Allopatric origins of sympatric brook charr populations: Colonization history and admixture

Molecular Ecology

Volumn 14, Issue 5, 2005, Pages 1497-1509

  Fraser, D J ^a,b   Bernatchez, L ^a  

^a UNIVERSITÉ LAVAL   (Canada)

^b NONE

Author keywords

Evolutionary history; Mitochondrial DNA; Postglacial dispersal and colonization; Secondary contact; Statistical phylogeography; Sympatric divergence

Indexed keywords

FRESH WATER; MICROSATELLITE DNA;

ANIMAL; ARTICLE; CANADA; CLUSTER ANALYSIS; COMPARATIVE STUDY; DEMOGRAPHY; GENE FREQUENCY; GENETIC POLYMORPHISM; GENETICS; GEOGRAPHY; POPULATION DYNAMICS; POPULATION GENETICS; TROUT;

ANIMALS; CLUSTER ANALYSIS; DEMOGRAPHY; FRESH WATER; GENE FREQUENCY; GENETICS, POPULATION; GEOGRAPHY; MICROSATELLITE REPEATS; POLYMORPHISM, GENETIC; POPULATION DYNAMICS; QUEBEC; TROUT;

FONTINALIS; PISCES; SALVELINUS FONTINALIS;

EID: 15944366055     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2005.02523.x     Document Type: Article

References (63)

1. Angers B, Bernatchez L (1998) Combined use of SMM and non-SMM methods to infer fine structure and evolutionary history of closely related brook charr (Salvelinus fontinalis, Salmonidae) populations from microsatellites. Molecular Biology and Evolution, 15, 143-159.
2. Behrmann-Godel J, Gerlach G, Eckmann R (2004) Postglacial colonization shows evidence for sympatric population splitting of Eurasian perch (Perca fluviatilis L.) in Lake Constance. Molecular Ecology, 13, 491-497.
3. Bell MA (2004) Twelve years of contemporary evolution in a three-spine stickleback population. Evolution, 58, 814-824.
4. Bernatchez L (2004) Ecological theory of adaptive radiation: an empirical assessment from coregonine fishes (Salmoniformes). In: Evolution Illuminated: Salmonids and their Relatives (eds Hendry AP, Stearns SC), pp. 175-207. Oxford University Press, New York.
5. Bernatchez L, Dodson JJ (1990) Allopatric origin of sympatric populations of whitefish (Coregonus clupeaformis) as revealed by mitochondrial DNA restriction analysis. Evolution, 44, 1263-1271.
6. Bernatchez L, Dodson JJ (1991) Phylogeographic structure in mitochondrial DNA of the lake whitefish (Coregonus clupeaformis), and its relation to Pleistocene glaciations. Evolution, 45, 1016-1035.
7. Bertorelle G, Excoffier L (1998) Inferring admixture proportions from molecular data. Molecular Biology and Evolution, 15, 1298-1311.
8. Bouchard A (1980) Late Quaternary geology, Temiscamie region, central Québec. Doctoral Thesis, McGill University, Montréal, Canada.
9. Burger CV, Scribner KT, Spearman WJ, Swanton CO, Campton DE (2000) Genetic contribution of three introduced life history forms of sockeye salmon to colonization of Frazer Lake, Alaska. Canadian Journal of Fisheries and Aquatic Sciences, 57, 2096-2111.
10. Burger CV, Spearman WJ, Cronin MA (1997) Genetic differentiation of sockeye salmon subpopulations from a geologically young Alaskan lake system. Transactions of the American Fisheries Society, 126, 926-938.
11. Carmack EC, Gray CBJ, Pahro CH, Daley RJ (1979) Importance of lake-river interaction on seasonal patterns in the general circulation of Kamloops Lake, British Columbia. Limnology and Oceanography, 24, 634-644.
12. Cavalli-Sforza LL, Edwards AWF (1967) Phylogenetic analysis: models and estimation procedures. Evolution, 32, 550-570.
13. Chakraborty R (1986) Gene admixture in human populations: models and predictions. Yearbook of Physical Anthropology, 29, 1-43.
14. Danzmann RG, Morgan RP, Jones MW, Bernatchez L, Isshen PE (1998) A major sextet of mitochondrial DNA phylogenetic assemblages in eastern North American brook trout (Salvelinus fontinalis): distribution and postglacial dispersal patterns. Canadian Journal of Zoology, 76, 1300-1318.
15. Denton GH, Hugues TJ (1981) The Last Great Ice Sheets. Wiley, Toronto, Canada.
16. Dupanloup I, Bertorelle G (2001) Inferring admixture proportions from molecular data: extension to any number of parental populations. Molecular Biology and Evolution, 18, 672-675.
17. Dupanloup I, Schneider S, Excoffier L (2002) A simulated annealing approach to define the genetic structure of populations. Molecular Ecology, 11, 2571-2581.
18. Dupanloup I, Bertorelle G, Chikhi L, Barbujani G (2004) Estimating the impact of prehistoric admixture on the genome of Europeans. Molecular Biology and Evolution, 21, 1361-1372.
19. Flick WA (1977) Some observations, age, growth, food habits and vulnerability of large brook trout (Salvelinus fontinalis) from four Canadian lakes. Naturaliste Canadienne, 104, 353-359.
20. Fraser DJ, Bernatchez L (2005) Adaptive migratory divergence among sympatric brook charr populations. Evolution, 59, in press.
21. Fraser DJ, Lippé C, Bernatchez L (2004) Consequences of unequal population size, asymmetric gene flow, and sex-biased dispersal on population structure in brook charr (Salvelinus fontinalis). Molecular Ecology, 13, 67-80.
22. Gislason D, Ferguson MM, Skulason S, Snorrason SS (1999) Rapid and coupled phenotypic and genetic divergence in Icelandic Arctic charr (Salvelinus alpinus). Canadian Journal of Fisheries and Aquatic Sciences, 56, 2229-2224.
23. Goldstein DB, Linares AR, Cavalli-Sforza LL, Feldman MW (1995) Genetic absolute dating based on microsatellites and the origin of modern humans. Proceedings of the National Academy of Science of the United States of America, 92, 6725-6727.
24. Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices, Version 2.9.3. Institut d'Écologie, Université de Lausanne, Switzerland.
25. Hardy OJ, Vekemans X (2002) SPAGEDI: a versatile computer program to analyze spatial genetic structure at the individual or population levels. Molecular Ecology Notes, 2, 618-620.
26. Hardy OJ, Charbonnel N, Freville H, Heuertz M (2003) Microsatellite allele sizes: a simple test to assess their significance on genetic differentiation. Genetics, 163, 1467-1482.
27. Harvey PH, Pagel MD (1991) The Comparative Method in Evolutionary Biology. Oxford University Press, Oxford.
28. Hendry AP, Taylor EB, McPhail JD (2002) Adaptive divergence and the balance between selection and gene flow: lake and stream stickleback in the Misty system. Evolution, 56, 1199-1216.
29. Hynes RA, Ferguson A, McCann MA (1996) Variation in mitochondrial DNA and postglacial colonization of northwestern Europe by brown trout. Journal of Fish Biology, 48, 54-67.
30. Kashi Y, Soller M (1999) Functional roles of microsatellites and minisatellites. In: Microsatellites: Evolution and Applications (eds Goldstein DB, Schlötterer C), pp. 10-23. Oxford University Press, Oxford.
31. Koskinen MT, Nilsson J, Veselov A, Potutkin AG, Ranta E, Primmer CR (2002) Microsatellite data resolve phylogeographic patterns in European grayling, Thymallus thymallus, Salmonidae. Heredity, 88, 391-401.
32. Langella O (2001) POPULATIONS 1.2.24. Population genetic structure (individual or population distances, phylogenetic trees). Available at http://www.pge.cnrs-gif.fr/bioinfo/populations/.
33. Langerhans RB, DeWitt TJ (2004) Shared and unique features of evolutionary diversification. American Naturalist, 164, 335-349.
34. Legendre P, Legendre V (1984) Postglacial dispersal of freshwater fishes in the Québec peninsula. Canadian Journal of Fisheries and Aquatic Sciences, 41, 1781-1802.
35. Losos JB, Jackman TR, Larson A, De Queiroz K, Rodriguez-Schettino L (1998) Contingency and determinism in replicated adaptive radiations of island lizards. Science, 279, 2115-2118.
36. Lu G, Bernatchez L (1999) Correlated trophic specialization and genetic divergence in sympatric lake whitefish ecotypes (Coregonus clupeaformis): support for the ecological speciation hypothesis. Evolution, 53, 1491-1505.
37. Lu G, Basley DJ, Bernatchez L (2001) Contrasting patterns of mitochondrial DNA and microsatellite introgressive hybridization between lineages of lake whitefish (Coregonus clupeaformis): relevance for speciation. Molecular Ecology, 10, 965-985.
38. McPhail JD (1993) Ecology and evolution of sympatric sticklebacks (Gasterosteus): origins of the species pairs. Canadian Journal of Zoology, 71, 515-523.
39. Olsen JB, Wenburg JK, Bentzen P (1996) Semiautomated multilocus genotyping of Pacific salmon (Oncorhynchus spp.) using microsatellites. Molecular Marine Biology and Biotechnology, 5, 259-272.
40. Østbye K, Naesje TF, Bernatchez L, Sandlund OT, Hindar K (2005) Morphological divergence and origin of sympatric populations of European whitefish (Coregonus lavaretus, L.). Journal of Evolutionary Biology, in press.
41. Page RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences, 12, 357-358.
42. Pigeon D, Chouinard A, Bernatchez L (1997) Multiple modes of speciation involved in the parallel evolution of sympatric morphotypes of lake whitefish (Coregonus clupeaformis, Salmonidae). Evolution, 51, 196-205.
43. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
44. Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
45. Robinson BW, Wilson DS (1994) Character displacement and release in fishes: a neglected literature. American Naturalist, 144, 596-627.
46. Rogers SM, Bernatchez L (2005) Integrating QTL mapping and genomic scans towards the characterization of candidate loci under parallel directional selection in the lake whitefish (Coregonus clupeaformis). Molecular Ecology, 14, 351, http://www.blackwell-synergy.com/links/doi/10.1111/j.1365-294X.2004.02396. x/full/.
47. Rogers SM, Gagnon V, Bernatchez L (2002) Genetically based phenotype association for swimming behavior in lake whitefish ecotypes (Coregonus clupeaformis Mitchill). Evolution, 56, 2322-2329.
48. Rundle H, Nagel L, Boughman J, Schluter D (2000) Natural selection and parallel speciation in sympatric sticklebacks. Science, 287, 306-308.
49. Saint-Laurent R, Legault M, Bernatchez L (2003) Divergent selection maintains differentiation despite high gene flow between sympatric rainbow smelt (Osmerus mordax, Mitchill). Molecular Ecology, 12, 315-330.
50. Schluter D (1996) Ecological speciation in postglacial fishes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 351, 807-814.
51. Schneider S, Roessli D, Excoffier L (2000) ARLEQUIN, Version 2.000: a software for population genetics data analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland.
52. Sheffield VC, Beck JS, Kwitek AE, Sanstrom DW, Stone EM (1993) The sensitivity of single-strand conformation polymorphism analysis for the detection of single base substitutions. Genomics, 16, 325-332.
53. Svärdson G (1961) Young sibling fish species in northwestern Europe. In: Vertebrate Speciation (ed. Blair WF), pp. 498-513. University of Texas Press, Austin.
54. Taylor EB (1999) Species pairs of north temperate freshwater fishes: taxonomy, evolution, and conservation. Reviews in Fish Biology and Fisheries, 9, 299-324.
55. Taylor EB, Bentzen P (1993) Evidence for multiple origins and sympatric divergence of trophic ecotypes of smelt Osmerus, in northeastern North America. Evolution, 47, 813-832.
56. Taylor EB, Foote CJ (1991) Critical swimming velocities of juvenile sockeye salmon and kokanee, the anadromous and non-anadromous forms of Oncorhynchus nerka (Walbaum). Journal of Fish Biology, 38, 407-419.
57. Taylor EB, McPhail JD (2000) Historical contingency and ecological determinism interact to prime speciation in sticklebacks, Gasterosteus. Proceedings of the Royal Society of London. Series B, Biological Sciences, 267, 2375-2384.
58. Taylor EB, Foote CJ, Wood CC (1996) Molecular genetic evidence for parallel life history evolution within a pacific salmon (sockeye salmon and kokanee, Oncorhynchus nerka). Evolution, 50, 401-416.
59. Tessier N, Bernatchez L (2000) A genetic assessment of single versus double origin landlocked Atlantic salmon (Salmo salar) from Lake Saint-John, Quebec, Canada. Canadian Journal of Fisheries and Aquatic Sciences, 57, 797-804.
60. Thompson CE, Taylor EB, McPhail JD (1997) Parallel evolution of lake-stream pairs of threespine stickleback (Gastersteus aculeatus) inferred from mitochondrial DNA variation. Evolution, 51, 1955-1965.
61. Travisano M, Mongold JA, Bennett AF, Lenski RE (1995) Experimental tests of the roles of adaptation, chance, and history of evolution. Science, 267, 87-90.
62. Turgeon J, Bernatchez L (2001) Mitochondrial DNA phylogeography of lake cisco (Coregonus artedi): evidence supporting extensive secondary contacts between two glacial races. Molecular Ecology, 10, 987-2001.
63. Wilson CC, Hebert PDN (1998) Phylogeography and postglacial dispersal of lake trout (Salvelinus namaycush) in North America. Canadian Journal of Fisheries and Aquatic Sciences, 55, 1010-1024.