-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0036529621
-
Comparative genomics and evolution of proteins involved in RNA metabolism
-
Anantharaman, V., Koonin, E.V., and Aravind, L. 2002. Comparative genomics and evolution of proteins involved in RNA metabolism. Nucleic Acids Res. 30: 1427-1464.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1427-1464
-
-
Anantharaman, V.1
Koonin, E.V.2
Aravind, L.3
-
3
-
-
0034633626
-
Lineage-specific loss and divergence of functionally linked genes in eukaryotes
-
Aravind, L., Watanabe, H., Lipman, D.J., and Koonin, E.V. 2000. Lineage-specific loss and divergence of functionally linked genes in eukaryotes. Proc. Natl. Acad. Sci. 97: 11319-11324.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 11319-11324
-
-
Aravind, L.1
Watanabe, H.2
Lipman, D.J.3
Koonin, E.V.4
-
4
-
-
0036643477
-
Monophyly of class 1 aminoacyl tRNA synthetase. USPA, ETFP, photolyase, and PP-ATPase nucleotide-binding domains: Implications for protein evolution in the RNA world
-
Aravind, L., Anantharaman, V., and Koonin, E.V. 2002. Monophyly of class 1 aminoacyl tRNA synthetase, USPA, ETFP, photolyase, and PP-ATPase nucleotide-binding domains: Implications for protein evolution in the RNA world. Proteins 48: 1-14.
-
(2002)
Proteins
, vol.48
, pp. 1-14
-
-
Aravind, L.1
Anantharaman, V.2
Koonin, E.V.3
-
6
-
-
0033214408
-
Flavonoids and isoflavonoids-A gold mine for metabolic engineering
-
Dixon, R.A. and Steele, C.L. 1999. Flavonoids and isoflavonoids-A gold mine for metabolic engineering. Trends Plant Sci. 4: 394-400.
-
(1999)
Trends Plant Sci.
, vol.4
, pp. 394-400
-
-
Dixon, R.A.1
Steele, C.L.2
-
7
-
-
0042121311
-
META-PP: Single interface to crucial prediction servers
-
Eyrich, V.A. and Rost, B. 2003. META-PP: Single interface to crucial prediction servers. Nucleic Acids Res. 31: 3308-3310.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3308-3310
-
-
Eyrich, V.A.1
Rost, B.2
-
8
-
-
0038386050
-
3D-Jury: A simple approach to improve protein structure predictions
-
Ginalski, K., Elofsson, A., Fischer, D., and Rychlewski, L. 2003. 3D-Jury: A simple approach to improve protein structure predictions. Bioinformatics 19: 1015-1018.
-
(2003)
Bioinformatics
, vol.19
, pp. 1015-1018
-
-
Ginalski, K.1
Elofsson, A.2
Fischer, D.3
Rychlewski, L.4
-
9
-
-
0037383240
-
Genomic clocks and evolutionary timescales
-
Hedges, S.B. and Kumar, S. 2003. Genomic clocks and evolutionary timescales. Trends Genet. 19: 200-206.
-
(2003)
Trends Genet.
, vol.19
, pp. 200-206
-
-
Hedges, S.B.1
Kumar, S.2
-
10
-
-
0036568328
-
Structural genomics analysis: Characteristics of atypical, common, and horizontally transferred folds
-
Hegyi, H., Lin, J., Greenbaum, D., and Gerstein, M. 2002. Structural genomics analysis: Characteristics of atypical, common, and horizontally transferred folds. Proteins 47: 126-141.
-
(2002)
Proteins
, vol.47
, pp. 126-141
-
-
Hegyi, H.1
Lin, J.2
Greenbaum, D.3
Gerstein, M.4
-
11
-
-
0037059756
-
Reaction mechanism of chalcone isomerase. pH dependence, diffusion control, and product binding differences
-
Jez, J.M. and Noel, J.P. 2002. Reaction mechanism of chalcone isomerase. pH dependence, diffusion control, and product binding differences. J. Biol. Chem. 277: 1361-1369.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 1361-1369
-
-
Jez, J.M.1
Noel, J.P.2
-
12
-
-
0033813354
-
Structure and mechanism of the evolutionarily unique plant enzyme chalcone isomerase
-
Jez, J.M., Bowman, M.E., Dixon, R.A., and Noel, J.P. 2000. Structure and mechanism of the evolutionarily unique plant enzyme chalcone isomerase. Nat. Struct. Biol. 7: 786-791.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 786-791
-
-
Jez, J.M.1
Bowman, M.E.2
Dixon, R.A.3
Noel, J.P.4
-
13
-
-
0037161242
-
Role of hydrogen bonds in the reaction mechanism of chalcone isomerase
-
Jez, J.M., Bowman, M.E., and Noel, J.P. 2002. Role of hydrogen bonds in the reaction mechanism of chalcone isomerase. Biochemistry 41: 5168-5176.
-
(2002)
Biochemistry
, vol.41
, pp. 5168-5176
-
-
Jez, J.M.1
Bowman, M.E.2
Noel, J.P.3
-
14
-
-
0036295212
-
Classification and evolution of P-loop GTPases and related ATPases
-
Leipe, D.D., Wolf, Y.I., Koonin, E.V., and Aravind, L. 2002. Classification and evolution of P-loop GTPases and related ATPases. J. Mol. Biol. 317: 41-72.
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 41-72
-
-
Leipe, D.D.1
Wolf, Y.I.2
Koonin, E.V.3
Aravind, L.4
-
15
-
-
0036066765
-
The role of lineage-specific gene family expansion in the evolution of eukaryotes
-
Lespinet, O., Wolf, Y.I., Koonin, E.V., and Aravind, L. 2002. The role of lineage-specific gene family expansion in the evolution of eukaryotes. Genome Res. 12: 1048-1059.
-
(2002)
Genome Res.
, vol.12
, pp. 1048-1059
-
-
Lespinet, O.1
Wolf, Y.I.2
Koonin, E.V.3
Aravind, L.4
-
16
-
-
0033918311
-
Whole-genome trees based on the occurrence of folds and orthologs: Implications for comparing genomes on different levels
-
Lin, J. and Gerstein, M. 2000, Whole-genome trees based on the occurrence of folds and orthologs: Implications for comparing genomes on different levels. Genome Res. 10: 808-818.
-
(2000)
Genome Res.
, vol.10
, pp. 808-818
-
-
Lin, J.1
Gerstein, M.2
-
17
-
-
0035853112
-
Complete genomic sequence of Pasteurella multocida, Pm70
-
May, B.J., Zhang, Q., Li, L.L., Paustian, M.L., Whittam, T.S., and Kapur, V. 2001. Complete genomic sequence of Pasteurella multocida, Pm70. Proc. Natl. Acad. Sci. 98: 3460-3465.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 3460-3465
-
-
May, B.J.1
Zhang, Q.2
Li, L.L.3
Paustian, M.L.4
Whittam, T.S.5
Kapur, V.6
-
18
-
-
0035085234
-
Structures of β-ketoacyl-acyl carrier protein synthase I complexed with fatty acids elucidate its catalytic machinery
-
Olsen, J.G., Kadziola, A., von Wettstein-Knowles, P., Siggaard-Andersen, M., and Larsen, S. 2001. Structures of β-ketoacyl-acyl carrier protein synthase I complexed with fatty acids elucidate its catalytic machinery. Structure 9: 233-243.
-
(2001)
Structure
, vol.9
, pp. 233-243
-
-
Olsen, J.G.1
Kadziola, A.2
Von Wettstein-Knowles, P.3
Siggaard-Andersen, M.4
Larsen, S.5
-
19
-
-
0035782687
-
Review: What can structural classifications reveal about protein evolution?
-
Orengo, C.A., Sillitoe, I., Reeves, G., and Pearl, F.M. 2001. Review: What can structural classifications reveal about protein evolution? J. Struct. Biol. 134: 145-165.
-
(2001)
J. Struct. Biol.
, vol.134
, pp. 145-165
-
-
Orengo, C.A.1
Sillitoe, I.2
Reeves, G.3
Pearl, F.M.4
-
20
-
-
0035798398
-
Protein family and fold occurrence in genomes: Power-law behaviour and evolutionary model
-
Qian, J., Luscombe, N.M., and Gerstein, M. 2001. Protein family and fold occurrence in genomes: Power-law behaviour and evolutionary model. J. Mol. Biol. 313: 673-681.
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 673-681
-
-
Qian, J.1
Luscombe, N.M.2
Gerstein, M.3
-
21
-
-
0026100921
-
A workbench for multiple alignment construction and analysis
-
Schuler, G.D., Altschul, S.F., and Lipman, D.J. 1991. A workbench for multiple alignment construction and analysis. Proteins 9: 180-190.
-
(1991)
Proteins
, vol.9
, pp. 180-190
-
-
Schuler, G.D.1
Altschul, S.F.2
Lipman, D.J.3
-
22
-
-
0033793828
-
Biosynthesis of isoprenoids via mevalonate in Archaea: The lost pathway
-
Smit, A. and Mushegian, A. 2000. Biosynthesis of isoprenoids via mevalonate in Archaea: The lost pathway. Genome Res. 10: 1468-1484.
-
(2000)
Genome Res.
, vol.10
, pp. 1468-1484
-
-
Smit, A.1
Mushegian, A.2
-
23
-
-
0032082930
-
Phenylpropanoid biosynthesis and its regulation
-
Weisshaar, B. and Jenkins, G.I. 1998. Phenylpropanoid biosynthesis and its regulation. Curr. Opin. Plant Biol. 1: 251-257.
-
(1998)
Curr. Opin. Plant Biol.
, vol.1
, pp. 251-257
-
-
Weisshaar, B.1
Jenkins, G.I.2
-
24
-
-
0033008596
-
Distribution of protein folds in the three superkingdoms of life
-
Wolf, Y.I., Brenner, S.E., Bash, P.A., and Koonin, E.V. 1999. Distribution of protein folds in the three superkingdoms of life. Genome Res. 9: 17-26.
-
(1999)
Genome Res.
, vol.9
, pp. 17-26
-
-
Wolf, Y.I.1
Brenner, S.E.2
Bash, P.A.3
Koonin, E.V.4
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