-
1
-
-
0033613221
-
A quantitative analysis of the kinetics of the G(2) DNA damage checkpoint system
-
Aguda B.D. A quantitative analysis of the kinetics of the G(2) DNA damage checkpoint system. Proc. Natl. Acad. Sci. USA. 96:1999;11352-11357.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 11352-11357
-
-
Aguda, B.D.1
-
2
-
-
0031879114
-
Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells
-
Arkin A., Ross J., McAdams H.H. Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. Genetics. 149:1998;1633-1648.
-
(1998)
Genetics
, vol.149
, pp. 1633-1648
-
-
Arkin, A.1
Ross, J.2
McAdams, H.H.3
-
3
-
-
0035171884
-
BIND - The biomolecular interaction network database
-
Bader G.D., Donaldson I., Wolting C., Ouellette B.F., Pawson T., Hogue C.W. BIND - the biomolecular interaction network database. Nucleic Acids Res. 29:2001;242-245.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 242-245
-
-
Bader, G.D.1
Donaldson, I.2
Wolting, C.3
Ouellette, B.F.4
Pawson, T.5
Hogue, C.W.6
-
4
-
-
0032555238
-
Homogeneous and spatio-temporal chaos in biochemical reactions with feedback inhibition
-
Baier G., Sahle S. Homogeneous and spatio-temporal chaos in biochemical reactions with feedback inhibition. J. Theor. Biol. 193:1998;233-242.
-
(1998)
J. Theor. Biol.
, vol.193
, pp. 233-242
-
-
Baier, G.1
Sahle, S.2
-
5
-
-
0034352177
-
Strategies for the physiome project
-
Bassingthwaighte J.B. Strategies for the physiome project. Ann. Biomed. Eng. 28:2000;1043-1058.
-
(2000)
Ann. Biomed. Eng.
, vol.28
, pp. 1043-1058
-
-
Bassingthwaighte, J.B.1
-
6
-
-
0035859082
-
Interaction with the NMDA receptor locks CaMKII in an active conformation
-
Bayer K.U., De Koninck P., Leonard A.S., Hell J.W., Schulman H. Interaction with the NMDA receptor locks CaMKII in an active conformation. Nature. 411:2001;801-805.
-
(2001)
Nature
, vol.411
, pp. 801-805
-
-
Bayer, K.U.1
De Koninck, P.2
Leonard, A.S.3
Hell, J.W.4
Schulman, H.5
-
8
-
-
0036307271
-
The chemical organization of signaling interactions
-
Bhalla U.S. The chemical organization of signaling interactions. Bioinformatics. 18:2002;855-863.
-
(2002)
Bioinformatics
, vol.18
, pp. 855-863
-
-
Bhalla, U.S.1
-
9
-
-
0036655823
-
Temporal pattern decoding by synaptic signaling pathways
-
Bhalla U.S. Temporal pattern decoding by synaptic signaling pathways. J. Comput. Neurosci. 13:2002;49-62.
-
(2002)
J. Comput. Neurosci.
, vol.13
, pp. 49-62
-
-
Bhalla, U.S.1
-
10
-
-
0035997011
-
Mechanisms for temporal tuning and filtering by postsynaptic signaling pathways
-
Bhalla U.S. Mechanisms for temporal tuning and filtering by postsynaptic signaling pathways. Biophys. J. 83:2002;740-752.
-
(2002)
Biophys. J.
, vol.83
, pp. 740-752
-
-
Bhalla, U.S.1
-
11
-
-
0033555859
-
Emergent properties of networks of biological signaling pathways
-
Bhalla U.S., Iyengar R. Emergent properties of networks of biological signaling pathways. Science. 283:1999;381-387.
-
(1999)
Science
, vol.283
, pp. 381-387
-
-
Bhalla, U.S.1
Iyengar, R.2
-
12
-
-
0035236836
-
Analysis of biological signalling networks
-
Bhalla U.S., Iyengar R.I. Analysis of biological signalling networks. Novart. Fdn. Symp. 239:2001;4-13.
-
(2001)
Novart. Fdn. Symp.
, vol.239
, pp. 4-13
-
-
Bhalla, U.S.1
Iyengar, R.I.2
-
13
-
-
0037047611
-
MAP kinase phosphatase as a locus of flexibility in a mitogen-activated protein kinase signaling network
-
Bhalla U.S., Ram P.T., Iyengar R. MAP kinase phosphatase as a locus of flexibility in a mitogen-activated protein kinase signaling network. Science. 297:2002;1018-1023.
-
(2002)
Science
, vol.297
, pp. 1018-1023
-
-
Bhalla, U.S.1
Ram, P.T.2
Iyengar, R.3
-
14
-
-
0027476024
-
A synaptic model of memory: Long-term potentiation in the hippocampus
-
Bliss T.V.P., Collingridge G.L. A synaptic model of memory. long-term potentiation in the hippocampus Nature. 361:1993;31-39.
-
(1993)
Nature
, vol.361
, pp. 31-39
-
-
Bliss, T.V.P.1
Collingridge, G.L.2
-
15
-
-
0025276049
-
Intracellular signalling as a parallel distributed process
-
Bray D. Intracellular signalling as a parallel distributed process. J. Theor. Biol. 143:1990;215-231.
-
(1990)
J. Theor. Biol.
, vol.143
, pp. 215-231
-
-
Bray, D.1
-
16
-
-
0029037739
-
Protein molecules as computational elements in living cells
-
Bray D. Protein molecules as computational elements in living cells. Nature. 376:1995;307-312.
-
(1995)
Nature
, vol.376
, pp. 307-312
-
-
Bray, D.1
-
18
-
-
0035282334
-
Mammalian MAP kinase signalling cascades
-
Chang L., Karin M. Mammalian MAP kinase signalling cascades. Nature. 410:2001;37-40.
-
(2001)
Nature
, vol.410
, pp. 37-40
-
-
Chang, L.1
Karin, M.2
-
19
-
-
35848958631
-
Signal transduction pathways and the modification of chromatin structure
-
Davie J.R., Spencer V.A. Signal transduction pathways and the modification of chromatin structure. Prog. Nucleic Acid Res. Mol. Biol. 65:2001;299-340.
-
(2001)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.65
, pp. 299-340
-
-
Davie, J.R.1
Spencer, V.A.2
-
20
-
-
0032939061
-
Interpretation of phenotype in genetically engineered mice
-
Doetschman T. Interpretation of phenotype in genetically engineered mice. Lab. Anim. Sci. 49:1999;137-143.
-
(1999)
Lab. Anim. Sci.
, vol.49
, pp. 137-143
-
-
Doetschman, T.1
-
21
-
-
0035905782
-
Modelling cellular behaviour
-
Endy D., Brent R. Modelling cellular behaviour. Nature. 409:2001;391-395.
-
(2001)
Nature
, vol.409
, pp. 391-395
-
-
Endy, D.1
Brent, R.2
-
22
-
-
0011924251
-
Simulating, analyzing, and animating dynamical systems: A guide to XPPAUT for researchers and students
-
SIAM, Philadelphia, PA
-
Ermentrout, B., 2002. Simulating, analyzing, and animating dynamical systems: A guide to XPPAUT for researchers and students. In: Software, Environments and Tools, Vol. 14. SIAM, Philadelphia, PA.
-
(2002)
Software, Environments and Tools
, vol.14
-
-
Ermentrout, B.1
-
23
-
-
0015609281
-
The logical analysis of continuous, non-linear biochemical control networks
-
Glass L., Kauffman S.A. The logical analysis of continuous, non-linear biochemical control networks. J. Theor. Biol. 39:1973;103-129.
-
(1973)
J. Theor. Biol.
, vol.39
, pp. 103-129
-
-
Glass, L.1
Kauffman, S.A.2
-
24
-
-
0035950105
-
Morphogen gradient interpretation
-
Gurdon J.B., Bourillot P.Y. Morphogen gradient interpretation. Nature. 413:2001;797-803.
-
(2001)
Nature
, vol.413
, pp. 797-803
-
-
Gurdon, J.B.1
Bourillot, P.Y.2
-
25
-
-
0036468368
-
Rabs grab motors: Defining the connections between Rab GTPases and motor proteins
-
Hammer J.A.R., Wu X.S. Rabs grab motors. defining the connections between Rab GTPases and motor proteins Curr. Opin. Cell. Biol. 14:2002;69-75.
-
(2002)
Curr. Opin. Cell. Biol.
, vol.14
, pp. 69-75
-
-
Hammer, J.A.R.1
Wu, X.S.2
-
27
-
-
0032736462
-
Roles of postsynaptic density-95/synapse-associated protein 90 and its interacting proteins in the organization of synapses
-
Hata Y., Takai Y. Roles of postsynaptic density-95/synapse-associated protein 90 and its interacting proteins in the organization of synapses. Cell. Mol. Life Sci. 56:1999;461-472.
-
(1999)
Cell. Mol. Life Sci.
, vol.56
, pp. 461-472
-
-
Hata, Y.1
Takai, Y.2
-
30
-
-
0034116677
-
Models of calmodulin trapping and CaM kinase II activation in a dendritic spine
-
Holmes W.R. Models of calmodulin trapping and CaM kinase II activation in a dendritic spine. J. Comput. Neurosci. 8:2000;65-85.
-
(2000)
J. Comput. Neurosci.
, vol.8
, pp. 65-85
-
-
Holmes, W.R.1
-
32
-
-
0011923475
-
The ERATO systems biology workbench: An integrated environment for multiscale and multitheoretic simulations in systems biology
-
Kitano, H. (Ed.). MIT Press, Cambridge, MA
-
Hucka, M., Sauro, H., Finney, A., Bolouri, H., Doyle, J., Kitano, H., 2000. The ERATO systems biology workbench: An integrated environment for multiscale and multitheoretic simulations in systems biology. In: Kitano, H. (Ed.), First International Conference on Systems Biology. MIT Press, Cambridge, MA.
-
(2000)
First International Conference on Systems Biology
-
-
Hucka, M.1
Sauro, H.2
Finney, A.3
Bolouri, H.4
Doyle, J.5
Kitano, H.6
-
33
-
-
0033531331
-
Cell behaviour as a dynamic attractor in the intracellular signaling system
-
James A., Swann K., Recce M. Cell behaviour as a dynamic attractor in the intracellular signaling system. J. Theor. Biol. 196:1999;269-288.
-
(1999)
J. Theor. Biol.
, vol.196
, pp. 269-288
-
-
James, A.1
Swann, K.2
Recce, M.3
-
36
-
-
0032776303
-
Molecular interaction map of the mammalian cell cycle control and DNA repair systems
-
Kohn K.W. Molecular interaction map of the mammalian cell cycle control and DNA repair systems. Mol. Cell. Biol. 10:1999;2703-2734.
-
(1999)
Mol. Cell. Biol.
, vol.10
, pp. 2703-2734
-
-
Kohn, K.W.1
-
38
-
-
0026505707
-
A quantitative account of the activation steps involved in phototransduction in amphibian photoreceptors
-
Lamb T.D., Pugh E.N. Jr. A quantitative account of the activation steps involved in phototransduction in amphibian photoreceptors. J. Physiol. London. 449:1992;719-758.
-
(1992)
J. Physiol. London
, vol.449
, pp. 719-758
-
-
Lamb, T.D.1
Pugh E.N., Jr.2
-
39
-
-
0034676451
-
The Eps8 protein coordinates EGF receptor signalling through Rac and trafficking through Rab5
-
Lanzetti L., Rybin V., Malabarba M.G., Christoforidis S., Scita G., Zerial M., Di Fiore P.P. The Eps8 protein coordinates EGF receptor signalling through Rac and trafficking through Rab5. Nature. 408:2000;374-377.
-
(2000)
Nature
, vol.408
, pp. 374-377
-
-
Lanzetti, L.1
Rybin, V.2
Malabarba, M.G.3
Christoforidis, S.4
Scita, G.5
Zerial, M.6
Di Fiore, P.P.7
-
40
-
-
0034625005
-
Cell signaling pathways as control modules: Complexity for simplicity?
-
Lauffenburger D.A. Cell signaling pathways as control modules. complexity for simplicity? Proc. Natl. Acad. Sci. USA. 97:2000;5031-5033.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 5031-5033
-
-
Lauffenburger, D.A.1
-
41
-
-
0034961694
-
STOCHSIM: Modelling of stochastic biomolecular processes
-
Le Novere N., Shimizu T.S. STOCHSIM. modelling of stochastic biomolecular processes Bioinformatics. 17:2001;575-576.
-
(2001)
Bioinformatics
, vol.17
, pp. 575-576
-
-
Le Novere, N.1
Shimizu, T.S.2
-
42
-
-
0035478586
-
The Virtual Cell: A software environment for computational cell biology
-
Loew L.M., Schaff J.C. The Virtual Cell. a software environment for computational cell biology Trends Biotechnol. 19:2001;401-406.
-
(2001)
Trends Biotechnol.
, vol.19
, pp. 401-406
-
-
Loew, L.M.1
Schaff, J.C.2
-
43
-
-
0029028963
-
Circuit simulation of genetic networks
-
McAdams H.H., Shapiro L. Circuit simulation of genetic networks. Science. 269:1995;650-656.
-
(1995)
Science
, vol.269
, pp. 650-656
-
-
McAdams, H.H.1
Shapiro, L.2
-
45
-
-
0003444646
-
-
MIT Press, Cambridge, MA
-
Rumelhart, D.E., McClelland, J.L., 1986. Parallel Distributed Processing: Explorations in the Microstructure of Cognition, Vol. 1: Foundations. MIT Press, Cambridge, MA.
-
(1986)
Parallel Distributed Processing: Explorations in the Microstructure of Cognition, Vol. 1: Foundations
-
-
Rumelhart, D.E.1
McClelland, J.L.2
-
46
-
-
0035928464
-
A logical analysis of the Drosophila gap-gene system
-
Sanchez L., Thieffry D. A logical analysis of the Drosophila gap-gene system. J. Theor. Biol. 211:2001;115-141.
-
(2001)
J. Theor. Biol.
, vol.211
, pp. 115-141
-
-
Sanchez, L.1
Thieffry, D.2
-
47
-
-
0035177003
-
The TRANSPATH signal transduction database: A knowledge base on signal transduction networks
-
Schacherer F., Choi C., Gotze U., Krull M., Pistor S., Wingender E. The TRANSPATH signal transduction database. a knowledge base on signal transduction networks Bioinformatics. 17:2001;1053-1057.
-
(2001)
Bioinformatics
, vol.17
, pp. 1053-1057
-
-
Schacherer, F.1
Choi, C.2
Gotze, U.3
Krull, M.4
Pistor, S.5
Wingender, E.6
-
48
-
-
0036165418
-
BRENDA: A resource for enzyme data and metabolic information
-
Schomburg I., Chang A., Hofmann O., Ebeling C., Ehrentreich F., Schomburg D. BRENDA. a resource for enzyme data and metabolic information Trends Biochem. Sci. 27:2002;54-56.
-
(2002)
Trends Biochem. Sci.
, vol.27
, pp. 54-56
-
-
Schomburg, I.1
Chang, A.2
Hofmann, O.3
Ebeling, C.4
Ehrentreich, F.5
Schomburg, D.6
-
49
-
-
9044244532
-
The metabolic pathway collection from EMP: The enzymes and metabolic pathways database
-
Selkov E., Basmanova S., Gaasterland T., Goryanin I., Gretchkin Y., Maltsev N., Nenashev V., Overbeek R., Panyushkina E., Pronevitch L., Selkov E.J., Yunus I. The metabolic pathway collection from EMP. the enzymes and metabolic pathways database Nucleic Acids Res. 24:1996;26-28.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 26-28
-
-
Selkov, E.1
Basmanova, S.2
Gaasterland, T.3
Goryanin, I.4
Gretchkin, Y.5
Maltsev, N.6
Nenashev, V.7
Overbeek, R.8
Panyushkina, E.9
Pronevitch, L.10
Selkov, E.J.11
Yunus, I.12
-
50
-
-
0033778277
-
Molecular model of a lattice of signalling proteins involved in bacterial chemotaxis
-
Shimizu T.S., Le Novere N., Levin M.D., Beavil A.J., Sutton B.J., Bray D. Molecular model of a lattice of signalling proteins involved in bacterial chemotaxis. Nat. Cell. Biol. 2:2000;792-796.
-
(2000)
Nat. Cell. Biol.
, vol.2
, pp. 792-796
-
-
Shimizu, T.S.1
Le Novere, N.2
Levin, M.D.3
Beavil, A.J.4
Sutton, B.J.5
Bray, D.6
-
51
-
-
85057660342
-
Monte Carlo methods for simulating realistic synaptic microphysiology using MCell
-
E. De Schutter. Boca Raton, FL: CRC Press
-
Stiles J.R., Bartol T.M. Monte Carlo methods for simulating realistic synaptic microphysiology using MCell. De Schutter E. Computational Neuroscience: Realistic Modeling for Experimentalists. 2000;87-128 CRC Press, Boca Raton, FL.
-
(2000)
Computational Neuroscience: Realistic Modeling for Experimentalists
, pp. 87-128
-
-
Stiles, J.R.1
Bartol, T.M.2
-
52
-
-
0030070012
-
Simplification and analysis of models of calcium dynamics based on IP3-sensitive calcium channel kinetics
-
Tang Y., Stephenson J.L., Othmer H.G. Simplification and analysis of models of calcium dynamics based on IP3-sensitive calcium channel kinetics. Biophys. J. 70:1996;246-263.
-
(1996)
Biophys. J.
, vol.70
, pp. 246-263
-
-
Tang, Y.1
Stephenson, J.L.2
Othmer, H.G.3
-
53
-
-
0011923329
-
Developing a logical tool to analyse biological regulatory networks
-
R. Paton. London: Chapman & Hall
-
Thomas R., Thieffry D. Developing a logical tool to analyse biological regulatory networks. Paton R. Computing with Biological Metaphors. 1994;26-39 Chapman & Hall, London.
-
(1994)
Computing with Biological Metaphors
, pp. 26-39
-
-
Thomas, R.1
Thieffry, D.2
-
54
-
-
0033031386
-
E-CELL: Software environment for whole-cell simulation
-
Tomita M., Hashimoto K., Takahashi Y.K., Shimizu T.S., Matsuzaki Y., Miyoshi F., Saito K., Tanida S., Yugi K., Venter J.C., Hutchison C.A. E-CELL. software environment for whole-cell simulation Bioinformatics. 15:1999;72-84.
-
(1999)
Bioinformatics
, vol.15
, pp. 72-84
-
-
Tomita, M.1
Hashimoto, K.2
Takahashi, Y.K.3
Shimizu, T.S.4
Matsuzaki, Y.5
Miyoshi, F.6
Saito, K.7
Tanida, S.8
Yugi, K.9
Venter, J.C.10
Hutchison, C.A.11
-
55
-
-
0035279936
-
Towards an understanding of complex protein networks
-
Tucker C.L., Gera J.F., Uetz P. Towards an understanding of complex protein networks. Trends Cell. Biol. 11:2001;102-106.
-
(2001)
Trends Cell. Biol.
, vol.11
, pp. 102-106
-
-
Tucker, C.L.1
Gera, J.F.2
Uetz, P.3
-
57
-
-
0033515888
-
Complexity in biological signaling systems
-
Weng G., Bhalla U.S., Iyengar R. Complexity in biological signaling systems. Science. 284:1999;92-96.
-
(1999)
Science
, vol.284
, pp. 92-96
-
-
Weng, G.1
Bhalla, U.S.2
Iyengar, R.3
-
58
-
-
0036088133
-
DIP: The database of interacting proteins. A research tool for studying cellular networks of protein interactions
-
Xenarios I., Salwinski L., Duan X.J., Higney P., Kim S., Eisenberg D. DIP. the database of interacting proteins. A research tool for studying cellular networks of protein interactions Nucleic Acids Res. 30:2002;303-305.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 303-305
-
-
Xenarios, I.1
Salwinski, L.2
Duan, X.J.3
Higney, P.4
Kim, S.5
Eisenberg, D.6
|