Discovering transcriptional modules from motif, chlp-chip and microarray data

Proceedings of the Pacific Symposium on Biocomputing 2005, PSB 2005

Volumn , Issue , 2005, Pages 483-494

  De Bie, Tijl ^a   Monsieurs, Pteter ^a   Engelen, Kristof ^a   De Moor, Bart ^a   Cristianini, Nello ^b   Marchal, Kathleen ^a  

^a UNIVERSITY OF LEUVEN   (Belgium)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL DATA; DATA-SOURCES; DNA RECOGNITION; FULLY INTEGRATED; GENE EXPRESSION PROFILES; HETEROGENEOUS DATA SOURCES; MICROARRAY DATA; MICROARRAY EXPERIMENTS; TARGET GENES; TRANSCRIPTIONAL MODULES;

GENE EXPRESSION;

ITERATIVE METHODS;

FUNGAL PROTEIN;

ALGORITHM; ARTICLE; BIOLOGICAL MODEL; CELL CYCLE; CYTOLOGY; DNA MICROARRAY; GENETIC TRANSCRIPTION; GENETICS; REPRODUCIBILITY; RIBOSOME; SACCHAROMYCES CEREVISIAE;

ALGORITHMS; CELL CYCLE; FUNGAL PROTEINS; MODELS, GENETIC; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REPRODUCIBILITY OF RESULTS; RIBOSOMES; SACCHAROMYCES CEREVISIAE; TRANSCRIPTION, GENETIC;

EID: 15944386022     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (19)

1. R. Agrawal et al, Proceedings of the 1993 ACM SIGMOD International Conference on Management of Data, pp. 207-216 (1993).
2. Z. Bar-Joseph et al, Nature Biotechnology, 21(11): 1337-1342 (2003).
3. M.C. Costanzo et al, Nucleic Acids Research, 28(1): 73-76 (2000).
4. N. Friedman, Science, 303(5659): 799-805 (2004).
5. A. Hartemink et al, Proceedings of the Pacific Symposium on Biocomputing, 7: 437-449 (2002): 166-176 (2003).
6. M. Kellis et al, Nature, 423(6937): 241-254 (2003).
7. G. Lanckriet et al, Bioinformatics Advance Access, bth294 (2004).
8. M. Lapidot and Y. Pilpel, Nucleic Acids Research, 31(13): 3824-3828 (2003).
9. T.I. Lee et al, Science, 298(5594): 799-804 (2002).
10. X.S. Liu et al, Nature Biotechnology, 20(8): 835-839 (2002) U.K.
11. Marchal et al, Genome Biology, 5(2): R9 (2004).
12. H.W. Mewes et al, Nucleic Acids Research, 32 Database issue D41-D44 (2004).
13. N. Narai et al, Proceedings of the Pacific Symposium on Biocomputing, 9: 336- 347 (2004).
14. E. Segal et al, Bioinformatics, 19 (Suppl 1): 264-272 (2003).
15. E. Segal et al, Nature Genetics, 34(2).
16. P.T. Spellman et al, Molecular Biology of the Cell, 9: 3273-3297 (1998).
17. S. Tavazoie et al, Nature Genetics, 22(3):281-285 (1999).
18. G. Thijs et al, Journal of Computational Biology, 9(2): 447-464 (2002).
19. J.P. Vert and M. Kanehisa, Bioinformatics, 19: 238ii-234ii (2003).