Prokaryotic orthologues of mitochondrial alternative oxidase and plastid terminal oxidase

Plant Molecular Biology

Volumn 53, Issue 6, 2003, Pages 865-876

  McDonald, Allison E ^a   Amirsadeghi, Sasan ^a   Vanlerberghe, Greg C ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

Alternative oxidase; Chlororespiration; Endosymbiosis; Orthologues; Plastoquinol terminal oxidase; Prokaryotic

Indexed keywords

ALGAE; AMINO ACIDS; BACTERIA; BIOSYNTHESIS; DATABASE SYSTEMS; FUNGI; GENES;

ALTERNATIVE OXIDASE (AOX); CYANOBACTERIA;

PROTEINS;

ALGAE; ALPHAPROTEOBACTERIA; ANABAENA; ANABAENA VARIABILIS; BACTERIA (MICROORGANISMS); CYANOBACTERIA; EMBRYOPHYTA; EUKARYOTA; FUNGI; PROKARYOTA; PROTISTA; UNCULTURED ALPHA PROTEOBACTERIUM;

ALTERNATIVE OXIDASE; ARABIDOPSIS PROTEIN; BACTERIAL DNA; BACTERIAL RNA; OXIDOREDUCTASE; PTOX PROTEIN, ARABIDOPSIS;

AMINO ACID SEQUENCE; ANABAENA; ARTICLE; COMPARATIVE STUDY; ENZYMOLOGY; EUKARYOTIC CELL; GENE EXPRESSION REGULATION; GENETICS; MITOCHONDRION; MOLECULAR GENETICS; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROKARYOTIC CELL; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SOUTHERN BLOTTING;

AMINO ACID SEQUENCE; ANABAENA; ARABIDOPSIS PROTEINS; BLOTTING, NORTHERN; BLOTTING, SOUTHERN; CONSERVED SEQUENCE; DNA, BACTERIAL; EUKARYOTIC CELLS; GENE EXPRESSION REGULATION, ENZYMOLOGIC; MITOCHONDRIA; MOLECULAR SEQUENCE DATA; OXIDOREDUCTASES; PHYLOGENY; PROKARYOTIC CELLS; RNA, BACTERIAL; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 3242700606     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:PLAN.0000023669.79465.d2     Document Type: Article

References (46)

1. Albury, M.S., Affourtit, C., Crichton, P.G. and Moore, A.L. 2002. Structure of the plant alternative oxidase: site-directed mutagenesis provides new information on the active site and membrane topology. J. Biol. Chem. 277: 1190-1194.
2. Andersson, M.E. and Nordlund, P. 1999. A revised model of the active site of alternative oxidase. FEBS Lett. 449: 17-22.
3. Archibald, J.M., Rogers, M.B, Toop, M., Ishida, K. and Keeling, P.J. 2003. Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans. Proc. Natl. Acad. Sci. USA 100: 7678-7683.
4. 2 concentrating mechanisms in cyanobacteria: molecular components, their diversity and evolution. J. Exp. Bot. 54: 609-622.
5. Berry, S. 2003. Endosymbiosis and the design of eukaryotic electron transport. Biochim. Biophys. Acta 1606: 57-72.
6. Berry, S., Schneider, D., Vermass, W.F.J. and Rogner, M. 2002. Electron transport routes in whole cells of Synechocystis sp. strain PCC 6803: the role of the cytochrome bd-type oxidase. Biochemistry 41: 3422-3429.
7. Berthold, D.A. and Stenmark, P. 2003. Membrane-bound diiron carboxylate proteins. Annu. Rev. Plant Biol. 54: 497-517.
8. Berthold, D.A., Andersson, M.E. and Nordlund, P. 2000. New insight into the structure and function of the alternative oxidase. Biochim. Biophys. Acta 1460: 241-254.
9. Berthold, D.A., Voevodskaya, N., Stenmark, P., Graslund, A. and Nordlund, P. 2002. EPR studies of the mitochondrial alternative oxidase. Evidence for a diiron carboxylate center. J. Biol. Chem. 277: 43608-43614.
10. Carol, P. and Kuntz, M. 2001. A plastid terminal oxidase comes to light: implications for carotenoid biosynthesis and chlororespiration. Trends Plant Sci. 6: 31-36.
11. Carol, P., Stevenson, D., Bisanz, C., Breitenbach, J., Sandmann, G., Mache, R., Coupland, G. and Kuntz, M. 1999. Mutations in the Arabidopsis gene IMMUTANS cause a variegated phenotype by inactivating a chloroplast terminal oxidase associated with phytoene desaturation. Plant Cell 11: 57-68.
12. Cavalier-Smith, T. 2002. Chloroplast evolution: secondary symbiogenesis and multiple losses. Curr. Biol. 12: R62-R64.
13. Church, G.M. and Gilbert, W. 1984. Genomic sequencing. Proc. Natl. Acad. Sci. USA 81: 1991-1995.
14. Considine, M.J., Holtzapffel, R.C., Day, D.A., Whelan, J. and Millar, A.H. 2002. Molecular distinction between alternative oxidase from monocots and dicots. Plant Physiol. 129: 949-953.
15. Cournac, L., Redding, K., Ravenel, J., Rumeau, D., Josse, E.M., Kuntz, M. and Peltier, G. 2000. Electron flow between photosystem II and oxygen in chloroplasts of photosystem I-deficient algae is mediated by a quinol oxidase involved in chlororespiration. J. Biol. Chem. 275: 17256-17262.
16. de Vries, J., Meier, P. and Wackernagel, W. 2001. The natural transformation of the soil bacteria Pseudomonas stutzeri and Acinetobacter sp. by transgenic plant DNA strictly depends on homologous sequences in the recipient cells. FEMS Microbiol. Lett. 195: 211-215.
17. Elthon, T.E., Nickels, R.L., and McIntosh, L. 1989. Monoclonal antibodies to the alternative oxidase of higher plant mitochondria. Plant Physiol. 89: 1311-1317.
18. Emelyanov, V.V. 2003. Mitochondrial connection to the origin of the eukaryote cell. Eur. J. Biochem. 270: 1599-1618.
19. Finnegan, P.M., Umbach, A.L. and Wilce, J.A. 2003. Prokaryotic origins for the mitochondrial alternative oxidase and plastid terminal oxidase nuclear genes. FEBS Lett. 555: 425-430.
20. Finnegan, P.M., Wooding, A.R. and Day, D.A. 1999. An alternative oxidase monoclonal antibody recognizes a highly conserved sequence among alternative oxidase subunits. FEBS Lett. 447: 21-24.
21. Gray, M.W., Burger, G. and Lang, B.F. 1999. Mitochondrial evolution. Science 283: 1476-1481.
22. Gray, M.W., Burger, G. and Lang, B.F. 2001. The origin and early evolution of mitochondria. Genome Biol. 2: 1018.1-1018.5.
23. Howitt, C.A. and Vermaas, W.F.J. 1998. Quinol and cytochrome oxidases in the cyanobacterium Synechocystis sp. PCC6803. Biochemistry 37: 17944-17951.
24. Joet, T., Genty, B., Josse, E.M., Kuntz, M., Cournac, L. and Peltier, G. 2002. Involvement of a plastid terminal oxidase in plastoquinone oxidation as evidenced by expression of the Arabidopsis thaliana enzyme in tobacco. J. Biol. Chem. 277: 31623-31630.
25. Josse E.-M., Alcaraz J.-R, Labouré A.-M. and Kuntz, M. 2003. In vitro characterization of a plastid terminal oxidase (PTOX). Eur. J. Biochem. 270: 3787-3794.
26. Kaneko, T., Nakamura, Y., Wolk, C.P., Kuritz, T., Sasamoto, S., Watanabe, A., Iriguchi, M., Ishikawa, A., Kawashima, K., Kimura, T., Kishida, Y., Kohara, M., Matsumoto, M., Matsuno, A., Muraki, A., Nakazaki, N., Shimpo, S., Sugimoto, M., Takazawa, M., Yamada, M., Yasuda, M. and Tabata, S. 2001. Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120. DNA Res. 8: 205-213.
27. Kumar, S., Tamura, K., Jakobsen, I.B. and Nei, M. 2001. MEGA2: Molecular Evolutionary Genetics Analysis Software, Arizona State University, USA.
28. Kurland, C.G., Canback, B. and Berg O.G. 2003. Horizontal gene transfer: a critical view. Proc. Natl. Acad. Sci. USA 100: 9658-9662.
29. Maniatis, T., Fritsch, E.F. and Sambrook, J. 1982. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Plainview, NY.
30. Martin, W., Rujan, T., Richly, E., Hansen, A., Cornelsen, S., Lins, T., Leister, D., Stoebe, B., Hasegawa, M. and Penny, D. 2002. Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc. Natl. Acad. Sci. USA 99: 12246-12251.
31. Møller, I.M. 2001. Plant mitochondria and oxidative stress: Electron transport, NADPH turnover, and metabolism of reactive oxygen species. Annu. Rev. Plant Physiol. Plant Mol. Biol. 52: 561-591.
32. Moore, A.L., Albury, M.S., Crichton, P.G. and Affourtit, C. 2002. Function of the alternative oxidase: is it still a scavenger? Trends Plant Sci. 7: 478-181.
33. Peltier, G. and Cournac, L. 2002. Chlororespiration. Annu. Rev. Plant Biol. 53: 523-550.
34. Rippka, R., Deruelles, J., Waterbury, J.B., Herdman, M. and Stanier, R.Y. 1979. Generic assignments, strain histories and properties of pure cultures of cyanobacteria. J. Gen. Microbiol. 111: 1-61.
35. Rizhsky, L., Hallak-Herr, E., Van Breusegem, F., Rachmilevitch, S., Barr, J.E., Rodermel, S., Inzé, D. and Mittler, R. 2002. Double antisense plants lacking ascorbate peroxidase and catalase are less sensitive to oxidative stress than single antisense plants lacking ascorbate peroxidase or catalase. Plant J. 32: 329-342.
36. Robson, C.A. and Vanlerberghe, G.C. 2002. Transgenic plant cells lacking mitochondrial alternative oxidase have increased susceptibility to mitochondria-dependent and -independent pathways of programmed cell death. Plant Physiol. 129: 1908-1920.
37. Rocap, G., Larimer, F.W., Lamerdin, J., Malfatti, S., Chain, P., Ahlgren, N.A., Arellano, A., Coleman, M., Hauser, L., Hess, W.R., Johnson, Z.I., Land, M., Lindell, D., Post, A.F., Regala, W., Shah, M., Shaw, S.L., Steglich, C., Sullivan, M.B., Ting, C.S., Tolonen, A., Webb, E.A., Zinser, E.R. and Chisholm, S.W. 2003. Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature 424: 1042-1047.
38. Scherer, S. 1990. Do photosynthetic and respiratory electron transport chains share redox proteins? Trends Biochem. Sci. 15: 458-162.
39. Schreiber, U., Gademann, R., Bird, P., Ralph, P., Larkum, A.W.D. and Kuhl, M. 2002. Apparent light requirement for activation of photosynthesis upon rehydration of desiccated beachrock microbial mats. J. Phycol. 38: 125-134.
40. Siedow, J.N. and Umbach, A.L. 2000. The mitochondrial cyanide-resistant oxidase: structural conservation amid regulatory diversity. Biochim. Biophys. Acta 1459: 432-439.
41. Simons, B.H. and Lambers, H. 1999. The alternative oxidase: is it a respiratory pathway allowing a plant to cope with stress? In: H.R. Lerner (Ed.) Plant Responses to Environmental Stresses: From Phytohormones to Genome Reorganization, Marcel Dekker, New York, pp. 265-286.
42. Stenmark, P. and Nordlund, P. 2003. A prokaryotic alternative oxidase present in the bacterium Novosphingobium aromaticivorans. FEBS Lett. 552: 189-192.
43. Tepfer, D., Garcia-Gonzales, R., Mansouri, H., Seruga, M., Message, B., Leach, F., and Perica, M.C. 2003. Homology-dependent DNA transfer from plants to a soil bacterium under laboratory conditions: implications in evolution and horizontal gene transfer. Transgenic Res. 12: 425-437.
44. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. and Higgins, D.G. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 24: 4876-4882.
45. Ting, C.S., Rocap, G., King, J., and Chisholm, S.W. 2002. Cyanobacterial photosynthesis in the oceans: the origins and significance of divergent light-harvesting strategies. Trends Microbiol. 10: 134-142.
46. Wu, D.Y., Wright, D.A., Wetzel, C., Voytas, D.F. and Rodermel, S. 1999. The IMMUTANS variegation locus of Arabidopsis defines a mitochondrial alternative oxidase homolog that functions during early chloroplast biogenesis. Plant Cell 11: 43-56.