LeuO protein delimits the transcriptionally active and repressive domains on the bacterial chromosome

Journal of Biological Chemistry

Volumn 280, Issue 15, 2005, Pages 15111-15121

  Chen, Chien Chung ^a   Wu, Hai Young ^a  

^a WAYNE STATE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; BINDING ENERGY; BOUNDARY ELEMENT METHOD; CHROMOSOMES; DNA; GENES;

BACTERIAL GENE SILENCERS; BLOCKING SYNERGY; NUCLEOPROTEIN FILAMENTS; TRANSCRIPTIONALLY ACTIVE;

PROTEINS;

BACTERIAL PROTEIN; DNA; PROTEIN; PROTEIN LACI; PROTEIN LEUO; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL CHROMOSOME; BINDING SITE; CHROMOSOME ANALYSIS; CIS ISOMER; CONTROLLED STUDY; EUKARYOTE; GENE; GENE CLUSTER; GENE SILENCING; GENE TARGETING; HETEROCHROMATIN; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DNA BINDING; PROTEIN FUNCTION; TRANSCRIPTION INITIATION;

BINDING SITES; CHROMOSOMES, BACTERIAL; DEOXYRIBONUCLEASE I; DNA; DNA PRIMERS; ESCHERICHIA COLI PROTEINS; GENE SILENCING; MODELS, BIOLOGICAL; MODELS, GENETIC; MULTIGENE FAMILY; NUCLEOPROTEINS; PLASMIDS; PROMOTER REGIONS (GENETICS); PROTEIN STRUCTURE, TERTIARY; SALMONELLA TYPHIMURIUM; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

BACTERIA (MICROORGANISMS); EUKARYOTA;

EID: 17644392863     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M414544200     Document Type: Article

References (70)

1. Hendrich, B. D., and Willard, H. F. (1995) Hum. Mol. Genet. 4, 1765-1777
2. Festenstein, R., and Kioussis, D. (2000) Curr. Opin. Genet. Dev. 10, 199-203
3. Yarmolinsky, M. (2000) Curr. Opin. Microbiol. 3, 138-143
4. Schnetz, K. (1995) EMBO J. 14, 2545-2550
5. Schnetz, K., and Wang, J. C. (1996) Nucleic Acids Res. 24, 2422-2428
6. Mukerji, M., and Mahadevan, S. (1997) Mol. Microbiol. 24, 617-627
7. Ueguchi, C., and Mizuno, T. (1993) EMBO J. 12, 1039-1046
8. Jordi, B. J., Fielder, A. E., Burns, C. M., Hinton, J. C., Dover, N., Ussery, D. W., and Higgins, C. F. (1997) J. Biol. Chem. 272, 12083-12090
9. Jordi, B. J., and Higgins, C. F. (2000) J. Biol. Chem. 275, 12123-12128
10. Dorman, C. J. (2004) Nat. Rev. Microbiol. 2, 391-400
11. Rimsky, S. (2004) Curr. Opin. Microbiol. 7, 109-114
12. Chen, C.-C., Chou, M. Y., Huang, C. H., Majumder, A., and Wu, H.-Y. (2005) J. Biol. Chem. 280, 5101-5112
13. Kim, S. K., and Wang, J. C. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 8557-8561
14. Hao, J. J., and Yarmolinsky, M. (2002) J. Bacteriol. 184, 4857-4867
15. Rodionov, O., Lobocka, M., and Yarmolinsky, M. (1999) Science 283, 546-549
16. Lynch, A. S., and Wang, J. C. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 1896-1900
17. Hanai, R., Liu, R., Benedetti, P., Caron, P. R., Lynch, A. S., and Wang, J. C. (1996) J. Biol. Chem. 271, 17469-17475
18. Murphy, T. D., and Karpen, G. H. (1998) Cell 93, 317-320
19. Perrod, S., and Gasser, S. M. (2003) CMLS Cell. Mol. Life Sci. 60, 2303-2318
20. Tham, W. H., and Zakian, V. A. (2002) Oncogene 21, 512-521
21. Zhimulev, I. F., and Beliaeva, E. S. (2003) Genetika 39, 187-201
22. Kamakaka, R. T. (2003) Curr. Biol. 13, R317-R319
23. Bi, X., Braunstein, M., Shei, G. J., and Broach, J. R. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 11934-11939
24. Fourel, G., Revardel, E., Koering, C. E., and Gilson, E. (1999) EMBO J. 18, 2522-2537
25. Bell, A. C., West, A. G., and Felsenfeld, G. (2001) Science 291, 447-450
26. Donze, D., and Kamakaka, R. T. (2002) BioEssays 24, 344-349
27. Pryde, F. E., and Louis, E. J. (1999) EMBO J. 18, 2538-2550
28. Bell, A. C., and Felsenfeld, G. (1999) Curr. Opin. Genet. Dev. 9, 191-198
29. Oki, M., and Kamakaka, R. T. (2002) Curr. Opin. Cell Biol. 14, 299-304
30. Haber, J. E. (1998) Annu. Rev. Genet. 32, 561-599
31. Kamakaka, R. T. (2002) Curr. Biol. 12, R535-R537
32. Donze, D., and Kamakaka, R. T. (2001) EMBO J. 20, 520-531
33. Chen, C.-C., Ghole, M., Majumder, A., Wang, Z., Chandana, S., and Wu, H.-Y. (2003) J. Biol. Chem. 278, 38094-38103
34. Chen, C.-C., Fang, M., Majumder, A., and Wu, H.-Y. (2001) J. Biol. Chem. 276, 9478-9485
35. Fang, M., and Wu, H.-Y. (1998) J. Bacteriol. 180, 626-633
36. Casadaban, M. J., and Cohen, S. N. (1980) J. Mol. Biol. 138, 179-207
37. Oehler, S., Eismann, E. R., Kramer, H., and Muller-Hill, B. (1990) EMBO J. 9, 973-979
38. Lehming, N., Sartorius, J., Niemoller, M., Genenger, G., von Wilcken-Bergmann, B., and Muller-Hill, B. (1987) EMBO J. 6, 3145-3153
39. Wu, H.-Y., Tan, J., and Fang, M. (1995) Cell 82, 445-451
40. Kania, J., and Brown, D. T. (1976) Proc. Natl. Acad. Sci. U. S. A. 73, 3529-3533
41. Besse, M., von Wilcken-Bergmann, B., and Muller-Hill, B. (1986) EMBO J. 5, 1377-1381
42. Kramer, H., Niemoller, M., Amouyal, M., Revet, B., von Wilcken-Bergmann, B., and Muller-Hill, B. (1987) EMBO J. 6, 1481-1491
43. Caramel, A., and Schnetz, K. (1998) J. Mol. Biol. 284, 875-883
44. Chen, J., Alberti, S., and Matthews, K. S. (1994) J. Biol. Chem. 269, 12482-12487
45. Chen, J., Surendran, R., Lee, J. C., and Matthews, K. S. (1994) Biochemistry 33, 1234-1241
46. Harmer, T., Wu, M., and Schleif, R. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 427-431
47. Wang, Q., Sacco, M., Ricca, E., Lago, C. T., De Felice, M., and Calvo, J. M. (1993) Mol. Microbiol. 7, 883-891
48. Wu, H.-Y., and Fang, M. (2003) Prog. Nucleic Acid Res. Mol. Biol. 73, 43-68
49. Capelson, M., and Corces, V. G. (2004) Biol. Cell 96, 617-629
50. Oki, M., Valenzuela, L., Chiba, T., Ito, T., and Kamakaka, R. T. (2004) Mol. Cell. Biol. 24, 1956-1967
51. Ishii, K., and Laemmli, U. K. (2003) Mol. Cell 11, 237-248
52. Ishii, K., Arib, G., Lin, C., Van Houwe, G., and Laemmli, U. K. (2002) Cell 109, 551-562
53. West, A. G., Gaszner, M., and Felsenfeld, G. (2002) Genes Dev. 16, 271-288
54. Blanton, J., Gaszner, M., and Schedl, P. (2003) Genes Dev. 17, 664-675
55. Crothers, D. M., Drak, J., Kahn, J. D., and Levene, S. D. (1992) Methods Enzymol. 212, 3-29
56. Kahn, J. D., and Crothers, D. M. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 6343-6347
57. Liu, L. F., and Wang, J. C. (1978) Proc. Natl. Acad. Sci. U. S. A. 75, 2098-2102
58. Borowiec, J. A., Zhang, L., Sasse-Dwight, S., and Gralla, J. D. (1987) J. Mol. Biol. 196, 101-111
59. Kramer, H., Amouyal, M., Nordheim, A., and Muller-Hill, B. (1988) EMBO J. 7, 547-556
60. Kahn, J. D., Yun, E., and Crothers, D. M. (1994) Nature 368, 163-166
61. Fernandez-Mora, M., Puente, J. L., and Calva, E. (2004) J. Bacteriol. 186, 2909-2920
62. Klauck, E., Bohringer, J., and Hengge-Aronis, R. (1997) Mol. Microbiol. 25, 559-569
63. Ueguchi, C., Ohta, T., Seto, C., Suzuki, T., and Mizuno, T. (1998) J. Bacteriol. 180, 190-193
64. Shi, X., and Bennett, G. N. (1995) J. Bacteriol. 177, 810-814
65. Repoila, F., and Gottesman, S. (2001) J. Bacteriol. 183, 4012-4023
66. Chen, C.-C., and Wu, H.-Y. (2003) Front. Biosci. 8, d430-d439
67. Gerasimova, T. I., and Corces, V. G. (1998) Cell 92, 511-521
68. Gerasimova, T. I., Byrd, K., and Corces, V. G. (2000) Mol. Cell 6, 1025-1035
69. Chen, S., and Corces, V. G. (2001) Genetics 159, 1649-1658
70. Fang, M., and Wu, H.-Y. (1998) J. Biol. Chem. 273, 29929-29934