The need for metabolic mapping in living cells and tissues

Acta Histochemica

Volumn 106, Issue 2, 2004, Pages 89-96

  Boonacker, Emil ^a   Stap, Jan ^a   Koehler, Angela ^b   Van Noorden, Cornell's J F ^a  

^a UNIVERSITY OF AMSTERDAM   (Netherlands)

^b ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESEARCH   (Germany)

Author keywords

Biocomplexity; Enzyme histochemistry; Image analysis; Live cells; Metabolic mapping

Indexed keywords

ENZYME KINETICS; GENES; IMAGE ANALYSIS; PROTEINS; RNA; TISSUE;

BIOCOMPLEXITY; ENZYME HISTOCHEMISTRY; LIVE CELLS; METABOLIC MAPPING;

METABOLISM;

ACTIN; DIPEPTIDYL PEPTIDASE IV; FRUCTOSE BISPHOSPHATE ALDOLASE; GLUCOSE 6 PHOSPHATE DEHYDROGENASE; GLUCOSE 6 PHOSPHATE ISOMERASE; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; MESSENGER RNA; NEUROLEUKIN; NEUROPILIN; PROLINE DEHYDROGENASE; PYRROLINE DERIVATIVE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE; URACIL DNA GLYCOSYLTRANSFERASE; ENZYME;

ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME MECHANISM; GENE CONTROL; GENETIC TRANSCRIPTION; HUMAN; IMAGE ANALYSIS; METABOLIC REGULATION; MICROSCOPY; NONHUMAN; PROTEIN EXPRESSION; PROTEIN INTERACTION; REVIEW; TRANSLATION REGULATION; ANIMAL; CELL; CHEMISTRY; CYTOCHEMISTRY; ENZYMOLOGY; GENE EXPRESSION REGULATION; METABOLISM; METHODOLOGY; PROTEIN SYNTHESIS;

ANIMALS; CELLS; ENZYMES; GENE EXPRESSION REGULATION, ENZYMOLOGIC; HISTOCYTOCHEMISTRY; HUMANS; PROTEIN BIOSYNTHESIS; RNA, MESSENGER; TRANSCRIPTION, GENETIC;

EID: 16644382122     PISSN: 00651281     EISSN: 16180372     Source Type: Journal    
DOI: 10.1016/j.acthis.2004.01.002     Document Type: Article

References (65)

1. Amraei M, Jia Z, Reboul P, Nabi IR. Acid-induced conformational changes in phosphoglucose isomerase result in its increased cell surface association and deposition on fibronectin fibrils. J Biol Chem 2003;278:38935-41.
2. Amraei M, Nabi IR. Species specificity of the cytokine function of phosphoglucose isomerase. FEBS Lett 2002;525:151-5.
3. Amsterdam A. The post-genetic era from the gene to the function and in situ localization in the living organism. Acta Histochem 2003;105:354.
4. Aragon JJ, Sols A. Regulation of enzyme activity in the cell: effect of enzyme concentration. FASEB J 1991;5:2945-50.
5. Arnold H, Pette D. Binding of glycolytic enzymes to structure proteins of the muscle. Eur J Biochem 1968;6:163-71.
6. Boonacker EP, Van Noorden CJF. Enzyme cytochemical techniques for metabolic mapping in living cells, with special reference to proteolysis. J Histochem Cytochem 2001;49:1473-86.
7. Boonacker EP, Van Noorden CJF. The multifunctional or moonlighting protein CD26/DPPIV. Eur J Cell Biol 2003;82:53-73.
8. Boonacker EP, Wierenga EA, Smits HH, Van Noorden CJF. CD26/DPPIV signal transduction function, but not proteolytic activity, is directly related to its expression level on human Th1 and Th2 cell lines as detected with living cell cytochemistry. J Histochem Cytochem 2002;50:1169-77.
9. Boonacker E, Elferink S, Bardai A, Fleischer B, Van Noorden CJF. Fluorogenic substrate [Ala-Pro]2-cresyl violet but not Ala-Pro-rhodamine 110 is cleaved specifically by DPPIV activity: a study in living Jurkat cells and CD26/DPPIV-transfected Jurkat cells. J Histochem Cytochem 2003;51:959-68.
10. Boonacker E, Elferink S, Bardai A, Wormmeester J, Van Noorden CJF. Rapid assay to detect possible natural substrates of proteases in living cells. BioTechniques 2003;35:766-74.
11. Cascante M, Boros LG, Comin-Anduix B, de Atauri P, Centelles JJ, Lee PW. Metabolic control analysis in drug discovery and disease. Nat Biotechnol 2002;20:243-9.
12. Davidson JN, Chen KC, Jamison RS, Musmanno LA, Kern CB. The evolutionary history of the first three enzymes in pyrimidine biosynthesis. Bioessays 1993;15:157-64.
13. Duncan JA, Storey KB. Subcellular enzyme binding and the regulation of glycolysis in anoxic turtle brain. Am J Physiol 1992;262:R517-23.
14. Ejiri S. Moonlighting functions of polypeptide elongation factor 1: from actin bundling to zinc finger protein R1-associated nuclear localization. Biosci Biotechnol Biochem 2002;66:1-21.
15. Fulton AB. How crowded is the cytoplasm? Cell 1982;30:345-7.
16. Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, Rick JM, Michon AM, Cruciat CM, Remor M, Hofert C, Schelder M, Brajenovic M, Ruffner H, Merino A, Klein K, Hudak M, Dickson D, Rudi T, Gnau V, Bauch A, Bastuck S, Huhse B, Leutwein C, Heurtier MA, Copley RR, Edelmann A, Querfurth E, Rybin V, Drewes G, Raida M, Bouwmeester T, Bork P, Seraphin B, Kuster B, Neubauer G, Superti-Furga G. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 2002;415: 141-7.
17. Gavin AC, Superti-Furga G. Protein complexes and proteome organization from yeast to man. Curr Opin Chem Biol 2003;7:21-7.
18. Groen AK, Vervoorn RC, Van der Meer R, Tager JM. Control of gluconeogenesis in rat liver cells. I. Kinetics of the individual enzymes and the effect of glucagon. J Biol Chem 1983;258:14346-53.
19. Gurney ME, Apatoff BR, Spear GT, Baumel MJ, Antel JP, Bania MB, Reder AT. Neuroleukin: a lymphokine product of lectin-stimulated T cells. Science 1986;234:574-81.
20. Gutschmidt S, Gossrau R. A quantitative histochemical study of dipeptidylpeptidase IV (DPP IV). Histochemistry 1981;73:285-304.
21. Hahn K, Toutchkine A. Live-cell fluorescent biosensors for activated signaling proteins. Curr Opin Cell Biol 2002;14:167-72.
22. Haugland RP. Detecting enzymatic activity in cells using fluorogenic substrates. Biotech Histochem 1995;70:243-51.
23. Hehre EJ. Glycosyl transfer: a history of the concept's development and view of its major contributions to biochemistry. Carbohydr Res 2001;331:347-68.
24. Hulme EC, Tipton KF. The dependence of phosphofructo-kinase kinetics upon protein concentration. FEBS Lett 1971;12:197-200.
25. Jeffery CJ. Moonlighting proteins. Trends Biochem Sci 1999;24:8-11.
26. Koehler A, Van Noorden CJF. Reduced nicotinamide adenine dinucleotide phosphate and the higher incidence of pollution-induced liver cancer in female flounder. Environ Toxicol Chem 2003;22:2703-10.
27. Kusakabe T, Motoki K, Hori K. Mode of interactions of human aldolase isozymes with cytoskeletons. Arch Biochem Biophys 1997;344:184-93.
28. Lee BW, Johnson GL, Hed SA, Darzynkiewicz Z, Talhouk JW, Mehrotra S. DEVDase detection in intact apoptotic cells using the cell permeant fluorogenic substrate, (z-DEVD)2-cresyl violet. BioTechniques 2003;35:1080-5.
29. Li X, Chirgwin JM. Rabbit phosphoglucose isomerase/neuroleukin/autocrine motility factor: cloning via interspecies identity. Biochim Biophys Acta 2000; 1476:363-7.
30. Masters CJ. Interactions between soluble enzymes and subcellular structure. CRC Crit Rev Biochem 1981;11:105-43.
31. Mazzola JL, Sirover MA. Subcellular localization of human glyceraldehyde-3-phosphate dehydrogenase is independent of its glycolytic function. Biochim Biophys Acta 2003;1622:50-6.
32. McNeil PL. Incorporation of macromolecules into living cells. Methods Cell Biol 1989;29:153-73.
33. Meyer-Siegler K, Mauro DJ, Seal G, Wurzer J, deRiel JK, Sirover MA. A human nuclear uracil DNA glycosylase is the 37-kDa subunit of glyceraldehyde-3-phosphate dehydrogenase. Proc Natl Acad Sci USA 1991;88:8460-4.
34. Miklos GL, Maleszka R. Protein functions and biological contexts. Proteomics 2001;1:169-78.
35. Minaschek G, Groschel-Stewart U, Blum S, Bereiter-Hahn J. Microcompartmentation of glycolytic enzymes in cultured cells. Eur J Cell Biol 1992;58:418-28.
36. Minton AP, Wilf J. Effect of macromolecular crowding upon the structure and function of an enzyme: glyceraldehyde-3-phosphate dehydrogenase. Biochemistry 1981;20:4821-6.
37. Muro-Pastor AM, Ostrovsky P, Maloy S. Regulation of gene expression by repressor localization: biochemical evidence that membrane and DNA binding by the PutA protein are mutually exclusive. J Bacteriol 1997;179:2788-91.
38. Okada CY, Rechsteiner M. Introduction of macromolecules into cultured mammalian cells by osmotic lysis of pinocytic vesicles. Cell 1982;29:33-41.
39. Ostrovsky de Spicer P, Maloy S. PutA protein, a membrane-associated flavin dehydrogenase, acts as a redox-dependent transcriptional regulator. Proc Natl Acad Sci USA 1993;90:4295-8.
40. Ovadi J. Old pathway - new concept: control of glycolysis by metabolite-modulated dynamic enzyme associations. Trends Biochem Sci 1988;13:486-90.
41. Ovadi J, Srere PA. Macromolecular compartmentation and channeling. Int Rev Cytol 2000;192:255-80.
42. Patton WF, Beechem JM. Rainbow's end: the quest for multiplexed fluorescence quantitative analysis in proteomics. Curr Opin Chem Biol 2002;6:63-9.
43. Perham RN. Swinging arms and swinging domains in multifunctional enzymes: catalytic machines for multistep reactions. Annu Rev Biochem 2000;69: 961-1004.
44. Pette D, Brandau H. Intracellular localization of glycolytic enzymes in cross-striated muscles of Locusta migratoria. Biochem Biophys Res Commun 1962;9: 367-70.
45. Ravesloot JH. Dit het hart gegrepen. The Netherlands: Oratie, Vossiuspers University of Amsterdam; 2002.
46. Rees BB, Swezey RR, Kibak H, Epel D. Regulation of the pentose phosphate pathway at fertilization in sea urchin eggs. Intervertebr Reprod Dev 1996;30:123-43.
47. Rettig WJ, Garin-Chesa P, Healey JH, Su SL, Ozer HL, Schwab M, Albino AP, Old LJ. Regulation and heteromeric structure of the fibroblast activation protein in normal and transformed cells of mesenchymal and neuroectodermal origin. Cancer Res 1993;53:3327-35.
48. Rettig WJ, Su SL, Fortunate SR, Scanlan MJ, Raj BK, Garin-Chesa P, Healey JH, Old LJ. Fibroblast activation protein: purification, epitope mapping and induction by growth factors. Int J Cancer 1994;58:385-92.
49. Rogalski AA, Steck TL, Waseem A. Association of glyceraldehyde-3- phosphate dehydrogenase with the plasma membrane of the intact human red blood cell. J Biol Chem 1989;264:6438-46.
50. Sameni M, Moin K, Sloane BF. Imaging proteolysis by living human breast cancer cells. Neoplasia 2000;2:496-504.
51. Scanlan MJ, Raj BK, Calvo B, Garin-Chesa P, Sanz-Moncasi MP, Healey JH, Old LJ, Rettig WJ. Molecular cloning of fibroblast activation protein alpha, a member of the serine protease family selectively expressed in stromal fibroblasts of epithelial cancers. Proc Natl Acad Sci USA 1994;91:5657-61.
52. Schwille P, Kettling U. Analyzing single protein molecules using optical methods. Curr Opin Biotechnol 2001;12:382-6.
53. Shapiro BM. The control of oxidant stress at fertilization. Science 1991;252:533-6.
54. Sigel P, Pette D. Intracellular localization of glycogenolytic and glycolytic enzymes in white and red rabbit skeletal muscle: a gel film method for coupled enzyme reactions in histochemistry. J Histochem Cytochem 1969;17:225-37.
55. Soker S, Takashima S, Miao HQ, Neufeld G, Klagsbrun M. Neuropilin-1 is expressed by endothelial and tumor cells as an isoform-specific receptor for vascular endothelial growth factor. Cell 1998;92:735-45.
56. Srere PA. Enzyme concentrations in tissues. Science 1967;158:936-7.
57. Srere PA. The infrastructure of the mitochondrial matrix. Trends Biochem Sci 1980;5:120-1.
58. Srivastava DK, Bernhard SA. Biophysical chemistry of metabolic reaction sequences in concentrated enzyme solution and in the cell. Annu Rev Biophys Biophys Chem 1987;16:175-204.
59. Steward PJ, Nakae Y, Van Noorden CJF. The everchanging advances in enzyme histochemistry, 1986-1996. Eur J Histochem 1998;42:35-40.
60. Swezey RR, Epel D. Regulation of glucose-6-phosphate dehydrogenase activity in sea urchin eggs by reversible association with cell structural elements. J Cell Biol 1986;103:1509-15.
61. Van Noorden CJF, Jonges GN. Analysis of enzyme reactions in situ. Histochem J 1995;27:101-18.
62. Wang J, Tolan DR, Pagliaro L. Metabolic compartmentation in living cells: structural association of aldolase. Exp Cell Res 1997;237:445-51.
63. Westerhoff HV, Groen AK, Wanders RJ. Modern theories of metabolic control and their applications (review). Biosci Rep 1984;4:1-22.
64. Wiame JM. The regulation of arginine metabolism in Sarccharomyces cerevisiae: exclusion mechanisms. Curr Top Cell Regul 1971;4:1-38.
65. Winzer K, Van Noorden CJF, Koehler A. Quantitative cytochemical analysis of glucose-6-phosphate dehydrogenase activity in living isolated hepatocytes of European flounder for rapid analysis of xenobiotic effects. J Histochem Cytochem 2001;49:1025-32.