19. A.D. Harper M. Bar-Peled 2002 Biosynthesis of UDP-Xylose. Cloning and characterization of a novel Arabidopsis gene family, UXS, Encoding Soluble and putative membrane-bound UDP-glucuronic acid decarboxylase isoforms Plant Physiol. 130 2188 2198
20. J. Hempel J. Perozich H. Romovacek A. Hinich I. Kuo D.S. Feingold 1994 UDP-glucose dehydrogenase from bovine liver-primary structure and relationships to other dehydrogenases Protein Sci. 3 1074 1080
21. B. Hinterberg C. Klos R. Tenhaken 2002 Recombinant UDP-glucose dehydrogenase from soybean Plant Physiol. Biochem. 40 1011 1017
22. H. Johansson F. Sterky B. Amini J. Lundeberg L.A. Kleczkowski 2002 Molecular cloning and characterization of a cDNA encoding poplar UDP-glucose dehydrogenase, a key gene of hemicellulose/pectin formation Biochim. Biophys. Acta 1576 53 58
23. K.V. John J.S. Schutzbach H. Ankel 1977 Separation and allosteric properties of two forms of UDP-glucuronate carboxy-lyase J. Biol. Chem. 252 8013 8017
24. M. Kobayashi H. Nakagawa I. Suda I. Miyagawa T. Matoh 2002 Purification and cloning of UDP-D-glucuronate carboxy-lyase (UDP-D-xylose synthase) from pea seedlings Plant Cell Physiol. 43 1259 1265
25. K.E. Koch Z. Ying Y. Wu W.T. Avigne 2000 Multiple path of sugar-sensing and a sugar/oxygen overlap for genes of sucrose and ethanol metabolism J. Exp. Bot. 51 417 427
26. H. Kuroyama Y. Tsumuraya 2001 A xylosyltransferase that synthesizes beta-(1->4)-xylans in wheat (Triticum aestivum L.) seedlings Planta 213 231 240
27. 32P]UDPxylose, by UDPglucuronate carboxylyase from wheat germ Eur. J. Biochem. 228 109 112
28. P. Lerouge M. Cabanes-Macheteau C. Rayon A.C. Fischette-Laine V. Gomord L. Faye 1998 N-glycoprotein biosynthesis in plants: recent developments and future trends Plant Mol. Biol. 38 31 48
29. M.W. Loewus F.A. Loewus 1980 The C-5 hydrogen isotope-effect in myo-inositol 1-phosphate synthase as evidence for the myo-inositol oxidation-pathway Carbohydr. Res. 82 333 342
30. D.P. Matton P. Constabel N. Brisson 1990 Alcohol dehydrogenase gene expression in potato following elicitor and stress treatment Plant Mol. Biol. 14 775 783
31. U. Matern H. Grisebach 1977 UDP-apiose/UDP-xylose synthase. Subunit composition and binding studies Eur. J. Biochem. 74 303 312
32. J. Memelink J.H.C. Hoge R.A. Schilperoort 1987 Cytokinin stress changes the developmental regulation of several defence-related genes in tobacco EMBO J. 6 3579 3583
33. J.L. Moriarity K.J. Hurt A.C. Resnick P.B. Storm W. Laroy R.L. Schnaar S.H. Snyder 2002 UDP-glucuronate decarboxylase, a key enzyme in proteoglycan synthesis J. Biol. Chem. 277 16968 16975
34. Reim, D.F. and Speicher, D.W. 1997. Chemical analysis. In: J.E. Coligan, B.M. Dunn, H.L. Ploegh, D.W. Speicher and P.T. Wingfield, (Eds.), Current Protocols in Protein sciences. John Wiley and Sons, Inc. USA, Chapter 11.
35. W.D. Reiter G.F. Vanzin 2001 Molecular genetics of nucleotide sugar interconversion pathways in plants Plant Mol. Biol. 47 95 113
36. D. Robertson I. Beech G.P. Bolwell 1995 Regulation of the enzymes of UDP-sugar metabolism during differentiation of French bean Phytochemistry 39 21 28
37. D. Robertson B.A. McCormack G.P. Bolwell 1995 Cell wall polysaccharide biosynthesis and related metabolismin elicitor-stressed cells of French bean (Phaseolus vulgaris L.) Biochem. J. 306 745 750
38. D. Robertson C. Smith G.P. Bolwell 1996 Inducible UDP-glucose dehydrogenase from French bean (Phaseolus vulgaris L.) locates to vascular tissue and has alcohol dehydrogenase activity Biochem. J. 313 311 317
39. M.W. Rodgers G.P. Bolwell 1992 Partial purification of Golgi-bound arabinosyl transferase and two isoforms of xylosyl transferase from French Bean (Phaseolus vulgaris L.) Biochem. J. 288 817 822
40. G.J. Seifert 2004 Nucleotide sugar interconversions and cell wall biosynthesis: how to bring the inside to the outside Curr. Opp. Plant Biol. 7 277 284
41. B. Seitz C. Klos M. Wurm R. Tenhaken 2000 Matrix polysaccharide precursors in Arabidopsis cell walls are synthesized by alternate pathways with organ-specific expression patterns Plant J. 21 537 546
42. W.J. Simon J.J. Hall I. Suzuki N. Murata A.R. Slabas 2002 Proteomic study of the soluble proteins of the unicellular cyanobacterium Synechocytis sp PCC6803 using automated matrix automated matrix-assisted laser desorption/ionization-time of flight peptide mass fingerprinting Proteomics 2 1735 1742
43. J. Speirs E. Lee K. Holt K. Yong-Duk N. Steele Scott B. Loveys W. Schuch 1998 Genetic manipulation of alcohol dehydrogenase levels in ripening tomato fruit affects the balance of some flavor aldehydes and alcohols Plant Physiol 117 1047 1058
44. D.C. Stewart L. Copeland 1998 Uridine 5′-diphosphate-glucose dehydrogenase from soybean nodules Plant Physiol. 116 349 355
45. D.C. Stewart L. Copeland 1999 Kinetic properties of UDP-glucose dehydrogenase from soybean nodules Plant Sci. 147 119 125
46. 2 stress on tomato alcohol dehydrogenase activity - description of a second ADH coding gene Biochem. Genet. 19 397 409
47. R. Tenhaken O. Thulke 1996 Cloning of an enzyme that synthesises a key nucleotide sugar precursor of hemicellulose biosynthesis from soybean: UDP-glucose dehydrogenase Plant Physiol. 112 1127 1134
48. W. Turner F.C. Botha 2002 Purification and kinetic properties of UDP-glucose dehydrogenase from sugarcane Arch. Biochem. Biophys. 407 209 216
49. Wheatley. E.R. (2001). UDP-D-glucuronate decarboxylase: purification and immunocytochemical analysis. PhD Dissertation. London University
50. E.R. Wheatley D.R. Davies G.P. Bolwell 2002 Characterisation and immunolocation of an 87 kDa polypeptide associated with UDP-glucuronic acid decarboxylase activity from differentiating tobacco cells (Nicotiana tabacum L.) Phytochemistry 61 771 780
51. R.K. Wierenga P. Terpstra W.G.J. Hol 1986 Prediction of the occurrence of the ADP-binding beta alpha beta fold in proteins, using an amino acid sequence fingerprint J. Mol. Biol. 187 101 107