Shifts in the dominant populations of ammonia-oxidizing β-subclass Proteobacteria along the eutrophic Schelde estuary

Aquatic Microbial Ecology

Volumn 23, Issue 3, 2001, Pages 225-236

  De Bie, Monique J M ^a   Speksnijder, Arjen G C L ^a   Kowalchuk, George A ^a   Schuurman, Tim ^a   Zwart, Gabriël ^a   Stephen, John R ^a   Diekmann, Onno E ^a   Laanbroek, Hendrikus J ^a  

^a NETHERLANDS INSTITUTE OF ECOLOGY NIOO KNAW   (Netherlands)

Author keywords

Ammonia oxidizing bacteria; DGGE; Estuaries; Nitrosomonas

Indexed keywords

BACTERIA (MICROORGANISMS); NITROSOMONADALES; NITROSOMONAS; NITROSOMONAS UREAE; NITROSOSPIRA; PROTEOBACTERIA;

EID: 0035961637     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame023225     Document Type: Article

References (50)

1. Nitrification in the Scheldt estuary (Belgium and the Netherlands)
2. Dynamics of nitrification and denitrification in root-oxygenated sediments and adaptation of ammonia-oxidizing bacteria to low-oxygen or anoxic habitats
3. Wastewater as a source of nitrifying bacteria in river systems: The case of the River Seine downstream from Paris
4. DCSE v2.54, an interactive tool for sequence alignment and secondary structure research
5. Nitrous oxide in the Schelde estuary: Production by nitrification and emission to the atmosphere
6. Isolation and direct complete nucleotide determination of entire genes. Characterization of gene coding for 16S ribosomal RNA
7. Direct ribosome isolation from soil to extract bacterial rRNA for community analysis
8. Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community
9. Application of molecular biological techniques to a seasonal study of ammonia oxidation in a eutrophic freshwater lake
10. Estuarine nitrite maxima amd nitrifying bacteria (Ems-Dollard estuary)
11. Amplification of 16S ribosomal RNA genes of autotrophic ammonia-oxidizing bacteria demonstrates the ubiquity of nitrosospiras in the environment
12. Comparitive analysis of nitrifying bacteria associated with freshwater and marine aquaria
13. Evolution of protein molecules
14. Deoxyribonucleic acid homologies among 96 strains of ammonia-oxidising bacteria
15. Analysis of ammonia-oxidizing bacteria of the β-subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments
16. Community analysis of ammonia-oxidising bacteria, in relation to oxygen-availability in soils and root-oxygenated sediments, usin PCR, DGGE and oligonucleotide probe hybridisation
17. Changes in the community structure of ammonia-oxidizing bacteria during secondary succession of calcereous grasslands
18. Activity of chemolithotrophic nitrifying bacteria under stress in natural soils
19. A new version of the RDP (ribosomal database project)
20. Molecular analysis of enrichment cultures of marine ammonia oxidisers
21. Nitrogen cycling and community structure of β-subgroup ammonia-oxidising bacteria within polluted, marine fish-farm sediments
22. Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria
23. Phylogenetic composition of bacterioplankton from two California estuaries compared by denaturating gel electrophoresis of 16S rDNA fragments
24. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
25. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16s rRNA
26. Estuarine nitrification: A naturally occurring fluidized bed reaction?
27. Phylogenetic differences between particle-associated and planktonic ammonia-oxidizing bacteria of the β-subdivision of the class Proteobacteria in the Northwestern Mediterranean Sea
28. Phylogenetic diversity within the genus Nitrosomonas
29. Autotrophic nitrification in bacteria
30. The ammonia monooxygenase structural gene amoA as a functional marker: Molecular fine scale analysis of natural ammonia oxidizing populations
31. Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor
32. Numbers, activities, and diversity of autotrophic ammonia-oxidizing bacteria in a freshwater, euthrophic lake sediment
33. Estimating estuarine residence times in the Westerschelde (The Netherlands) using a box model with fixed dispersion coefficients
34. Nitrogen dynamics in the Westerschelde estuary (SW Netherlands) estimated by means of the ecosystem model MOSES
35. Use of nitrifying activity measurements for describing the effect of salinity on nitrification in the Scheldt estuary
36. Recovery of a Nitrosomonas-like 16S rDNA sequence group from freshwater habitats
37. The ammonia-oxidizing nitrifying population of the River Elbe estuary
38. Molecular diversity of soil and marine 16s rRNA gene sequences related to β-subgroup ammonia-oxidizing bacteria
39. Analysis of β-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing
40. Phylogenetic relationships of activated sludge isolates of ammonia oxidizers with different sensitivities to ammonium sulfate
41. Distribution of sulfate-reducing bacteria in a stratified fjord (Mariagerfjord, Denmark) as evaluated by most-probable number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments
42. A qualitative evaluation of the published oligonucleotides specific for the 16S rRNA gene sequences of the ammonia-oxidizing bacteria
43. TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
44. Database on the structure of small ribosomal subunit RNA
45. Detection of ammonium oxidising bacteria in the beta-subclass of the class Proteobacteria in aquatic samples with the PCR
46. In situ analysis of nitrifying bacteria in sewage treatment plants
47. Oceanic distribution of ammonia oxidizing bacteria determined by immunofluorescence
48. Marine ammonia- and nitrite-oxidizon bacteria: Sereological diversity determined by immunofluorescence in culture and in the environment
49. Phylogenetic differentiation of two closely related Nitrosomonas spp. that inhabit different sediment environments in an oligotrophic freshwater lake
50. The Scheldt estuary