-
1
-
-
0033401933
-
Lateral genomics
-
PID: 10611671, COI: 1:CAS:528:DC%2BD3cXnt1Cnuw%3D%3D
-
Doolittle WF: Lateral genomics. Trends Cell Biol. 1999, 9: M5-M8. 10.1016/S0962-8924(99)01664-5. DOI: 10.1016/S0962-8924(99)01664-5
-
(1999)
Trends Cell Biol
, vol.9
, pp. M5-M8
-
-
Doolittle, W.F.1
-
2
-
-
0033603539
-
Phylogenetic classification and the universal tree
-
PID: 10381871, COI: 1:CAS:528:DyaK1MXkt1Kgsbs%3D
-
Doolittle WF: Phylogenetic classification and the universal tree. Science. 1999, 284: 2124-2129. 10.1126/science.284.5423.2124. DOI: 10.1126/science.284.5423.2124
-
(1999)
Science
, vol.284
, pp. 2124-2129
-
-
Doolittle, W.F.1
-
3
-
-
0030868589
-
Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea
-
PID: 9379893, COI: 1:CAS:528:DyaK2sXmtFegsbk%3D
-
Koonin EV, Mushegian AR, Galperin MY, Walker DR: Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea. Mol Microbiol. 1997, 25: 619-637. 10.1046/j.1365-2958.1997.4821861.x. DOI: 10.1046/j.1365-2958.1997.4821861.x
-
(1997)
Mol Microbiol
, vol.25
, pp. 619-637
-
-
Koonin, E.V.1
Mushegian, A.R.2
Galperin, M.Y.3
Walker, D.R.4
-
4
-
-
0034682335
-
Lateral gene transfer and the nature of bacterial innovation
-
PID: 10830951, COI: 1:CAS:528:DC%2BD3cXjs1Kmu7w%3D
-
Ochman H, Lawrence JG, Groisman EA: Lateral gene transfer and the nature of bacterial innovation. Nature. 2000, 405: 299-304. 10.1002/(SICI)1096-9861(19990315)405:3<299::AID-CNE2>3.0.CO;2-6. DOI: 10.1038/35012500
-
(2000)
Nature
, vol.405
, pp. 299-304
-
-
Ochman, H.1
Lawrence, J.G.2
Groisman, E.A.3
-
5
-
-
0032762209
-
Evolution of organellar genomes
-
PID: 10607615, COI: 1:CAS:528:DC%2BD3cXhslOitw%3D%3D
-
Gray MW: Evolution of organellar genomes. Curr Opin Genet Dev. 1999, 9: 678-687. 10.1016/S0959-437X(99)00030-1. DOI: 10.1016/S0959-437X(99)00030-1
-
(1999)
Curr Opin Genet Dev
, vol.9
, pp. 678-687
-
-
Gray, M.W.1
-
6
-
-
0033956060
-
The COG database: a tool for genome-scale analysis of protein functions and evolution
-
PID: 10592175, COI: 1:CAS:528:DC%2BD3cXhvVGqu7w%3D
-
Tatusov RL, Galperin MY, Natale DA, Koonin EV: The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 2000, 28: 33-36. 10.1093/nar/28.1.33. DOI: 10.1093/nar/28.1.33
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 33-36
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Natale, D.A.3
Koonin, E.V.4
-
7
-
-
0030660581
-
A genomic perspective on protein families
-
PID: 9381173, COI: 1:CAS:528:DyaK2sXmvVOrsL0%3D
-
Tatusov RL, Koonin EV, Lipman DJ: A genomic perspective on protein families. Science. 1997, 278: 631-637. 10.1126/science.278.5338.631. DOI: 10.1126/science.278.5338.631
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
8
-
-
0031736121
-
Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles
-
PID: 9825671, COI: 1:CAS:528:DyaK1cXns1ynur8%3D
-
Aravind LR, Tatusov L, Wolf YI, Walker DR, Koonin EV: Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles. Trends Genet. 1998, 14: 442-444. 10.1016/S0168-9525(98)01553-4. DOI: 10.1016/S0168-9525(98)01553-4
-
(1998)
Trends Genet
, vol.14
, pp. 442-444
-
-
Aravind, L.R.1
Tatusov, L.2
Wolf, Y.I.3
Walker, D.R.4
Koonin, E.V.5
-
9
-
-
0033609333
-
Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima
-
PID: 10360571, COI: 1:CAS:528:DyaK1MXjs1WnsLo%3D
-
Nelson KE, Clayton RA, Gill SR, Gwinn ML, Dodson RJ, Haft DH, Hickey EK, Peterson JD, Nelson WC, Ketchum KA, et al: Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nature. 1999, 399: 323-329. 10.1038/20601. DOI: 10.1038/20601
-
(1999)
Nature
, vol.399
, pp. 323-329
-
-
Nelson, K.E.1
Clayton, R.A.2
Gill, S.R.3
Gwinn, M.L.4
Dodson, R.J.5
Haft, D.H.6
Hickey, E.K.7
Peterson, J.D.8
Nelson, W.C.9
Ketchum, K.A.10
-
10
-
-
0032561496
-
Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis
-
PID: 9784136, COI: 1:CAS:528:DyaK1cXmvFyjtr4%3D
-
Stephens RS, Kalman S, Lammel C, Fan J, Marathe R, Aravind L, Mitchell W, Olinger L, Tatusov RL, Zhao Q, et al: Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis. Science. 1998, 282: 754-759. 10.1126/science.282.5389.754. DOI: 10.1126/science.282.5389.754
-
(1998)
Science
, vol.282
, pp. 754-759
-
-
Stephens, R.S.1
Kalman, S.2
Lammel, C.3
Fan, J.4
Marathe, R.5
Aravind, L.6
Mitchell, W.7
Olinger, L.8
Tatusov, R.L.9
Zhao, Q.10
-
11
-
-
0033955942
-
Comparative genome analysis of pathogenic spirochetes - Borrelia burgdorferi and Treponema pallidum
-
PID: 10678983, COI: 1:CAS:528:DC%2BD3cXhsVKrsbc%3D
-
Subramanian G, Koonin EV, Aravind L: Comparative genome analysis of pathogenic spirochetes - Borrelia burgdorferi and Treponema pallidum. Infect Immun. 2000, 68: 1633-1648. 10.1128/IAI.68.3.1633-1648.2000. DOI: 10.1128/IAI.68.3.1633-1648.2000
-
(2000)
Infect Immun
, vol.68
, pp. 1633-1648
-
-
Subramanian, G.1
Koonin, E.V.2
Aravind, L.3
-
12
-
-
0032962345
-
Rickettsiae and Chlamydiae: evidence of horizontal gene transfer and gene exchange
-
PID: 10322483, COI: 1:CAS:528:DyaK1MXjt12mtbY%3D
-
Wolf YI, Aravind L, Koonin EV: Rickettsiae and Chlamydiae: evidence of horizontal gene transfer and gene exchange. Trends Genet. 1999, 15: 173-175. 10.1016/S0168-9525(99)01704-7. DOI: 10.1016/S0168-9525(99)01704-7
-
(1999)
Trends Genet
, vol.15
, pp. 173-175
-
-
Wolf, Y.I.1
Aravind, L.2
Koonin, E.V.3
-
13
-
-
0029006062
-
The multiplicity of domains in proteins
-
PID: 7574483, COI: 1:CAS:528:DyaK2MXmsl2qsbw%3D
-
Doolittle RF: The multiplicity of domains in proteins. Annu Rev Biochem. 1995, 64: 287-314. 10.1146/annurev.bi.64.070195.001443. DOI: 10.1146/annurev.bi.64.070195.001443
-
(1995)
Annu Rev Biochem
, vol.64
, pp. 287-314
-
-
Doolittle, R.F.1
-
14
-
-
0033523989
-
Protein interaction maps for complete genomes based on gene fusion events
-
PID: 10573422, COI: 1:CAS:528:DyaK1MXntlCms7s%3D
-
Enright AJ, Ilipoulos I, Kyrpides NC, Ouzounis CA: Protein interaction maps for complete genomes based on gene fusion events. Nature. 1999, 402: 86-90. 10.1038/47056. DOI: 10.1038/47056
-
(1999)
Nature
, vol.402
, pp. 86-90
-
-
Enright, A.J.1
Ilipoulos, I.2
Kyrpides, N.C.3
Ouzounis, C.A.4
-
15
-
-
0034084865
-
Who is your neighbor: new computational approaches in functional genomics
-
PID: 10835597, COI: 1:CAS:528:DC%2BD3cXkt12gtr8%3D
-
Galperin MY, Koonin EV: Who is your neighbor: new computational approaches in functional genomics. Nat Biotechnol. 2000, 18: 609-613. 10.1038/76443. DOI: 10.1038/76443
-
(2000)
Nat Biotechnol
, vol.18
, pp. 609-613
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
16
-
-
0033618555
-
Detecting protein function and protein-protein interactions from genome sequences
-
PID: 10427000, COI: 1:CAS:528:DyaK1MXltVehtbg%3D
-
Marcotte EM, Pellegrini M, Ng HL, Rice DW, Yeates TO, Eisenberg D: Detecting protein function and protein-protein interactions from genome sequences. Science. 1999, 285: 751-753. 10.1006/bbrc.2001.5221. DOI: 10.1126/science.285.5428.751
-
(1999)
Science
, vol.285
, pp. 751-753
-
-
Marcotte, E.M.1
Pellegrini, M.2
Ng, H.L.3
Rice, D.W.4
Yeates, T.O.5
Eisenberg, D.6
-
17
-
-
0033523854
-
A combined algorithm for genome-wide prediction of protein function
-
PID: 10573421, COI: 1:CAS:528:DyaK1MXntlCms78%3D
-
Marcotte EM, Pellegrini M., Thompson MJ, Yeates TO, Eisenberg D: A combined algorithm for genome-wide prediction of protein function. Nature. 1999, 402: 83-86. 10.1038/47048. DOI: 10.1038/47048
-
(1999)
Nature
, vol.402
, pp. 83-86
-
-
Marcotte, E.M.1
Pellegrini, M.2
Thompson, M.J.3
Yeates, T.O.4
Eisenberg, D.5
-
18
-
-
0033485460
-
DNA-binding proteins and evolution of transcription regulation in the archaea
-
PID: 10556324, COI: 1:CAS:528:DyaK1MXnvVanu7k%3D
-
Aravind L, Koonin EV: DNA-binding proteins and evolution of transcription regulation in the archaea. Nucleic Acids Res. 1999, 27: 4658-4670. 10.1093/nar/27.23.4658. DOI: 10.1093/nar/27.23.4658
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 4658-4670
-
-
Aravind, L.1
Koonin, E.V.2
-
19
-
-
0033277340
-
The histidine protein kinase superfamily
-
PID: 10500846, COI: 1:CAS:528:DC%2BD3cXjvFSgsA%3D%3D
-
Grebe TW, Stock JB: The histidine protein kinase superfamily. Adv Microb Physiol. 1999, 41: 139-227. DOI: 10.1016/S0065-2911(08)60167-8
-
(1999)
Adv Microb Physiol
, vol.41
, pp. 139-227
-
-
Grebe, T.W.1
Stock, J.B.2
-
20
-
-
0028104094
-
The bacterial phosphotransferase system: new frontiers 30 years later
-
PID: 7815935, COI: 1:CAS:528:DyaK2cXlslCktrw%3D
-
Saier MH, Reizer J: The bacterial phosphotransferase system: new frontiers 30 years later. Mol Microbiol. 1994, 13: 755-764. DOI: 10.1111/j.1365-2958.1994.tb00468.x
-
(1994)
Mol Microbiol
, vol.13
, pp. 755-764
-
-
Saier, M.H.1
Reizer, J.2
-
21
-
-
0034625235
-
The impact of comparative genomics on our understanding of evolution
-
PID: 10892642, COI: 1:CAS:528:DC%2BD3cXkt1Wrsbg%3D
-
Koonin EV, Aravind L, Kondrashov AS: The impact of comparative genomics on our understanding of evolution. Cell. 2000, 101: 573-576. 10.1016/S0092-8674(00)80867-3. DOI: 10.1016/S0092-8674(00)80867-3
-
(2000)
Cell
, vol.101
, pp. 573-576
-
-
Koonin, E.V.1
Aravind, L.2
Kondrashov, A.S.3
-
22
-
-
0032766490
-
Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell
-
PID: 10413400, COI: 1:CAS:528:DyaK1MXkvV2itbg%3D
-
Makarova KS, Aravind L, Galperin MY, Grishin NV, Tatusov RL, Wolf YI, Koonin EV: Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell. Genome Res. 1999, 9: 608-628.
-
(1999)
Genome Res
, vol.9
, pp. 608-628
-
-
Makarova, K.S.1
Aravind, L.2
Galperin, M.Y.3
Grishin, N.V.4
Tatusov, R.L.5
Wolf, Y.I.6
Koonin, E.V.7
-
23
-
-
0032830481
-
Evolution of aminoacyl-tRNA synthetases - analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events
-
PID: 10447505, COI: 1:CAS:528:DyaK1MXls1yhurw%3D
-
Wolf YI, Aravind L, Grishin NV, Koonin EV: Evolution of aminoacyl-tRNA synthetases - analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events. Genome Res. 1999, 9: 689-710.
-
(1999)
Genome Res
, vol.9
, pp. 689-710
-
-
Wolf, Y.I.1
Aravind, L.2
Grishin, N.V.3
Koonin, E.V.4
-
24
-
-
85182629533
-
-
National Center for Biotechnology Information
-
National Center for Biotechnology Information. [http://www.ncbi.nlm.nih.gov/Entrez/Genome/org.html]
-
-
-
-
25
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
PID: 9254694, COI: 1:CAS:528:DyaK2sXlvFyhu7w%3D
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25: 3389-3402. 10.1093/nar/25.17.3389. DOI: 10.1093/nar/25.17.3389
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
26
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
PID: 7984417, COI: 1:CAS:528:DyaK2MXitlSgu74%3D
-
Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22: 4673-4680. DOI: 10.1093/nar/22.22.4673
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
27
-
-
0029901637
-
Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
-
PID: 8743697, COI: 1:CAS:528:DyaK28Xltl2nt7g%3D
-
Felsenstein J: Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. Methods Enzymol. 1996, 266: 418-427. 10.1016/S0076-6879(96)66026-1. DOI: 10.1016/S0076-6879(96)66026-1
-
(1996)
Methods Enzymol
, vol.266
, pp. 418-427
-
-
Felsenstein, J.1
-
28
-
-
0031793928
-
PSI-BLAST - a tool for making discoveries in sequence databases
-
PID: 9852764, COI: 1:CAS:528:DyaK1cXotVWksLk%3D
-
Altschul SF, Koonin EV: PSI-BLAST - a tool for making discoveries in sequence databases. Trends Biochem Sci. 1998, 23: 444-447. 10.1016/S0968-0004(98)01298-5. DOI: 10.1016/S0968-0004(98)01298-5
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 444-447
-
-
Altschul, S.F.1
Koonin, E.V.2
-
29
-
-
85182658849
-
-
BOXSHADE. [http://www.ch.embnet.org/software/BOX_form.html]
-
-
-
|