Molecular evidence for the existence of natural hybrids in the genus Zygosaccharomyces

FEMS Yeast Research

Volumn 5, Issue 8, 2005, Pages 747-755

  James, Stephen A ^a   Bond, Christopher J ^a   Stratford, Malcolm ^b   Roberts, Ian N ^a  

^a INSTITUTE OF FOOD RESEARCH   (United Kingdom)

^b UNILEVER RESEARCH   (United Kingdom)

Author keywords

Biodiversity; Evolution; Phylogeny; Zygosaccharomyces

Indexed keywords

ACCURACY; ALLELE; ARTICLE; CONTROLLED STUDY; CROSS LINKING; DNA HYBRIDIZATION; FUNGAL GENE; FUNGAL STRAIN; FUNGUS CULTURE; GENE FREQUENCY; GENE SEQUENCE; GENETIC CODE; GENOME ANALYSIS; MOLECULAR BIOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; SEQUENCE ANALYSIS; TAXONOMY; TECHNIQUE; ZYGOSACCHAROMYCES ROUXII;

EID: 17644372311     PISSN: 15671356     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsyr.2005.02.004     Document Type: Article

References (50)

1. S.A. James, and M. Stratford Spoilage yeasts with emphasis on the genus Zygosaccharomyces T. Boekhout V. Robert Yeasts in Food, Beneficial and Detrimental Aspects 2003 Behr's Verlag Hamburg 171 187
2. J.I. Pitt, and A.D. Hocking Fungi and Food Spoilage second ed. 1997 Blackie Academic and Professional London
3. D.S. Thomas, and R.R. Davenport Zygosaccharomyces bailii - a profile of characteristics and spoilage activities Food Microbiol. 2 1985 157 169
4. J.A. Barnett, R.W. Payne, and D. Yarrow Yeasts: Characteristics and Identification third ed. 2000 Cambridge University Press Cambridge
5. C.P. Kurtzman DNA relatedness among species of the genus Zygosaccharomyces Yeast 6 1990 213 219
6. C.P. Kurtzman Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of the new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and Zygotorulaspora FEMS Yeast Res. 4 2003 233 245
7. D. Yarrow Methods for the isolation, maintenance and identification of yeasts C.P. Kurtzman J.W. Fell The Yeasts: A Taxonomic Study fourth ed. 1998 Elsevier Amsterdam 77 100
8. C.P. Kurtzman Zygosaccharomyces Barker C.P. Kurtzman J.W. Fell The Yeasts: A Taxonomic Study fourth ed. 1998 Elsevier Amsterdam 424 432
9. J.W. Fell, T. Boekhout, A. Fonseca, G. Scorzetti, and A. Statzell-Tallman Biodiversity and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis Int. J. Syst. Evol. Microbiol. 50 2000 1351 1371
10. C.P. Kurtzman, and C.J. Robnett Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large-subunit (26S) ribosomal DNA partial sequences Antonie van Leeuwenhoek 73 1998 331 371
11. S.A. James, M.D. Collins, and I.N. Roberts Genetic interrelationship among species of the genus Zygosaccharomyces as revealed by small-subunit rRNA gene sequences Yeast 10 1994 871 881
12. S.A. James, M.D. Collins, and I.N. Roberts Use of an rRNA internal transcribed spacer region to distinguish phylogenetically closely related species of the genera Zygosaccharomyces and Torulaspora Int. J. Syst. Evol. Microbiol. 46 1996 189 194
13. C.P. Kurtzman, C.J. Robnett, and E. Basehoar-Powers Zygosaccharomyces kombuchaensis, a new ascosporogenous yeast from 'kombucha tea' FEMS Yeast Res. 1 2001 133 138
14. H. Steels, C.J. Bond, M.D. Collins, I.N. Roberts, M. Stratford, and S.A. James Zygosaccharomyces lentus sp. nov., a new member of the yeast genus Zygosaccharomyces Barker Int. J. Syst. Bacteriol. 49 1999 319 327
15. S.A. James, J. Cai, I.N. Roberts, and M.D. Collins A phylogenetic analysis of the genus Saccharomyces based on 18S rRNA gene sequences: description of Saccharomyces kunashirensis sp. nov. and Saccharomyces martiniae sp. nov Int. J. Syst. Bacteriol. 47 1997 453 460
16. C.P. Kurtzman, and C.J. Robnett Phylogenetic relationships among yeasts of the 'Saccharomyces complex' determined from multigene sequence analyses FEMS Yeast Res. 3 2003 417 432
17. P. Alifano, R. Fani, P. Lio, A. Lazcano, M. Bazzicalupo, M. Carlomagno, and C. Bruni Histidine biosynthetic pathway and genes: structure, regulation and evolution Microbiol. Rev. 60 1996 44 69
18. +-antiporter gene closely related to the salt-tolerance of yeast Zygosaccharomyces rouxii Yeast 11 1995 829 838
19. K. O'Donnell Fusarium and its near relatives D.R. Reynolds J.W. Taylor The Fungal Holomorph: Mitotic, Meiotic and Pleomorphic Speciation in Fungal Systematics 1993 CAB International Wallingford 225 233
20. T.D. Fox Five TGA 'stop' codons occur within the translated sequence of the yeast mitochondrial gene for cytochrome c oxidase subunit II Proc. Natl. Acad. Sci. USA 76 1979 6534 6538
21. C. Belloch, A. Querol, M.D. Garcia, and E. Barrio Phylogeny of the genus Kluyveromyces inferred from the mitochondrial cytochrome-c oxidase II gene Int. J. Syst. Evol. Microbiol. 50 2000 405 416
22. H. Sychrová, V. Braun, and J.-L. Souciet Sequence and organization analyses of a Zygosaccharomyces rouxii DNA fragment containing the HIS3 gene Yeast 16 2000 581 587
23. O. Kinclová, S. Potier, and H. Sychrová The Zygosaccharomyces rouxii strain CBS 732 contains only one copy of the HOG1 and SOD2 genes J. Biotechnol. 88 2001 151 158
24. + antiporter from salt-tolerant yeast Zygosaccharomyces rouxii and functional expression of ZSOD2 and ZSOD22 in Saccharomyces cerevisiae Yeast 14 1998 1167 1174
25. J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
26. N. Saitou, and M. Nei The neighbour-joining method: a new method for reconstructing phylogenetic trees Mol. Biol. Evol. 4 1987 406 425
27. H. Sychrová, V. Braun, and J.-L. Souciet Molecular cloning and sequence analysis of Zygosaccharomyces rouxii ADE2 gene encoding a phosphoribosyl-aminoimidazole carboxylase Yeast 15 1999 1399 1402
28. N.J.W. Kreger-van Rij Kluyveromyces osmophilus, a new yeast species Mycopath. Mycol. Appl. 29 1966 137 141
29. J.P. van der Walt Saccharomyces Meyen emend. Reess J. Lodder The Yeasts: A Taxonomic Study second ed. 1970 North-Holland Amsterdam 555 718
30. D. Yarrow Zygosaccharomyces Barker N.J.W. Kreger-van Rij The Yeasts: A Taxonomic Study third ed. 1984 Elsevier Amsterdam 449 465
31. M.A. Lachance, H.M. Daniel, W. Meyer, G.S. Prasad, S.P. Gautam, and K. Boundy-Mills The D1/D2 domain of the large-subunit rDNA of the yeast species Clavispora lusitaniae is unusually polymorphic FEMS Yeast Res. 4 2003 253 258
32. C. Groth, J. Hansen, and J. Piškur A natural chimeric yeast containing genetic material from three species Int. J. Syst. Bacteriol. 49 1999 1933 1938
33. G. Marinoni, and M.-A. Lachance Speciation in the large-spored Metschnikowia clade and establishment of a new species, Metschnikowia borealis comb. nov FEMS Yeast Res. 4 2004 587 596
34. H. Sychrová, V. Braun, S. Potier, and J.-L. Souciet Organization of specific genomic regions of Zygosaccharomyces rouxii and Pichia sorbitophila: comparison with Saccharomyces cerevisiae Yeast 16 2000 1377 1385
35. C. Børsting, R. Hummel, E.R. Schultz, T.M. Rose, M.B. Pedersen, J. Knudsen, and K. Kristiansen Saccharomyces carlsbergensis contains two functional genes encoding the Acyl-Co A-binding protein, one similar to the ACB1 gene from S. cerevisiae and one identical to the ACB1 gene from S. monacensis Yeast 13 1997 1409 1421
36. J. Hansen, and M.C. Kielland-Brandt Saccharomyces carlsbergensis contains two functional MET2 alleles similar to homologues from S. cerevisiae and S. monacensis Gene 140 1994 33 40
37. A. Vaughan-Martini, and C.P. Kurtzman Deoxyribonucleic acid relatedness among species of the genus Saccharomyces sensu stricto Int. J. Syst. Bacteriol. 35 1985 508 511
38. A. Vaughan-Martini, and A. Martini Saccharomyces Meyen ex Reess C.P. Kurtzman J.W. Fell The Yeasts: A Taxonomic Study fourth ed. 1998 Elsevier Amsterdam 358 371
39. M.B. Pedersen DNA sequence polymorphisms in the genus Saccharomyces. I. Comparison of the HIS4 and ribosomal RNA genes in lager strains, ale strains and various species Carlsberg Res. Commun. 48 1983 485 503
40. M.B. Pedersen DNA sequence polymorphisms in the genus Saccharomyces. III. Restriction endonuclease fragment patterns of chromosomal regions in brewing and other yeast strains Carlsberg Res. Commun. 51 1986 163 183
41. S. Casaregola, H.-V. Nguyen, G. Lapathitis, A. Kotyk, and C. Gaillardin Analysis of the constitution of the beer yeast genome by PCR, sequencing and subtelomeric sequence hybridization Int. J. Syst. Evol. Microbiol. 51 2001 1607 1618
42. M. de Barros Lopes, J.R. Bellon, N.J. Shirley, and P.F. Ganter Evidence for multiple interspecific hybridization in Saccharomyces sensu stricto species FEMS Yeast Res. 1 2002 323 331
43. R. Joubert, P. Brignon, C. Lehmann, C. Monribot, F. Gendre, and H. Boucherie Two-dimensional gel analysis of the proteome of lager brewing yeasts Yeast 16 2000 511 522
44. H.-V. Nguyen, A. Lepingle, and C. Gaillardin Molecular typing demonstrates homogeneity of Saccharomyces uvarum strains and reveals the existence of hybrids between S. uvarum and S. cerevisiae, including the S. bayanus type strain CBS 380 Syst. Appl. Microbiol. 23 2000 71 85
45. A. Pulvirenti, H.-V. Nguyen, C. Caggia, P. Giudici, S. Rainieri, and C. Zambonelli Saccharomyces uvarum, a proper species within Saccharomyces sensu stricto FEMS Microbiol. Lett. 192 2000 191 196
46. S. Rainieri, C. Zambonelli, J.E. Hallsworth, A. Pulvirenti, and P. Giudici Saccharomyces uvarum, a distinct group within Saccharomyces sensu stricto FEMS Microbiol. Lett. 177 1999 177 185
47. I. Masneuf, J. Hansen, C. Groth, J. Piškur, and D. Dubourdieu New hybrids between Saccharomyces sensu stricto yeast species found among wine and cider production strains Appl. Environ. Microbiol. 64 1998 3887 3892
48. R.E. Fundyga, R.J. Kuykendall, W. Lee-Yang, and T.J. Lott Evidence for aneuploidy and recombination in the human commensal yeast Candida parapsilosis Infect. Genet. Evol. 4 2004 37 43
49. T. Boekhout, B. Theelen, M. Diaz, J.W. Fell, W.C.J. Hop, E.C.A. Abeln, F. Dromer, and W. Meyer Hybrid genotypes in the pathogenic yeast Cryptococcus neoformans Microbiology 147 2001 891 907
50. S.A. James, M.D. Collins, and I.N. Roberts Phylogenetic analysis of the psychrophobic yeast Arxiozyma telluris and the reinstatement of Candida pintolopesii (van Uden) Meyer et Yarrow and Candida slooffii van Uden et do Carmo Sousa Int. J. Syst. Evol. Microbiol. 51 2001 1917 1925