Complex co-substrate addition increases initial petroleum degradation rates during land treatment by altering bacterial community physiology

Remediation

Volumn 13, Issue 4, 2003, Pages 61-78

  Kaplan, Christopher W ^a   Clement, Brian G ^b   Hamrick, Alice ^c   Pease, Robert W ^d   Flint, Carl ^e   Cano, Raul J ^c   Kitts, Christopher L ^c  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b SCRIPPS RESEARCH   (United States)

^c CALIFORNIA POLYTECHNIC STATE UNIVERSITY   (United States)

^d BFJ Services Inc   (United States)

^e Ablestik   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 1642266680     PISSN: 10515658     EISSN: 15206831     Source Type: Journal    
DOI: 10.1002/rem.10084     Document Type: Article

References (26)

1. Abed, R. M. M., Safi, N. M. D., Köster, J., de Beer, K., El- Nahhal, Y., Rullkötter, J., et al. (2002). Microbial diversity of a heavily polluted microbial mat and its community changes following degradation of petroleum compounds. Applied Environmental Microbiology, 68, 1674–1683.
2. Admon, S., Green, M., & Avnimelech, Y. (2001). Biodegradation kinetics of hydrocarbons in soil during land treatment of oily sludge. Bioremediation Journal, 5, 193–209.
3. Al-Awadhi, N., Al-Daher, R., ElNavavy, A., & Balba, M. T. (1996). Bioremediation of oil-contaminated soil in Kuwait: Landfarming to remediate oil-contaminated soil. Journal of Soil Contamination, 5, 243–260.
4. Alexander, M. (2000). Aging, bioavailability, and overestimation of risk from environmental pollutants. Environmental Science and Technology, 34, 4259–4265.
5. Atlas, R. M., & Bartha, R. (1972). Degradation and mineralization of petroleum by two bacteria isolated from coastal wasters. Biotechnology Bioengineering, 14, 297–308.
6. Bending, G. D., Turner, M. K., & Jones, J. E. (2002). Interactions between crop residue and soil organic matter quality and the functional diversity of soil microbial communities. Soil Biology and Biochemistry, 34, 1073–1082.
7. Braker, G., Ayala-del-Rio, H. L., Devol, A. H., Fesefeldt, A., & Tiedje, J. M. (2001). Community structure of denitrifiers, bacteria, and archaea along redox gradients in Pacific Northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes. Applied and Environmental Microbiology, 67, 1893–1901.
8. Clement, B. G., Kehl, L. E., DeBord, K. L., & Kitts, C. L. (1998). Terminal restriction fragment patterns (TRFPs), a rapid, PCR-based method for the comparison of complex bacterial communities. Journal of Microbiological Methods, 31, 135–142.
9. Huesemann, M. H., & Truex, M. J. (1996). The role of oxygen diffusion in passive bioremediation of petroleum contaminated soils. Journal of Hazardous Materials, 51, 93–113.
10. Jett, B. D., Hatter, K. L., Huycke, M. M., & Gilmore, M. S. (1997). Simplified agar plate method for quantifying viable bacteria. Biotechniques, 23, 648–650.
11. Juck, D., Charles, T., Whyte, L. G., & Greer, C. W. (2000). Polyphasic microbial community analysis of petroleum hydrocarbon-contaminated soils from two northern Canadian communities. FEMS Microbiology Ecology, 33, 241–249.
12. Kaplan, C. W., Astaire, J. C., Sanders, M. E., Reddy, B. S., & Kitts, C. L. (2001). 16S ribosomal DNA terminal restriction fragment pattern analysis of bacterial communities in feces of rats fed Lactobacillus acidophilus NCFM. Applied and Environmental Microbiology, 67, 1935–1939.
13. Kerkhof, L., Santoro, M., & Garland. J. (2000). Response of soybean rhizosphere communities to human hygiene water addition as determined by community level physiological profiling (CLPP) and terminal restriction fragment length polymorphism (TRFLP) analysis. FEMS Microbiology Letters, 184, 95–101.
14. Kitts, C. L. (2001). Terminal restriction fragment patterns: A tool for comparing microbial communities and assessing community dynamics. Current Issues in Intestinal Microbiology, 2, 17–25.
15. Liu, W., Marsh, T. L., Cheng, H., & Forney, L. (1997). Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Applied and Environmental Microbiology, 63, 4516–4522.
16. MacNaughton, S. J., Stephen, J. R., Venosa, A. D., Davis, G. A., Chang, Y., & White, D. C. (1999). Microbial population changes during bioremeditaion of an experimental oil spill. Applied and Environmental Microbiology, 65, 3566–3574.
17. Marsh, T. L. (1999). Terminal restriction fragment length polymorphism (T-RFLP): An emerging method for characterizing diversity among homologous populations of amplification products. Current Opinion in Microbiology, 2, 323–327.
18. Mayr, C., Winding, A., & Hendriksen, N. B. (1999). Community level physiological profile of soil bacteria unaffected by extraction method. Journal of Microbiological Methods, 36, 29–33.
19. Mishra, S., Jyot, J., Kuhad, R. C., & Lal, B. (2001). Evaluation of inoculum addition to stimulate in situ bioremediation of oily-sludge-contaminated soil. Applied and Environmental Microbiology, 67, 1675–1681.
20. Moeseneder, M. M., Winter, C., Arrieta, J. M., & Herndl, G. J. (2001). Terminal-restriction fragment length polymorphism (T-RFLP) screening of a marine archaeal clone library to determine the different phylotypes. Journal of Microbiological Methods, 44, 159–172.
21. Morgan, P., & Watkinson, R. J. (1990). Assessment of the potential for in situ biotreatment of hydrocarbon-contaminated soils. Water Sci. Technol, 22, 63–68.
22. Sakano, Y., Pickering, K. D., Strom, P. F., & Kerkhof, L. J. (2002). Spatial distribution of total, ammonia-oxidizing, and denitrifying bacteria in biological wastewater treatment reactors for bioregenerative life support. Applied and Environmental Microbiology, 68, 2285–2293.
23. Salanitro, J. P., Dorn, P. B., Huesemann, M. H., Moore, K. O., Rhodes, I. A., Rice, L. M., et al. (1997). Crude oil hydrocarbon bioremediation and soil ecotoxicity assessment. Environmental Science and Technology, 31, 1769–1776.
24. Venosa, A. D., Suidan, M. T., Wrenn, B. A., Strohmeier, K. L., Haines, J. R., Eberhart, B. L., et al. (1996). Bioremediation of an experimental oil spill on the shoreline of Delaware Bay. Environmental Science and Technology, 30, 1764–1775.
25. Watanabe, K. (2001). Microorganisms relevant to bioremediation. Current Opinions in Biotechnology, 12, 237–241.
26. Wrenn, B. A., & Venosa, A. D. (1996). Selective enumeration of aromatic and aliphatic hydrocarbon degrading bacteria by a most-probable-number procedure. Canadian Journal of Microbiology, 42, 252–258.