-
1
-
-
0003880161
-
-
Garland Publishing Inc. New York
-
B. Alberts, D. Bray, J. Lewis, M. Raff, K. Roberts, and J.D. Watson Molecular biology of the cell 1994 Garland Publishing Inc. New York
-
(1994)
Molecular Biology of the Cell
-
-
Alberts, B.1
Bray, D.2
Lewis, J.3
Raff, M.4
Roberts, K.5
Watson, J.D.6
-
2
-
-
0035367064
-
Whole-genome expression analysis: Challenges beyond clustering
-
R.B. Altman, and S. Raychaudhuri Whole-genome expression analysis: Challenges beyond clustering Current Opinion in Structural Biology 11 3 2001 340 347
-
(2001)
Current Opinion in Structural Biology
, vol.11
, Issue.3
, pp. 340-347
-
-
Altman, R.B.1
Raychaudhuri, S.2
-
3
-
-
0030986188
-
The hardwiring of development: Organization and function of genomic regulatory systems
-
M.I. Arnone, and E.H. Davidson The hardwiring of development: Organization and function of genomic regulatory systems Development 124 10 1997 1851 1864
-
(1997)
Development
, vol.124
, Issue.10
, pp. 1851-1864
-
-
Arnone, M.I.1
Davidson, E.H.2
-
4
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The gene ontology consortium
-
M. Ashburner, C.A. Ball, J.A. Blake, D. Botstein, H. Butler, and J.M. Cherry Gene ontology: Tool for the unification of biology. The gene ontology consortium Nature Genetics 25 1 2000 25 29
-
(2000)
Nature Genetics
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
-
5
-
-
0037252704
-
The molecular biology database collection: 2003 update
-
A.D. Baxevanis The molecular biology database collection: 2003 update Nucleic Acids Research 31 1 2003 1 12
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 1-12
-
-
Baxevanis, A.D.1
-
6
-
-
0037212568
-
Understanding complex signaling networks through models and metaphors
-
U.S. Bhalla Understanding complex signaling networks through models and metaphors Progress in Biophysics and Molecular Biology 81 1 2003 45 65
-
(2003)
Progress in Biophysics and Molecular Biology
, vol.81
, Issue.1
, pp. 45-65
-
-
Bhalla, U.S.1
-
8
-
-
0036469065
-
Signal transduction and the control of gene expression
-
A.H. Brivanlou, and J.E. Darnell Jr. Signal transduction and the control of gene expression Science 295 5556 2002 813 818
-
(2002)
Science
, vol.295
, Issue.5556
, pp. 813-818
-
-
Brivanlou, A.H.1
Darnell Jr., J.E.2
-
9
-
-
0033150947
-
Regulatory elements and expression profiles
-
P. Bucher Regulatory elements and expression profiles Current Opinion in Structural Biology 9 3 1999 400 407
-
(1999)
Current Opinion in Structural Biology
, vol.9
, Issue.3
, pp. 400-407
-
-
Bucher, P.1
-
10
-
-
0035135420
-
Regulatory element detection using correlation with expression
-
H.J. Bussemaker, H. Li, and E.D. Siggia Regulatory element detection using correlation with expression Nature Genetics 27 2 2001 167 171
-
(2001)
Nature Genetics
, vol.27
, Issue.2
, pp. 167-171
-
-
Bussemaker, H.J.1
Li, H.2
Siggia, E.D.3
-
11
-
-
0037396730
-
The gene ontology annotation (GOA) project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro
-
E. Camon, M. Magrane, D. Barrell, D. Binns, W. Fleischmann, and P. Kersey The gene ontology annotation (GOA) project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro Genome Research 13 4 2003 662 672
-
(2003)
Genome Research
, vol.13
, Issue.4
, pp. 662-672
-
-
Camon, E.1
Magrane, M.2
Barrell, D.3
Binns, D.4
Fleischmann, W.5
Kersey, P.6
-
12
-
-
0033985570
-
Kinetic analysis of a molecular model of the budding yeast cell cycle
-
K.C. Chen, A. Csikasz-Nagy, B. Gyorffy, J. Val, B. Novak, and J.J. Tyson Kinetic analysis of a molecular model of the budding yeast cell cycle Molecular Biology of the Cell 11 1 2000 369 391
-
(2000)
Molecular Biology of the Cell
, vol.11
, Issue.1
, pp. 369-391
-
-
Chen, K.C.1
Csikasz-Nagy, A.2
Gyorffy, B.3
Val, J.4
Novak, B.5
Tyson, J.J.6
-
14
-
-
0032112293
-
A genome-wide transcriptional analysis of the mitotic cell cycle
-
R.J. Cho, M.J. Campbell, E.A. Winzeler, L. Steinmetz, A. Conway, and L. Wodicka A genome-wide transcriptional analysis of the mitotic cell cycle Molecular Cell 2 1 1998 65 73
-
(1998)
Molecular Cell
, vol.2
, Issue.1
, pp. 65-73
-
-
Cho, R.J.1
Campbell, M.J.2
Winzeler, E.A.3
Steinmetz, L.4
Conway, A.5
Wodicka, L.6
-
15
-
-
0036500834
-
Reverse engineering of biological complexity
-
M.E. Csete, and J.C. Doyle Reverse engineering of biological complexity Science 295 5560 2002 1664 1669
-
(2002)
Science
, vol.295
, Issue.5560
, pp. 1664-1669
-
-
Csete, M.E.1
Doyle, J.C.2
-
16
-
-
0033116788
-
Physical parameters estimation of the nonlinear continuous-time dynamics of a DC motor using Hartley modulating functions method
-
S. Daniel-Berhe, and H. Unbehauen Physical parameters estimation of the nonlinear continuous-time dynamics of a DC motor using Hartley modulating functions method Journal of the Franklin Institute 336 1999 481 501
-
(1999)
Journal of the Franklin Institute
, vol.336
, pp. 481-501
-
-
Daniel-Berhe, S.1
Unbehauen, H.2
-
17
-
-
0036683181
-
Linking the genes: Inferring quantitative gene networks from microarray data
-
A. de la Fuente, P. Brazhnik, and P. Mendes Linking the genes: Inferring quantitative gene networks from microarray data Trends in Genetics 18 8 2002 395 398
-
(2002)
Trends in Genetics
, vol.18
, Issue.8
, pp. 395-398
-
-
De La Fuente, A.1
Brazhnik, P.2
Mendes, P.3
-
18
-
-
0002947156
-
DAISY: A database for identification of systems
-
B. De Moor, P. De Gersem, B. De Schutter, and W. Favoreel DAISY: A database for identification of systems Journal A 38 3 1997 4 5
-
(1997)
Journal a
, vol.38
, Issue.3
, pp. 4-5
-
-
De Moor, B.1
De Gersem, P.2
De Schutter, B.3
Favoreel, W.4
-
19
-
-
0035012429
-
Rap1p requires Gcr1p and Gcr2p homodimers to activate ribosomal protein and glycolytic genes, respectively
-
S.J. Deminoff, and G.M. Santangelo Rap1p requires Gcr1p and Gcr2p homodimers to activate ribosomal protein and glycolytic genes, respectively Genetics 158 1 2001 133 143
-
(2001)
Genetics
, vol.158
, Issue.1
, pp. 133-143
-
-
Deminoff, S.J.1
Santangelo, G.M.2
-
20
-
-
0033736476
-
Genetic network inference: From co-expression clustering to reverse engineering
-
P. D'Haeseleer, S. Liang, and R. Somogyi Genetic network inference: From co-expression clustering to reverse engineering Bioinformatics 16 8 2000 707 726
-
(2000)
Bioinformatics
, vol.16
, Issue.8
, pp. 707-726
-
-
D'Haeseleer, P.1
Liang, S.2
Somogyi, R.3
-
22
-
-
0035028716
-
Overlapping and distinct roles of the duplicated yeast transcription factors Ace2p and Swi5p
-
M.T. Doolin, A.L. Johnson, L.H. Johnston, and G. Butler Overlapping and distinct roles of the duplicated yeast transcription factors Ace2p and Swi5p Molecular Microbiology 40 2 2001 422 432
-
(2001)
Molecular Microbiology
, vol.40
, Issue.2
, pp. 422-432
-
-
Doolin, M.T.1
Johnson, A.L.2
Johnston, L.H.3
Butler, G.4
-
23
-
-
0036207548
-
Inference from clustering with application to gene-expression microarrays
-
E.R. Dougherty, J. Barrera, M. Brun, S. Kim, R.M. Cesar, and Y. Chen Inference from clustering with application to gene-expression microarrays Journal of Computational Biology 9 1 2002 105 126
-
(2002)
Journal of Computational Biology
, vol.9
, Issue.1
, pp. 105-126
-
-
Dougherty, E.R.1
Barrera, J.2
Brun, M.3
Kim, S.4
Cesar, R.M.5
Chen, Y.6
-
24
-
-
0038444122
-
Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells
-
R. Elkon, C. Linhart, R. Sharan, R. Shamir, and Y. Shiloh Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells Genome Research 13 5 2003 773 780
-
(2003)
Genome Research
, vol.13
, Issue.5
, pp. 773-780
-
-
Elkon, R.1
Linhart, C.2
Sharan, R.3
Shamir, R.4
Shiloh, Y.5
-
25
-
-
0036677451
-
Global analysis of stress-regulated mRNA turnover by using cDNA arrays
-
J. Fan, X. Yang, W. Wang, W.H. Wood, K.G. Becker, and M. Gorospe Global analysis of stress-regulated mRNA turnover by using cDNA arrays Proceedings of the National Academy of Sciences of the United States of America 99 16 2002 10611 10616
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.16
, pp. 10611-10616
-
-
Fan, J.1
Yang, X.2
Wang, W.3
Wood, W.H.4
Becker, K.G.5
Gorospe, M.6
-
27
-
-
0038048325
-
Inferring genetic networks and identifying compound mode of action via expression profiling
-
T.S. Gardner, D. di Bernardo, D. Lorenz, and J.J. Collins Inferring genetic networks and identifying compound mode of action via expression profiling Science 301 5629 2003 102 105
-
(2003)
Science
, vol.301
, Issue.5629
, pp. 102-105
-
-
Gardner, T.S.1
Di Bernardo, D.2
Lorenz, D.3
Collins, J.J.4
-
28
-
-
0024456475
-
The role of mRNA and protein stability in gene expression
-
J.L. Hargrove, and F.H. Schmidt The role of mRNA and protein stability in gene expression FASEB Journal 3 12 1989 2360 2370
-
(1989)
FASEB Journal
, vol.3
, Issue.12
, pp. 2360-2370
-
-
Hargrove, J.L.1
Schmidt, F.H.2
-
31
-
-
0032567081
-
Dissecting the regulatory circuitry of a eukaryotic genome
-
F.C. Holstege, E.G. Jennings, J.J. Wyrick, T.I. Lee, C.J. Hengartner, and M.R. Green Dissecting the regulatory circuitry of a eukaryotic genome Cell 95 5 1998 717 728
-
(1998)
Cell
, vol.95
, Issue.5
, pp. 717-728
-
-
Holstege, F.C.1
Jennings, E.G.2
Wyrick, J.J.3
Lee, T.I.4
Hengartner, C.J.5
Green, M.R.6
-
32
-
-
0035852785
-
Dynamic modeling of gene expression data
-
N.S. Holter, A. Maritan, M. Cieplak, N.V. Fedoroff, and J.R. Banavar Dynamic modeling of gene expression data Proceedings of the National Academy of Sciences of the United States of America 98 4 2001 1693 1698
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.4
, pp. 1693-1698
-
-
Holter, N.S.1
Maritan, A.2
Cieplak, M.3
Fedoroff, N.V.4
Banavar, J.R.5
-
33
-
-
0035805255
-
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
-
T. Ideker, V. Thorsson, J.A. Ranish, R. Christmas, J. Buhler, and J.K. Eng Integrated genomic and proteomic analyses of a systematically perturbed metabolic network Science 292 5518 2001 929 934
-
(2001)
Science
, vol.292
, Issue.5518
, pp. 929-934
-
-
Ideker, T.1
Thorsson, V.2
Ranish, J.A.3
Christmas, R.4
Buhler, J.5
Eng, J.K.6
-
34
-
-
0035156258
-
Assessing clusters and motifs from gene expression data
-
L.M. Jakt, L. Cao, K.S. Cheah, and D.K. Smith Assessing clusters and motifs from gene expression data Genome Research 11 1 2001 112 123
-
(2001)
Genome Research
, vol.11
, Issue.1
, pp. 112-123
-
-
Jakt, L.M.1
Cao, L.2
Cheah, K.S.3
Smith, D.K.4
-
35
-
-
0037001630
-
A framework for integrating the songbird brain
-
E.D. Jarvis, V.A. Smith, K. Wada, M.V. Rivas, M. McElroy, and T.V. Smulders A framework for integrating the songbird brain Journal of Comparative Physiology A: Neuroethology, Sensory, Neural, and Behavioral Physiology 188 11/12 2002 961 980
-
(2002)
Journal of Comparative Physiology A: Neuroethology, Sensory, Neural, and Behavioral Physiology
, vol.188
, Issue.11-12
, pp. 961-980
-
-
Jarvis, E.D.1
Smith, V.A.2
Wada, K.3
Rivas, M.V.4
McElroy, M.5
Smulders, T.V.6
-
36
-
-
0035799707
-
Lethality and centrality in protein networks
-
H. Jeong, S.P. Mason, A.L. Barabasi, and Z.N. Oltvai Lethality and centrality in protein networks Nature 411 6833 2001 41 42
-
(2001)
Nature
, vol.411
, Issue.6833
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabasi, A.L.3
Oltvai, Z.N.4
-
37
-
-
0141742369
-
Modeling of corticosteroid pharmacogenomics in rat liver using gene microarrays
-
J.Y. Jin, R.R. Almon, D.C. DuBois, and W.J. Jusko Modeling of corticosteroid pharmacogenomics in rat liver using gene microarrays Journal of Pharmacology and Experimental Therapeutics 307 1 2003 93 109
-
(2003)
Journal of Pharmacology and Experimental Therapeutics
, vol.307
, Issue.1
, pp. 93-109
-
-
Jin, J.Y.1
Almon, R.R.2
Dubois, D.C.3
Jusko, W.J.4
-
38
-
-
0041853625
-
MATCH: A tool for searching transcription factor binding sites in DNA sequences
-
A.E. Kel, E. Gossling, I. Reuter, E. Cheremushkin, O.V. Kel-Margoulis, and E. Wingender MATCH: A tool for searching transcription factor binding sites in DNA sequences Nucleic Acids Research 31 13 2003 3576 3579
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3576-3579
-
-
Kel, A.E.1
Gossling, E.2
Reuter, I.3
Cheremushkin, E.4
Kel-Margoulis, O.V.5
Wingender, E.6
-
39
-
-
0036789922
-
Untangling the wires: A strategy to trace functional interactions in signaling and gene networks
-
B.N. Kholodenko, A. Kiyatkin, F.J. Bruggeman, E. Sontag, H.V. Westerhoff, and J.B. Hoek Untangling the wires: A strategy to trace functional interactions in signaling and gene networks Proceedings of the National Academy of Sciences of the United States of America 99 20 2002 12841 12846
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.20
, pp. 12841-12846
-
-
Kholodenko, B.N.1
Kiyatkin, A.2
Bruggeman, F.J.3
Sontag, E.4
Westerhoff, H.V.5
Hoek, J.B.6
-
40
-
-
0343442520
-
Forkhead transcription factors, Fkh1p and Fkh2p, collaborate with Mcm1p to control transcription required for M-phase
-
R. Kumar, D.M. Reynolds, A. Shevchenko, A. Shevchenko, S.D. Goldstone, and S. Dalton Forkhead transcription factors, Fkh1p and Fkh2p, collaborate with Mcm1p to control transcription required for M-phase Current Biology 10 15 2000 896 906
-
(2000)
Current Biology
, vol.10
, Issue.15
, pp. 896-906
-
-
Kumar, R.1
Reynolds, D.M.2
Shevchenko, A.3
Shevchenko, A.4
Goldstone, S.D.5
Dalton, S.6
-
41
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
T.I. Lee, N.J. Rinaldi, F. Robert, D.T. Odom, Z. Bar-Joseph, and G.K. Gerber Transcriptional regulatory networks in Saccharomyces cerevisiae Science 298 5594 2002 799 804
-
(2002)
Science
, vol.298
, Issue.5594
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
-
42
-
-
0035228215
-
BioProspector: Discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes
-
X. Liu, D.L. Brutlag, and J.S. Liu BioProspector: Discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes Proceedings of the Pacific Symposium on Biocomputing 4 2001 127 138
-
(2001)
Proceedings of the Pacific Symposium on Biocomputing
, vol.4
, pp. 127-138
-
-
Liu, X.1
Brutlag, D.L.2
Liu, J.S.3
-
43
-
-
0037208166
-
TRANSFAC: Transcriptional regulation, from patterns to profiles
-
V. Matys, E. Fricke, R. Geffers, E. Gossling, M. Haubrock, and R. Hehl TRANSFAC: Transcriptional regulation, from patterns to profiles Nucleic Acids Research 31 1 2003 374 378
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 374-378
-
-
Matys, V.1
Fricke, E.2
Geffers, R.3
Gossling, E.4
Haubrock, M.5
Hehl, R.6
-
44
-
-
0036574916
-
Statistical issues with microarrays: Processing and analysis
-
R. Nadon, and J. Shoemaker Statistical issues with microarrays: Processing and analysis Trends in Genetics 18 5 2002
-
(2002)
Trends in Genetics
, vol.18
, Issue.5
-
-
Nadon, R.1
Shoemaker, J.2
-
45
-
-
0036901518
-
Modeling of signaling networks
-
S.R. Neves, and R. Iyengar Modeling of signaling networks Bioessays 24 12 2002 1110 1117
-
(2002)
Bioessays
, vol.24
, Issue.12
, pp. 1110-1117
-
-
Neves, S.R.1
Iyengar, R.2
-
46
-
-
0033518256
-
Synexpression groups in eukaryotes
-
C. Niehrs, and N. Pollet Synexpression groups in eukaryotes Nature 402 6761 1999 483 487
-
(1999)
Nature
, vol.402
, Issue.6761
, pp. 483-487
-
-
Niehrs, C.1
Pollet, N.2
-
48
-
-
0029542327
-
Identification of a class of nonlinear continuous time systems using Hartley modulating functions
-
A. Patra, and H. Unbehauen Identification of a class of nonlinear continuous time systems using Hartley modulating functions International Journal of Control 62 6 1995 1431 1451
-
(1995)
International Journal of Control
, vol.62
, Issue.6
, pp. 1431-1451
-
-
Patra, A.1
Unbehauen, H.2
-
49
-
-
0028971143
-
MatInd and MatInspector: New fast and versatile tools for detection of consensus matches in nucleotide sequence data
-
K. Quandt, K. Frech, H. Karas, E. Wingender, and T. Werner MatInd and MatInspector: New fast and versatile tools for detection of consensus matches in nucleotide sequence data Nucleic Acids Research 23 23 1995 4878 4884
-
(1995)
Nucleic Acids Research
, vol.23
, Issue.23
, pp. 4878-4884
-
-
Quandt, K.1
Frech, K.2
Karas, H.3
Wingender, E.4
Werner, T.5
-
50
-
-
0036021823
-
Fifth-generation model for corticosteroid pharmacodynamics: Application to steady-state receptor down-regulation and enzyme induction patterns during seven-day continuous infusion of methylprednisolone in rats
-
R. Ramakrishnan, D.C. DuBois, R.R. Almon, N.A. Pyszczynski, and W.J. Jusko Fifth-generation model for corticosteroid pharmacodynamics: Application to steady-state receptor down-regulation and enzyme induction patterns during seven-day continuous infusion of methylprednisolone in rats Journal of Pharmacokinetics and Pharmacodynamics 29 1 2002 1 24
-
(2002)
Journal of Pharmacokinetics and Pharmacodynamics
, vol.29
, Issue.1
, pp. 1-24
-
-
Ramakrishnan, R.1
Dubois, D.C.2
Almon, R.R.3
Pyszczynski, N.A.4
Jusko, W.J.5
-
51
-
-
0037199968
-
Hierarchical organization of modularity in metabolic networks
-
E. Ravasz, A.L. Somera, D.A. Mongru, Z.N. Oltvai, and A.L. Barabasi Hierarchical organization of modularity in metabolic networks Science 297 5586 2002 1551 1555
-
(2002)
Science
, vol.297
, Issue.5586
, pp. 1551-1555
-
-
Ravasz, E.1
Somera, A.L.2
Mongru, D.A.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
52
-
-
0031787969
-
Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
-
F.P. Roth, J.D. Hughes, P.W. Estep, and G.M. Church Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation Nature Biotechnology 16 10 1998 939 945
-
(1998)
Nature Biotechnology
, vol.16
, Issue.10
, pp. 939-945
-
-
Roth, F.P.1
Hughes, J.D.2
Estep, P.W.3
Church, G.M.4
-
53
-
-
0030003064
-
Msn2p, a zinc finger DNA-binding protein, is the transcriptional activator of the multistress response in Saccharomyces cerevisiae
-
A.P. Schmitt, and K. McEntee Msn2p, a zinc finger DNA-binding protein, is the transcriptional activator of the multistress response in Saccharomyces cerevisiae Proceedings of the National Academy of Sciences of the United States of America 93 12 1996 5777 5782
-
(1996)
Proceedings of the National Academy of Sciences of the United States of America
, vol.93
, Issue.12
, pp. 5777-5782
-
-
Schmitt, A.P.1
McEntee, K.2
-
54
-
-
0346605836
-
Statistical challenges in functional genomics
-
P. Sebastiani, E. Gussoni, I.S. Kohane, and M.F. Ramoni Statistical challenges in functional genomics Statistical Science 18 1 2003 33 70
-
(2003)
Statistical Science
, vol.18
, Issue.1
, pp. 33-70
-
-
Sebastiani, P.1
Gussoni, E.2
Kohane, I.S.3
Ramoni, M.F.4
-
55
-
-
0037315564
-
Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation
-
D.W. Selinger, R.M. Saxena, K.J. Cheung, G.M. Church, and C. Rosenow Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation Genome Research 13 2 2003 216 223
-
(2003)
Genome Research
, vol.13
, Issue.2
, pp. 216-223
-
-
Selinger, D.W.1
Saxena, R.M.2
Cheung, K.J.3
Church, G.M.4
Rosenow, C.5
-
56
-
-
0034062083
-
Analysis of large-scale gene expression data
-
G. Sherlock Analysis of large-scale gene expression data Current Opinion in Immunology 12 2 2000 201 205
-
(2000)
Current Opinion in Immunology
, vol.12
, Issue.2
, pp. 201-205
-
-
Sherlock, G.1
-
58
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
P.T. Spellman, G. Sherlock, M.Q. Zhang, V.R. Iyer, K. Anders, and M.B. Eisen Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization Molecular Biology of the Cell 9 12 1998 3273 3297
-
(1998)
Molecular Biology of the Cell
, vol.9
, Issue.12
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
-
59
-
-
0033028596
-
Systematic determination of genetic network architecture
-
S. Tavazoie, J.D. Hughes, M.J. Campbell, R.J. Cho, and G.M. Church Systematic determination of genetic network architecture Nature Genetics 22 1999 281 285
-
(1999)
Nature Genetics
, vol.22
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.D.2
Campbell, M.J.3
Cho, R.J.4
Church, G.M.5
-
60
-
-
0034636161
-
Characterization of the DNA-binding domains from the yeast cell-cycle transcription factors Mbp1 and Swi4
-
I.A. Taylor, P.B. McIntosh, P. Pala, M.K. Treiber, S. Howell, and A.N. Lane Characterization of the DNA-binding domains from the yeast cell-cycle transcription factors Mbp1 and Swi4 Biochemistry 39 14 2000 3943 3954
-
(2000)
Biochemistry
, vol.39
, Issue.14
, pp. 3943-3954
-
-
Taylor, I.A.1
McIntosh, P.B.2
Pala, P.3
Treiber, M.K.4
Howell, S.5
Lane, A.N.6
-
61
-
-
0037687416
-
Reverse engineering gene networks: Integrating genetic perturbations with dynamical modeling
-
J. Tegner, M.K. Yeung, J. Hasty, and J.J. Collins Reverse engineering gene networks: Integrating genetic perturbations with dynamical modeling Proceedings of the National Academy of Sciences of the United States of America 100 10 2003 5944 5949
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.10
, pp. 5944-5949
-
-
Tegner, J.1
Yeung, M.K.2
Hasty, J.3
Collins, J.J.4
-
62
-
-
0142074896
-
PAINT: A promoter analysis and interaction network generation tool for genetic regulatory network identification
-
R. Vadigepalli, P. Chakravarthula, D.E. Zak, J.S. Schwaber, and G.E. Gonye PAINT: A promoter analysis and interaction network generation tool for genetic regulatory network identification Omics 7 3 2003 235 252
-
(2003)
Omics
, vol.7
, Issue.3
, pp. 235-252
-
-
Vadigepalli, R.1
Chakravarthula, P.2
Zak, D.E.3
Schwaber, J.S.4
Gonye, G.E.5
-
65
-
-
0037197892
-
Precision and functional specificity in mRNA decay
-
Y. Wang, C.L. Liu, J.D. Storey, R.J. Tibshirani, D. Herschlag, and P.O. Brown Precision and functional specificity in mRNA decay Proceedings of the National Academy of Sciences of the United States of America 99 9 2002 5860 5865
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.9
, pp. 5860-5865
-
-
Wang, Y.1
Liu, C.L.2
Storey, J.D.3
Tibshirani, R.J.4
Herschlag, D.5
Brown, P.O.6
-
68
-
-
0041523923
-
Decay rates of human mRNAs: Correlation with functional characteristics and sequence attributes
-
E. Yang, E. Van Nimwegen, M. Zavolan, N. Rajewsky, M. Schroeder, and M. Magnasco Decay rates of human mRNAs: Correlation with functional characteristics and sequence attributes Genome Research 13 8 2003 1863 1872
-
(2003)
Genome Research
, vol.13
, Issue.8
, pp. 1863-1872
-
-
Yang, E.1
Van Nimwegen, E.2
Zavolan, M.3
Rajewsky, N.4
Schroeder, M.5
Magnasco, M.6
-
70
-
-
5644270128
-
Evolutionary design of genetic circuits and cell-cell communications
-
Y. Yokobayashi, C.H. Collins, J.R. Leadbetter, R. Weiss, and F.H. Arnold Evolutionary design of genetic circuits and cell-cell communications Advances in Complex Systems 6 2003 37 45
-
(2003)
Advances in Complex Systems
, vol.6
, pp. 37-45
-
-
Yokobayashi, Y.1
Collins, C.H.2
Leadbetter, J.R.3
Weiss, R.4
Arnold, F.H.5
-
72
-
-
0242490789
-
Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks
-
D.E. Zak, G.E. Gonye, J.S. Schwaber, and F.J. Doyle III Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks Genome Research 13 11 2003 2396 2405
-
(2003)
Genome Research
, vol.13
, Issue.11
, pp. 2396-2405
-
-
Zak, D.E.1
Gonye, G.E.2
Schwaber, J.S.3
Doyle III, F.J.4
-
73
-
-
0348141727
-
Continuous-time identification of gene expression models
-
D.E. Zak, R.K. Pearson, R. Vadigepalli, G.E. Gonye, J.S. Schwaber, and F.J. Doyle III Continuous-time identification of gene expression models Omics 7 4 2003 373 386
-
(2003)
Omics
, vol.7
, Issue.4
, pp. 373-386
-
-
Zak, D.E.1
Pearson, R.K.2
Vadigepalli, R.3
Gonye, G.E.4
Schwaber, J.S.5
Doyle III, F.J.6
-
74
-
-
15744375449
-
-
Manuscript in preparation.
-
Zak, D. E., Vadigepalli, R., Pearson, R. K., Schwaber, J. S., Gonye, G. E., & Ogunnaike, B. A. (2004). Empirical reference distributions for regulatory element significance. Manuscript in preparation.
-
(2004)
Empirical Reference Distributions for Regulatory Element Significance
-
-
Zak, D.E.1
Vadigepalli, R.2
Pearson, R.K.3
Schwaber, J.S.4
Gonye, G.E.5
Ogunnaike, B.A.6
-
75
-
-
0032861774
-
SCPD: A promoter database of the yeast Saccharomyces cerevisiae
-
J. Zhu, and M.Q. Zhang SCPD: A promoter database of the yeast Saccharomyces cerevisiae Bioinformatics 15 7/8 1999 607 611
-
(1999)
Bioinformatics
, vol.15
, Issue.7-8
, pp. 607-611
-
-
Zhu, J.1
Zhang, M.Q.2
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