메뉴 건너뛰기




Volumn 21, Issue 8, 2005, Pages 1393-1400

LongSAGE analysis significantly improves genome annotation: Identifications of novel genes and alternative transcripts in the mouse

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; CYTOSINE; GUANINE; NUCLEOTIDE; THYMINE; TRANSCRIPTOME;

EID: 17444416148     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti207     Document Type: Article
Times cited : (27)

References (35)
  • 1
    • 3042641339 scopus 로고    scopus 로고
    • Correction of sequence-based artifacts in serial analysis of gene expression
    • Akmaev,V.R. and Wang,C.J. (2004) Correction of sequence-based artifacts in serial analysis of gene expression. Bioinformatics, 20, 1254-1263.
    • (2004) Bioinformatics , vol.20 , pp. 1254-1263
    • Akmaev, V.R.1    Wang, C.J.2
  • 2
    • 0037350957 scopus 로고    scopus 로고
    • SLAM: Cross-species gene finding and alignment with a generalized pair hidden Markov model
    • Alexandersson,M., Cawley,S. and Pachter,L. (2003) SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model. Genome Res., 13, 496-502.
    • (2003) Genome Res. , vol.13 , pp. 496-502
    • Alexandersson, M.1    Cawley, S.2    Pachter, L.3
  • 4
    • 0034834248 scopus 로고    scopus 로고
    • Identification of alternate polyadenylation sites and analysis of their tissue distribution using EST data
    • Beaudoing,E. and Gautheret,D. (2001) Identification of alternate polyadenylation sites and analysis of their tissue distribution using EST data. Genome Res., 11, 1520-1526.
    • (2001) Genome Res. , vol.11 , pp. 1520-1526
    • Beaudoing, E.1    Gautheret, D.2
  • 9
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • Burge,C. and Karlin,S. (1997) Prediction of complete gene structures in human genomic DNA. J. Mol. Biol., 268, 78-94.
    • (1997) J. Mol. Biol. , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 11
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing,B., Hillier,L., Wendl,M.C. and Green,P. (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res., 8, 175-185.
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 13
    • 0037370478 scopus 로고    scopus 로고
    • Bioinformatics in the post-sequence era
    • Kanehisa,M. and Bork,P. (2003) Bioinformatics in the post-sequence era. Nat. Genet., 33(suppl.), 305-310.
    • (2003) Nat. Genet. , vol.33 , Issue.SUPPL. , pp. 305-310
    • Kanehisa, M.1    Bork, P.2
  • 14
    • 0037079054 scopus 로고    scopus 로고
    • Computational systems biology
    • Kitano,H. (2002) Computational systems biology. Nature, 420, 206-210.
    • (2002) Nature , vol.420 , pp. 206-210
    • Kitano, H.1
  • 15
    • 0042968976 scopus 로고    scopus 로고
    • The power of the 3′ UTR: Translational control and development
    • Kuersten,S. and Goodwin,E.B. (2003) The power of the 3′ UTR: translational control and development. Nat. Rev. Genet., 4 626-637.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 626-637
    • Kuersten, S.1    Goodwin, E.B.2
  • 18
    • 0034761768 scopus 로고    scopus 로고
    • A comparative molecular analysis of developing mouse forelimbs and hindlimbs using serial analysis of gene expression (SAGE)
    • Margulies,E.H., Kardia,S.L. and Innis,J.W. (2001) A comparative molecular analysis of developing mouse forelimbs and hindlimbs using serial analysis of gene expression (SAGE). Genome Res. 11, 1686-1698.
    • (2001) Genome Res. , vol.11 , pp. 1686-1698
    • Margulies, E.H.1    Kardia, S.L.2    Innis, J.W.3
  • 21
    • 0141789672 scopus 로고    scopus 로고
    • RNA binding protein sex-lethal (Sxl) and control of Drosophila sex determination and dosage compensation
    • Penalva,L.O. and Sanchez,L. (2003) RNA binding protein sex-lethal (Sxl) and control of Drosophila sex determination and dosage compensation. Microbiol. Mol. Biol. Rev., 67, 343-359.
    • (2003) Microbiol. Mol. Biol. Rev. , vol.67 , pp. 343-359
    • Penalva, L.O.1    Sanchez, L.2
  • 22
    • 0037803473 scopus 로고    scopus 로고
    • Assessment of SAGE in transcript identification
    • Pleasance,E.D., Marra,M.A. and Jones,S.J. (2003) Assessment of SAGE in transcript identification. Genome Res., 13, 1203-1215.
    • (2003) Genome Res. , vol.13 , pp. 1203-1215
    • Pleasance, E.D.1    Marra, M.A.2    Jones, S.J.3
  • 23
    • 0035002807 scopus 로고    scopus 로고
    • Evaluation of gene-finding programs on mammalian sequences
    • Rogic,S., Mackworth,A.K. and Ouellette,F.B. (2001) Evaluation of gene-finding programs on mammalian sequences. Genome Res., 11 817-832.
    • (2001) Genome Res. , vol.11 , pp. 817-832
    • Rogic, S.1    Mackworth, A.K.2    Ouellette, F.B.3
  • 27
    • 0035408587 scopus 로고    scopus 로고
    • Genome annotation: From sequence to biology
    • Stein,L. (2001) Genome annotation: from sequence to biology. Nat. Rev. Genet., 2, 493-503.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 493-503
    • Stein, L.1
  • 28
    • 2442679088 scopus 로고    scopus 로고
    • SAGE is far more sensitive than EST for detecting low-abundance transcripts
    • Sun,M., Zhou,G., Lee,S., Chen,J., Shi,R.Z. and Wang,S.M. (2004) SAGE is far more sensitive than EST for detecting low-abundance transcripts. BMC Genomics, 5, 1.
    • (2004) BMC Genomics , vol.5 , pp. 1
    • Sun, M.1    Zhou, G.2    Lee, S.3    Chen, J.4    Shi, R.Z.5    Wang, S.M.6
  • 30
    • 17444377577 scopus 로고    scopus 로고
    • LongSAGE analysis revealed the presence of a large number of novel antisense genes in the mouse genome
    • Wahl,M., Heinzmann,U. and Imai,K. (2005) LongSAGE analysis revealed the presence of a large number of novel antisense genes in the mouse genome. Bioinformatics, 21, 1391-1394.
    • (2005) Bioinformatics , vol.21 , pp. 1391-1394
    • Wahl, M.1    Heinzmann, U.2    Imai, K.3
  • 31
    • 0344688180 scopus 로고    scopus 로고
    • Transcriptome analysis of early chondrogenesis in ATDC5 cells induced by bone morphogenetic protein 4
    • Wahl,M., Shukunami,C., Heinzmann,U., Hamajima,K., Hiraki,Y. and Imai,K. (2004) Transcriptome analysis of early chondrogenesis in ATDC5 cells induced by bone morphogenetic protein 4. Genomics, 83, 45-58.
    • (2004) Genomics , vol.83 , pp. 45-58
    • Wahl, M.1    Shukunami, C.2    Heinzmann, U.3    Hamajima, K.4    Hiraki, Y.5    Imai, K.6
  • 34
    • 0038349624 scopus 로고    scopus 로고
    • Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome
    • Zavolan,M., Kondo,S., Schonbach,C., Adachi,J., Hume,D.A., Hayashizaki,Y. and Gaasterland,T. (2003) Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome. Genome Res., 13 1290-1300.
    • (2003) Genome Res. , vol.13 , pp. 1290-1300
    • Zavolan, M.1    Kondo, S.2    Schonbach, C.3    Adachi, J.4    Hume, D.A.5    Hayashizaki, Y.6    Gaasterland, T.7
  • 35
    • 0036733640 scopus 로고    scopus 로고
    • Computational prediction of eukaryotic protein-coding genes
    • Zhang,M.Q. (2002) Computational prediction of eukaryotic protein-coding genes. Nat. Rev. Genet., 3, 698-709.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 698-709
    • Zhang, M.Q.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.