Partitioning of bacterial communities between travertine depositional facies at Mammoth Hot Springs, Yellowstone National Park, U.S.A

Canadian Journal of Earth Sciences

Volumn 40, Issue 11, 2003, Pages 1531-1548

  Fouke, Bruce W ^a   Bonheyo, George T ^a   Sanzenbacher, Beth ^a   Frias Lopez, Jorge ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; EARTH SCIENCES; ECOSYSTEMS; GENES; HOT SPRINGS; PRECIPITATION (METEOROLOGY); RNA;

BACTERIAL COMMUNITIES; GENE SEQUENCES;

BACTERIOLOGY;

BACTERIUM; DEPOSITIONAL SEQUENCE; FACIES; MICROBIAL COMMUNITY; PARTITIONING; THERMAL SPRING; TRAVERTINE;

MAMMOTH HOT SPRINGS; NORTH AMERICA; UNITED STATES; WYOMING; YELLOWSTONE NATIONAL PARK;

EID: 1542380531     PISSN: 00084077     EISSN: None     Source Type: Journal    
DOI: 10.1139/e03-067     Document Type: Article

References (51)

1. Allen, E.T., and Day, A.L. 1935. Hot Springs of the Yellowstone National Park. Carnegie Institution of Washington, Publication 466.
2. Altschul, S.F., Gish, W., Miller, W., Meyers, E.W., and Lipman, D.J. 1990. Basic local allignment search tool. Journal of Molecular Biology, 59: 143-169.
3. Bargar, K.E. 1978. Geology and thermal history of Mammoth Hot Springs, Yellowstone National Park, Wyoming. United States Geological Survey Bulletin, 1444, 54 p.
4. Beveridge, T. 1988. Role of cellular design in bacterial metal accumulation and mineralization. Annual Review of Microbiology, 43: 147-171.
5. Blank, C.E., Cady, S.L., and Pace, N.R. 2002. Microbial composition of near-boiling silica-depositing thermal springs throughout Yellowstone National Park. Applied and Environmental Microbiology, 68: 5123-5135.
6. Blatt, H., Middleton, G.V., and Murray, R.C. 1980. Origin of sedimentary rocks. Prentice-Hall, Englewood Cliffs, N.J.
7. Boggs, S.J. 2002. Principles of sedimentology and stratigraphy. 3rd ed. Prentice Hall, Upper Saddle River, N.J.
8. Bonheyo, G.T., Fouke, B.W., Sanzebacher, B., and Salyers, A.A. 2000. By land, sea, or air? microbial transport at the Mammoth Hot Springs complex. GSA Abstracts with Programs, 7(.7): A-492.
9. Brock, T.D., Madigan, M.T., Martinko, J.M., and Parker, J. 2001. Biology of microorganisms. Prentice Hall, Upper Saddle River, N.J.
10. Farmer, J.D. 2000. Hydrothermal systems: doorways to early biosphere evolution. GSA Today, 10: 1-8.
11. Farmer, J.D., and Des Marais, D.J. 1994. Biological versus inorganic processes in stromatolite morphogenesis: observations from mineralizing sedimentary systems. In Microbial mats: structure, development, and environmental significance. Edited by L.J. Stal and P. Caumette. NATO ASI Series in Ecological Sciences. Springer-Verlag, Berlin and Heidelberg, Germany, pp. 61-68.
12. Ferris, M.J., Muyzer, G., and Ward, D.M. 1996. Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Applied and Environmental Microbiology, 62: 340-346.
13. Flügel, E. 1982. Microfacies analysis of limestones. Springer-Verlag, Berlin, Germany.
14. Ford, T.D., and Pedley, H.M. 1996. A review of tufa and travertine deposits of the world. Earth-Science Reviews, 41: 117-175.
15. Fouke, B.W. 2001. Depositional facies and aqueous-solid geochemistry of travertine-depositing hot springs (Angel Terrace, Mammoth Hot Springs, Yellowstone National Park, USA). Journal of Sedimentary Research, 71: 497-500.
16. Fouke, B.W., Farmer, J.D., Des Marais, D.J., Pratt, L., Sturchio, N.C., Burns, P.C., and Discipulo, M.K. 2000. Depositional facies and aqueous-solid geochemistry of travertine-depositing hot springs (Angel Terrace, Mammoth Hot Springs, Yellowstone National Park, USA). Journal of Sedimentary Research, 70: 265-285.
17. Friedman, I. 1970. Some investigations of the deposition of travertine from hot springs: I. The isotope chemistry of a travertine-depositing spring. Geochimica et Cosmochimica Acta, 34: 1303-1315.
18. Goebel, B.M., and Stackebrandt, E. 1994. Cultural and phylogenetic analysis of mixed microbial populations found in natural and commercial bioleaching environments. Applied and Environmental Microbiology, 60: 1614-21.
19. Hahn, M.W., Moore, E.R.B., and Hofle, M.G. 1999. Bacterial filament formation, a defense mechanism against flagellate grazing, is growth rate controlled in bacteria of different phyla. Applied and Environmental Microbiology, 65: 25-35.
20. Hillis, D.M., Moritz, C., and Mable, B.K. 1996. Molecular systematics. Sinauer Associates, Sunderland, Mass.
21. Huber, J.A., Butterfield, D.A., and Baross, J.A. 2002. Temporal changes in archael diversity and chemistry in a mid-ocean ridge seafloor habitat. Applied and Environmental Microbiology, 68: 1585-1594.
22. Hugenholtz, P., Pitulle, C., Hershberger, K.L., and Pace, N.R. 1998a. Novel division level diversity in a Yellowstone hot spring. Journal of Bacteriology, 180: 366-376.
23. Hugenholtz, P., Pitulle, C., Hershberger, K.L., and Pace, N.R. 1998b. Novel division level bacterial diversity in a Yellowstone hot spring. Journal of Bacteriology, 180: 366-376.
24. Hughes, J.B., Hellman, J.J., Ricketts, T.H., and Bohannon, B.J.M. 2001. Mini-Review-Counting the Uncountable: Statistical approaches to estimating microbial diversity. Applied and Environmental Microbiology, 67: 4399-4406.
25. Hurst, C.J., Crawford, R.L., Knudsen, G.R., McInernery, M.J., and Stetzenbach, L.D. 2002. Manual of environmental microbiology. ASM Press. Washington, D.C.
26. Maidik, B.L., Olsen, G.J., Larsen, N., Overbeek, R., Mccaughey, M.J., and Woese, C.R. 1997. The RDP (Ribosomal Database Project). Nucleic Acids, 25: 109-110.
27. Martin, A.P. 2002. Phylogenetic approaches for describing and comparing the diversity of microbial communities: Applied and Environmental Microbiology, 68:. 3673-3682.
28. Messing, J. 1983. New M13 cloning vectors. Methods in Enzymology, 101: 20-78.
29. Newman, D.K., Beveridge, T.J., and Morell, F.M.M. 1997. Precipitation of arsenic trisulfide by Desulfotomacuum auripigmentum. Applied and Environmental Microbiology, 63: 2022-2028.
30. Pace, N.R. 1997. A molecular view of microbial diversity and the biospbere. Science (Washington, D.C.), 276: 734-740.
31. Pentecost, A. 1990. The formation of travertine shrubs: Mammoth Hot Springs, Wyoming. Geological Magazine, 127: 159-168.
32. Pentecost, A., and Viles, H.A. 1994. A review and reassessment of travertine classification. Geographie Physique et Quaternaire, 48: 305-314.
33. Reading, H.G. 1996. Sedimentary environments: processes, facies and stratigraphy. Blackwell Science, London, England.
34. Reysenbach, A.L., Setzinger, S., Kirshtein, J., and Mclaughlin, E. 1999. Molecular constraints on a high-temperature evolution of early life. Biological Bulletin, 196: 367-372.
35. Reysenbach, A.L., Ehringer, M., and Hershberger, K.L. 2000a. Microbial diversity at 83 °C in Calcite Springs, Yellowstone National Park: another environment where Aquificales and "Korarchaeota" coexist. Extremophiles, 4: 61-67.
36. Reysenbach, A.L., Banta, A., Boone, D., Cary, S., and Luther, G. 2000b. Microbial essentials at hydrothermal vents. Nature (London). 404: 835.
37. Sambrook, J., Fritsch, E.F., and Maniatis, T. 1989. Molecular cloning. A laboratory manual, Cold Spring Harbor Laboratory Press.
38. Skirnisdottir, S., Hreggvidsson, G.O., Hjorleifsdottir, S., Marteinsson, V.T., Petursdottir, S.K., Holst, O., and Kristjansson, J.K. 2000. Influence of sulfide and temperature on species composition and community structure of hot spring microbial mats. Applied and Environmental Microbiology, 66: 2835-2841.
39. Stahl, D.A., Lane, D.J., Olsen, G.J., and Pace, N.R. 1985. Characterization of a Yellowstone hot spring microbial community. Applied Environmental Microbiology, 49: 1379-1384.
40. Studier, W.F., and Dunn, J.J. 1983. Complete nucleotide sequence of bacteriophage T7 DNA and the location of T7 genetic elements. Journal of Molecular Biology, 166: 477-535.
41. Suzuki, M., Nakagawa, Y., Harayama, S., and Yamamoto, S. 2001. Phylogenetic analysis and taxonoimic study of marine Cytophaga-like bacteria. Journal of Systematic Evolutionary Microbiology, 5: 1639-1652.
42. Takacs, C.D., Ehringer, M., Favre, R., Cermola, M., Eggertson, G., Palsdottir, A., and Reysenbach, A.L. 2002. Phylogenetic chracaterization of the blue green filamentous bacterial community from an Icelandic geothermal spring. FEMS Microbiology and Ecology, 35: 123-128.
43. Vasconcelos, C., and Mckenzie, J.A. 1997. Microbial Meditation of Modern Dolomite Precipitation and Diagenesis Under Anoxic Conditions (Lagoa Vermelha, Rio De Janero, Brazil). Journal of Sedimentary Research, 67: 378-390.
44. Vieira, J., and Messing, J. 1982. The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene (Amsterdam), 19: 259-268.
45. Walker, R.G., and James, N.P. 1992. Facies Models: response to sea level change. GeoText 1, Geological Association of Canada.
46. Ward, D.M., Ferris, M.J., Nold, S.C., and Bateson, M.M. 1998. A natural view of microbial biodiversity within hot spring cyanobacterial mat communities. Microbiology and Moelcular Biology Reviews, 62: 1353-1370.
47. Whitman, W.B. 1998. Prokaryotes: the unseen majority. Proceedings of the National Academy of Science, 95: 6578-6583.
48. Wilmotte, A., Van der Auwera, G., and DeWachter, R. 1993. Structure of the 16S ribosomal RNA of the theromphilic cyanobacterium Chlorogloeopsis HTF (Mastigocladus laminosus HTF) strain PCC7518, and phylogenetic analysis. FEBS Letters, 317: 96-100,
49. Wilson, J.L. 1975. Carbonate facies in geologic history. Springer-Verlag, New York.
50. Woese, C.R. 1987. Bacterial evolution. Microbiology Reviews, 51: 221-271.
51. Zak, E., Norling, B., Maitra, R., Huang, F., Anderson, B., and Pakrasi, H. 2001. The initial steps of biogenesis of cyanobacterial photosystems occur in plasma membranes. Proceeding of the National Academies of Science, 98: 13 443-13 448.