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Volumn 271, Issue 1, 2004, Pages 205-211

HIV-1 integrase can process a 3′-end crosslinked substrate Implications of DNA end-fraying requirement during the 3′-processing reaction

Author keywords

2 aminonucleoside; DNA modification; Integrase; Interstrand cross linking

Indexed keywords

1,3 PROPANEDIOL; ADENOSINE; DOUBLE STRANDED DNA; ESTER DERIVATIVE; INTEGRASE; NUCLEOSIDE DERIVATIVE; THYMIDINE;

EID: 1642539987     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1432-1033.2003.03921.x     Document Type: Article
Times cited : (10)

References (28)
  • 2
    • 0032601402 scopus 로고    scopus 로고
    • HIV integrase structure and function
    • Esposito, D. & Craigie, R. (1999) HIV integrase structure and function. Adv. Virus Res. 52, 319-333.
    • (1999) Adv. Virus Res. , vol.52 , pp. 319-333
    • Esposito, D.1    Craigie, R.2
  • 3
    • 0032544311 scopus 로고    scopus 로고
    • Crystal structures of the catalytic domain of HIV-1 integrase free and complexed with its metal cofactor: High level of similarity of the active site with other viral integrases
    • Maignan, S., Guilloteau, J.P., Zhou-Liu, Q., Clement-Mella, C. & Mikol, V. (1998) Crystal structures of the catalytic domain of HIV-1 integrase free and complexed with its metal cofactor: high level of similarity of the active site with other viral integrases. J. Mol. Biol. 282, 359-368.
    • (1998) J. Mol. Biol. , vol.282 , pp. 359-368
    • Maignan, S.1    Guilloteau, J.P.2    Zhou-Liu, Q.3    Clement-Mella, C.4    Mikol, V.5
  • 5
    • 0026072804 scopus 로고
    • Substrate specificity of recombinant human immunodeficiency virus integrase protein
    • LaFemina, R.L., Callahan, P.L. & Cordingley, M.G. (1991) Substrate specificity of recombinant human immunodeficiency virus integrase protein. J. Virol. 65, 5624-5630.
    • (1991) J. Virol. , vol.65 , pp. 5624-5630
    • LaFemina, R.L.1    Callahan, P.L.2    Cordingley, M.G.3
  • 6
    • 0026693410 scopus 로고
    • Human immunodeficiency virus type 1 integrase protein: DNA sequence requirements for cleaving and joining reactions
    • Sherman, P.A., Dickson, M.L. & Fyfe, J.A. (1992) Human immunodeficiency virus type 1 integrase protein: DNA sequence requirements for cleaving and joining reactions. J. Virol. 66, 3593-3601.
    • (1992) J. Virol. , vol.66 , pp. 3593-3601
    • Sherman, P.A.1    Dickson, M.L.2    Fyfe, J.A.3
  • 7
    • 0029166510 scopus 로고
    • Processing of deoxyuridine mismatches and abasic sites by human immunodeficiency virus type-1 integrase
    • Mazumder, A. & Pommier, Y. (1995) Processing of deoxyuridine mismatches and abasic sites by human immunodeficiency virus type-1 integrase. Nucleic Acids Res. 23, 2865-2871.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 2865-2871
    • Mazumder, A.1    Pommier, Y.2
  • 8
    • 0031050297 scopus 로고    scopus 로고
    • Disruption of the terminal base pairs of retroviral DNA during integration
    • Scottline, B.P., Chow, S., Ellison, V. & Brown, P.O. (1997) Disruption of the terminal base pairs of retroviral DNA during integration. Genes Dev. 11, 371-382.
    • (1997) Genes Dev. , vol.11 , pp. 371-382
    • Scottline, B.P.1    Chow, S.2    Ellison, V.3    Brown, P.O.4
  • 9
    • 0032189652 scopus 로고    scopus 로고
    • Sequence specificity of viral end DNA binding by HIV-1 integrase reveals critical regions for protein DNA interactions
    • Esposito, D. & Craigie, R. (1998) Sequence specificity of viral end DNA binding by HIV-1 integrase reveals critical regions for protein DNA interactions. EMBO J. 17, 5832-5843.
    • (1998) EMBO J. , vol.17 , pp. 5832-5843
    • Esposito, D.1    Craigie, R.2
  • 10
    • 0033596860 scopus 로고    scopus 로고
    • Major and minor groove contacts in retroviral integrase-LTR interactions
    • Wang, T., Balakrishnan, M. & Jonsson, C.B. (1999) Major and minor groove contacts in retroviral integrase-LTR interactions. Biochemistry 38, 3624-3632.
    • (1999) Biochemistry , vol.38 , pp. 3624-3632
    • Wang, T.1    Balakrishnan, M.2    Jonsson, C.B.3
  • 11
    • 0032546530 scopus 로고    scopus 로고
    • Thermodynamic consequences of an abasic lesion in duplex DNA are strongly dependent on base sequence
    • Gelfand, C.A., Plum, G.E., Grollman, A.P., Johnson, F. & Breslauer, K.J. (1998) Thermodynamic consequences of an abasic lesion in duplex DNA are strongly dependent on base sequence. Biochemistry 37, 7321-7327.
    • (1998) Biochemistry , vol.37 , pp. 7321-7327
    • Gelfand, C.A.1    Plum, G.E.2    Grollman, A.P.3    Johnson, F.4    Breslauer, K.J.5
  • 13
    • 0028871131 scopus 로고
    • Incorporation of 2′-amido-nucleosides in oligodeoxynucleotides and oligoribonucleotides as a model for 2′-linked conjugates
    • Hendríx, C., Devreese, B., Rozenski, J., Van Aerschot, A., De Bruyn, A., Van Seeumen, J. & Herdewijn, P. (1995) Incorporation of 2′-amido-nucleosides in oligodeoxynucleotides and oligoribonucleotides as a model for 2′-linked conjugates. Nucleic Acids Res. 23, 51-57.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 51-57
    • Hendríx, C.1    Devreese, B.2    Rozenski, J.3    Van Aerschot, A.4    De Bruyn, A.5    Van Seeumen, J.6    Herdewijn, P.7
  • 17
    • 0024240742 scopus 로고
    • Synthesis and properties of DNA duplexes containing hydrocarbon bridges instead of a nucleoside residue
    • Kuznetsova, S.A., Volkov, E.M., Gromova, E.S., Potapov, V.K. & Shabarova, Z.A. (1988) Synthesis and properties of DNA duplexes containing hydrocarbon bridges instead of a nucleoside residue. Bioorg. Khimiya (Russia) 14, 1655-1662.
    • (1988) Bioorg. Khimiya (Russia) , vol.14 , pp. 1655-1662
    • Kuznetsova, S.A.1    Volkov, E.M.2    Gromova, E.S.3    Potapov, V.K.4    Shabarova, Z.A.5
  • 20
    • 0028309772 scopus 로고
    • Molecular mechanism of retroviral DNA integration
    • Kulkosky, J. & Skalka, A.M. (1994) Molecular mechanism of retroviral DNA integration. Pharmacol Ther. 61, 185-203.
    • (1994) Pharmacol Ther. , vol.61 , pp. 185-203
    • Kulkosky, J.1    Skalka, A.M.2
  • 21
    • 0028089732 scopus 로고
    • DNA substrate requirements for different activities of the human immunodeficiency virus type 1 integrase protein
    • van den Ent, F.M., Vink, C. & Plasterk, R.H. (1994) DNA substrate requirements for different activities of the human immunodeficiency virus type 1 integrase protein. J. Virol. 68, 7825-7832.
    • (1994) J. Virol. , vol.68 , pp. 7825-7832
    • Van Den Ent, F.M.1    Vink, C.2    Plasterk, R.H.3
  • 22
    • 0028020102 scopus 로고
    • Methylphosphonodiester substitution near the conserved CA dinucleotide in the HIV LTR alters both extent of 3′-processing and choice of nucleophile by HIV-1 integrase
    • Mazumder, A., Gupta, M. & Pommier, Y. (1994) Methylphosphonodiester substitution near the conserved CA dinucleotide in the HIV LTR alters both extent of 3′-processing and choice of nucleophile by HIV-1 integrase. Nucleic Acids Res. 22, 4441-4448.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4441-4448
    • Mazumder, A.1    Gupta, M.2    Pommier, Y.3
  • 23
    • 0032522139 scopus 로고    scopus 로고
    • DNA bending: The prevalence of kinkiness and the virtues of normality
    • Dickerson, R.E. (1998) DNA bending: the prevalence of kinkiness and the virtues of normality. Nucleic Acids Res. 26, 1906-1926.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 1906-1926
    • Dickerson, R.E.1
  • 24
    • 0034614483 scopus 로고    scopus 로고
    • Sequence-dependent DNA structure: Dinucleotide conformational maps
    • Packer, M.J., Dauncey, M.P. & Hunter, C.A. (2000) Sequence-dependent DNA structure: dinucleotide conformational maps. J. Mol. Biol. 295, 71-83.
    • (2000) J. Mol. Biol. , vol.295 , pp. 71-83
    • Packer, M.J.1    Dauncey, M.P.2    Hunter, C.A.3
  • 25
    • 0032029586 scopus 로고    scopus 로고
    • Flexibility of the B-DNA backbone: Effects of local and neighbouring sequences on pyrimidine-purine steps
    • Bertrand, H., Ha-Duong, T., Fermandjian, S. & Hartmann, B. (1998) Flexibility of the B-DNA backbone: effects of local and neighbouring sequences on pyrimidine-purine steps. Nucleic Acids Res. 26, 1261-1267.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 1261-1267
    • Bertrand, H.1    Ha-Duong, T.2    Fermandjian, S.3    Hartmann, B.4
  • 26
    • 2542609960 scopus 로고    scopus 로고
    • Helix bending as a factor in protein/DNA recognition
    • Dickerson, R.E. & Chiu, T.K. (1997) Helix bending as a factor in protein/DNA recognition. Biopolymers 44, 361-403.
    • (1997) Biopolymers , vol.44 , pp. 361-403
    • Dickerson, R.E.1    Chiu, T.K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.