-
1
-
-
0034764754
-
Condensed complexes and the calorimetry of cholesterol-phospholipid bilayers
-
Anderson, T. G., and H. M. McConnell. 2001. Condensed complexes and the calorimetry of cholesterol-phospholipid bilayers. Biophys. J. 81: 2774-2785.
-
(2001)
Biophys. J.
, vol.81
, pp. 2774-2785
-
-
Anderson, T.G.1
McConnell, H.M.2
-
2
-
-
0029776466
-
H-bond stability in the tRNA anticodon hairpin: 3 ns of multiple molecular dynamics simulations
-
Auffinger, P., and E. Westhof. 1996. H-bond stability in the tRNA anticodon hairpin: 3 ns of multiple molecular dynamics simulations. Biophys. J. 71:940-954.
-
(1996)
Biophys. J.
, vol.71
, pp. 940-954
-
-
Auffinger, P.1
Westhof, E.2
-
3
-
-
0030582683
-
α-O⋯O=C hydrogen bonds in a collagen triple helix
-
α-O⋯O=C hydrogen bonds in a collagen triple helix. J. Mol. Biol. 264:734-742.
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 734-742
-
-
Bella, J.1
Berman, H.M.2
-
4
-
-
0029633168
-
Gromacs: A message-passing parallel molecular dynamics implementation
-
Berendsen, H., D. van der Spoel, and R. van Drunen. 1995. Gromacs: a message-passing parallel molecular dynamics implementation. Comput. Phys. Commun. 91:43-56.
-
(1995)
Comput. Phys. Commun.
, vol.91
, pp. 43-56
-
-
Berendsen, H.1
Van Der Spoel, D.2
Van Drunen, R.3
-
5
-
-
0029959814
-
Inter-strand C-H⋯O hydrogen bonds stabilizing four-stranded intercalated molecules: Stereoelectronic effects of 04′ in cytosine-rich DNA
-
Berger, I., M. Egli, and A. Rich. 1996. Inter-strand C-H⋯O hydrogen bonds stabilizing four-stranded intercalated molecules: stereoelectronic effects of 04′ in cytosine-rich DNA. Proc. Natl. Acad. Sci. USA. 93:12116-12121.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 12116-12121
-
-
Berger, I.1
Egli, M.2
Rich, A.3
-
6
-
-
0030999097
-
Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature
-
Berger, O., O. Edholm, and F. Jahnig. 1997. Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature. Biophys. J. 72: 2002-2013.
-
(1997)
Biophys. J.
, vol.72
, pp. 2002-2013
-
-
Berger, O.1
Edholm, O.2
Jahnig, F.3
-
7
-
-
0037168311
-
Molecular dynamics simulations of sodium dodecyl sulfate micelle in water: The behavior of water
-
Bruce, C., S. Senapati, M. Berkowitz, L. Perera, and M. Forbes. 2002. Molecular dynamics simulations of sodium dodecyl sulfate micelle in water: the behavior of water. J. Phys. Chem. B. 106:10902-10907.
-
(2002)
J. Phys. Chem. B
, vol.106
, pp. 10902-10907
-
-
Bruce, C.1
Senapati, S.2
Berkowitz, M.3
Perera, L.4
Forbes, M.5
-
8
-
-
0036787706
-
Cholesterol-induced modifications in lipid bilayers: A simulation study
-
Chiu, S. W., E. Jakobsson, R. J. Mashl, and H. L. Scott. 2002. Cholesterol-induced modifications in lipid bilayers: a simulation study. Biophys. J. 83:1842-1853.
-
(2002)
Biophys. J.
, vol.83
, pp. 1842-1853
-
-
Chiu, S.W.1
Jakobsson, E.2
Mashl, R.J.3
Scott, H.L.4
-
9
-
-
0028978764
-
The occurrence of C-H⋯O hydrogen bonds in proteins
-
Derewenda, Z. S., L. Lee, and U. Derewenda. 1995. The occurrence of C-H⋯O hydrogen bonds in proteins. J. Mol. Biol. 252:248-262.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 248-262
-
-
Derewenda, Z.S.1
Lee, L.2
Derewenda, U.3
-
10
-
-
0007116617
-
The C-H⋯O hydrogen bond in crystals: What is it?
-
Desiraju, G. R. 1991. The C-H⋯O hydrogen bond in crystals: what is it? Acc. Chem. Res. 24:290-296.
-
(1991)
Acc. Chem. Res.
, vol.24
, pp. 290-296
-
-
Desiraju, G.R.1
-
11
-
-
0035575575
-
Shrinking patches and slippery rafts: Scales of domains in the plasma membrane
-
Edidin, M. 2001. Shrinking patches and slippery rafts: scales of domains in the plasma membrane. Trends Cell Biol. 11:492-496.
-
(2001)
Trends Cell Biol.
, vol.11
, pp. 492-496
-
-
Edidin, M.1
-
12
-
-
0028938599
-
Stereoelectronic effects of deoxyribose 04′ on DNA conformation
-
Egli, M., and R. V. Gessner. 1995. Stereoelectronic effects of deoxyribose 04′ on DNA conformation. Proc. Natl. Acad. Sci. USA. 92:180-184.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 180-184
-
-
Egli, M.1
Gessner, R.V.2
-
13
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essmann, U., L. Perera, M. L. Berkowitz, T. Darden, H. Lee, and L. G. Pedersen. 1995. A smooth particle mesh Ewald method. J. Chem. Phys. 103:8577-8593.
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
14
-
-
11744367106
-
Molecular dynamics simulation of aqueous mixtures: Methanol, acetone, and ammonia
-
Ferrario, M., M. Haughney, and I. McDonald. 1990. Molecular dynamics simulation of aqueous mixtures: methanol, acetone, and ammonia. J. Chem. Phys. 93:5156-5166.
-
(1990)
J. Chem. Phys.
, vol.93
, pp. 5156-5166
-
-
Ferrario, M.1
Haughney, M.2
McDonald, I.3
-
15
-
-
0033552238
-
Fundamental properties of the CH⋯O interaction: Is it a true hydrogen bond?
-
Gu, Y., T. Kar, and S. Scheiner. 1999. Fundamental properties of the CH⋯O interaction: is it a true hydrogen bond? J. Am. Chem. Soc. 121:9411-9422.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 9411-9422
-
-
Gu, Y.1
Kar, T.2
Scheiner, S.3
-
16
-
-
0000388705
-
LINCS: A linear constraint solver for molecular simulations
-
Hess, B., H. Bekker, H. J. C. Berendsen, and J. G. E. M. Fraaige. 1997. LINCS: A linear constraint solver for molecular simulations. J. Comput. Chem. 18:1463-1472.
-
(1997)
J. Comput. Chem.
, vol.18
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaige, J.G.E.M.4
-
17
-
-
0037381939
-
Molecular dynamics simulations of phospholipid bilayers with cholesterol
-
Hofsäß, C., E. Lindahl, and O. Edholm. 2003. Molecular dynamics simulations of phospholipid bilayers with cholesterol. Biophys. J. 84: 2192-2206.
-
(2003)
Biophys. J.
, vol.84
, pp. 2192-2206
-
-
Hofsäß, C.1
Lindahl, E.2
Edholm, O.3
-
18
-
-
0035831092
-
Molecular dynamics simulations of stratum corneum lipid models: Fatty acids and cholesterol
-
Höltje, M., T. Förster, B. Brandt, T. Engels, W. von Rybinski, and H.-D. Höltje. 2001. Molecular dynamics simulations of stratum corneum lipid models: fatty acids and cholesterol. Biochim. Biophys. Acta. 1511:156-167.
-
(2001)
Biochim. Biophys. Acta
, vol.1511
, pp. 156-167
-
-
Höltje, M.1
Förster, T.2
Brandt, B.3
Engels, T.4
Von Rybinski, W.5
Höltje, H.-D.6
-
19
-
-
0031551246
-
Role of the C-H⋯O hydrogen bonds in liquids: A Monte Carlo simulation study of liquid formic acid using a newly developed pair-potential
-
Jedlovsky, P., and L. Turi. 1997. Role of the C-H⋯O hydrogen bonds in liquids: a Monte Carlo simulation study of liquid formic acid using a newly developed pair-potential. J. Phys. Chem. B. 101:5429-5436.
-
(1997)
J. Phys. Chem. B
, vol.101
, pp. 5429-5436
-
-
Jedlovsky, P.1
Turi, L.2
-
21
-
-
0034246046
-
Saturated phospholipids with high melting temperatures form complexes with cholesterol in monolayers
-
Keller, S. L., A. Radhakrishnan, and H. M. McConnell. 2000. Saturated phospholipids with high melting temperatures form complexes with cholesterol in monolayers. J. Phys. Chem. B. 104:7522-7527.
-
(2000)
J. Phys. Chem. B
, vol.104
, pp. 7522-7527
-
-
Keller, S.L.1
Radhakrishnan, A.2
McConnell, H.M.3
-
22
-
-
0035789518
-
Gromacs 3.0: A package for molecular simulation and trajectory analysis
-
Lindahl, E., B. Hess, and D. van der Spoel. 2001. Gromacs 3.0: a package for molecular simulation and trajectory analysis. J. Mol. Model. 7:306-317.
-
(2001)
J. Mol. Model
, vol.7
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
Van Der Spoel, D.3
-
23
-
-
36449000104
-
Structure and hydrogen bond dynamics of water-dimethyl sulfoxide mixtures by computer simulation
-
Luzar, A., and D. Chandler. 1993. Structure and hydrogen bond dynamics of water-dimethyl sulfoxide mixtures by computer simulation. J. Clin. Pothol. 98:8160-8173.
-
(1993)
J. Clin. Pothol.
, vol.98
, pp. 8160-8173
-
-
Luzar, A.1
Chandler, D.2
-
24
-
-
0001541657
-
Investigation of phase transitions of lipids and lipid mixtures by high sensitivity differential scanning calorimetry
-
Mabrey, S., and J. M. Sturtevant. 1976. Investigation of phase transitions of lipids and lipid mixtures by high sensitivity differential scanning calorimetry. Proc. Natl. Acad. Sci. USA. 73:3862-3866.
-
(1976)
Proc. Natl. Acad. Sci. USA
, vol.73
, pp. 3862-3866
-
-
Mabrey, S.1
Sturtevant, J.M.2
-
25
-
-
0037429704
-
Condensed complexes of cholesterol and phospholipids
-
McConnell, H. M., and A. Radhakrishnan. 2003. Condensed complexes of cholesterol and phospholipids. Biochim. Biophys. Acta. 1610:159-173.
-
(2003)
Biochim. Biophys. Acta
, vol.1610
, pp. 159-173
-
-
McConnell, H.M.1
Radhakrishnan, A.2
-
27
-
-
0036198064
-
From lanosterol to cholesterol: Structural evolution and differential effects on lipid bilayers
-
Miao, L., M. Nielsen, J. Thewalt, J. H. Ipsen, M. Bloom, M. J. Zuckermann, and O. G. Mouritsen. 2002. From lanosterol to cholesterol: structural evolution and differential effects on lipid bilayers. Biophys. J. 82:1429-1444.
-
(2002)
Biophys. J.
, vol.82
, pp. 1429-1444
-
-
Miao, L.1
Nielsen, M.2
Thewalt, J.3
Ipsen, J.H.4
Bloom, M.5
Zuckermann, M.J.6
Mouritsen, O.G.7
-
28
-
-
0030879626
-
Variation in strength of an unconventional C-H to O hydrogen bond in an engineered protein cavity
-
Musah, R. A., G. M. Jensen, R. J. Rosenfeld, D. E. McRee, D. B. Goodin, and S. W. Bunte. 1997. Variation in strength of an unconventional C-H to O hydrogen bond in an engineered protein cavity. J. Am. Chem. Soc. 119:9083-9084.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 9083-9084
-
-
Musah, R.A.1
Jensen, G.M.2
Rosenfeld, R.J.3
McRee, D.E.4
Goodin, D.B.5
Bunte, S.W.6
-
29
-
-
84926811618
-
Constant pressure molecular dynamics for molecular systems
-
Nose, S., and M. L. Klein. 1983. Constant pressure molecular dynamics for molecular systems. Mol. Phys. 50:1055-1076.
-
(1983)
Mol. Phys.
, vol.50
, pp. 1055-1076
-
-
Nose, S.1
Klein, M.L.2
-
30
-
-
0036027683
-
Cholesterol interactions with phospholipids in membranes
-
Ohvo-Rekilä, H., B. Ramstedt, P. Leppimäki, and J. P. Slotte. 2002. Cholesterol interactions with phospholipids in membranes. Prog. Lipid Res. 41:66-97.
-
(2002)
Prog. Lipid Res.
, vol.41
, pp. 66-97
-
-
Ohvo-Rekilä, H.1
Ramstedt, B.2
Leppimäki, P.3
Slotte, J.P.4
-
31
-
-
0038172222
-
Identity, energy, and environment of interfacial water molecules in a micellar solution
-
Pal, S., S. Balasubramanian, and B. Bagchi. 2003. Identity, energy, and environment of interfacial water molecules in a micellar solution. J. Phys. Chem. B. 107:5194-5202.
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 5194-5202
-
-
Pal, S.1
Balasubramanian, S.2
Bagchi, B.3
-
32
-
-
0242290834
-
Mixed bilayer containing dipalmitoylphosphatidylcholine and dipalmitoylphosphatidylserine:lipid complexation, ion binding, and electrostatics
-
Pandit, S. A., D. Bostick, and M. L. Berkowitz. 2003a. Mixed bilayer containing dipalmitoylphosphatidylcholine and dipalmitoylphosphatidylserine:lipid complexation, ion binding, and electrostatics. Biophys. J. 85:3120-3131.
-
(2003)
Biophys. J.
, vol.85
, pp. 3120-3131
-
-
Pandit, S.A.1
Bostick, D.2
Berkowitz, M.L.3
-
33
-
-
0037678992
-
Molecular dynamics simulation of a dipalmitoylphosphatidylcholine bilayer with NaCl
-
Pandit, S. A., D. Bostick, and M. L. Berkowitz. 2003b. Molecular dynamics simulation of a dipalmitoylphosphatidylcholine bilayer with NaCl. Biophys. J. 86:3743-3750.
-
(2003)
Biophys. J.
, vol.86
, pp. 3743-3750
-
-
Pandit, S.A.1
Bostick, D.2
Berkowitz, M.L.3
-
34
-
-
0019707626
-
Polymorphic transitions in single crystals: A new molecular dynamics method
-
Parrinello, M., and A. Rahman. 1981. Polymorphic transitions in single crystals: a new molecular dynamics method. J. Appl. Phys. 52:7182-7190.
-
(1981)
J. Appl. Phys.
, vol.52
, pp. 7182-7190
-
-
Parrinello, M.1
Rahman, A.2
-
35
-
-
0343067147
-
Cholesterol effects on the phosphatidylcholine bilayer polar region: A molecular simulation study
-
Pasenkiewicz-Gierula, M., T. Róg, K. Kitamura, and A. Kusumi. 2000. Cholesterol effects on the phosphatidylcholine bilayer polar region: a molecular simulation study. Biophys. J. 78:1376-1389.
-
(2000)
Biophys. J.
, vol.78
, pp. 1376-1389
-
-
Pasenkiewicz-Gierula, M.1
Róg, T.2
Kitamura, K.3
Kusumi, A.4
-
36
-
-
0033732176
-
Condensed complexes, rafts, and the chemical activity of cholesterol in membranes
-
Radhakrishnan, A., T. G. Anderson, and H. M. McConnell. 2000. Condensed complexes, rafts, and the chemical activity of cholesterol in membranes. Proc. Natl. Acad. Sci. USA. 97:12422-12427.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 12422-12427
-
-
Radhakrishnan, A.1
Anderson, T.G.2
McConnell, H.M.3
-
37
-
-
0033585609
-
Cholesterol-phospholipid complexes in membranes
-
Radhakrishnan, A., and H. M. McConnell. 1999. Cholesterol-phospholipid complexes in membranes. J. Am. Chem. Soc. 121:486-487.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 486-487
-
-
Radhakrishnan, A.1
McConnell, H.M.2
-
39
-
-
0034805275
-
Cholesterol effects on the phosphatidylcholine bilayer nonpolar region: A molecular simulation study
-
Róg, T., and M. Pasenkiewicz-Gierula. 2001. Cholesterol effects on the phosphatidylcholine bilayer nonpolar region: a molecular simulation study. Biophys. J. 81:2190-2202.
-
(2001)
Biophys. J.
, vol.81
, pp. 2190-2202
-
-
Róg, T.1
Pasenkiewicz-Gierula, M.2
-
40
-
-
0004062244
-
Lipid-cholesterol phase diagrams: Theoretical and numerical aspects
-
L. Finegold, editor. CRC Press, Boca Raton, FL
-
Scott, H. L. 1993. Lipid-cholesterol phase diagrams: theoretical and numerical aspects. In Cholesterol in Model Membranes. L. Finegold, editor. CRC Press, Boca Raton, FL. 197-222.
-
(1993)
Cholesterol in Model Membranes
, pp. 197-222
-
-
Scott, H.L.1
-
41
-
-
0030949124
-
Functional rafts in cell membranes
-
Simons, K., and E. Ikonen. 1997. Functional rafts in cell membranes. Nature. 387:569-572.
-
(1997)
Nature
, vol.387
, pp. 569-572
-
-
Simons, K.1
Ikonen, E.2
-
42
-
-
0034529050
-
How cells handle cholesterol
-
Simons, K., and E. Ikonen. 2000. How cells handle cholesterol. Science. 290:1721-1726.
-
(2000)
Science
, vol.290
, pp. 1721-1726
-
-
Simons, K.1
Ikonen, E.2
-
43
-
-
0032863720
-
Structure of dipalmitoylphosphatidylcholine/cholesterol bilayer at low and high cholesterol concentrations: Molecular dynamics simulation
-
Smondyrev, A. M., and M. L. Berkowitz. 1999a. Structure of dipalmitoylphosphatidylcholine/cholesterol bilayer at low and high cholesterol concentrations: molecular dynamics simulation. Biophys. J. 77:2075-2089.
-
(1999)
Biophys. J.
, vol.77
, pp. 2075-2089
-
-
Smondyrev, A.M.1
Berkowitz, M.L.2
-
44
-
-
5244326635
-
United atom force field for phospholipid membranes: Constant pressure molecular dynamics simulation of dipalmitoylphosphatidicholine/water system
-
Smondyrev, A. M., and M. L. Berkowitz. 1999b. United atom force field for phospholipid membranes: constant pressure molecular dynamics simulation of dipalmitoylphosphatidicholine/water system. J. Comput. Chem. 50:531-545.
-
(1999)
J. Comput. Chem.
, vol.50
, pp. 531-545
-
-
Smondyrev, A.M.1
Berkowitz, M.L.2
-
45
-
-
0000496857
-
Geometry of C-H⋯O hydrogen bonds in carbohydrate crystal structures. Analysis of neutron diffraction data
-
Steiner, T., and W. Saenger. 1992. Geometry of C-H⋯O hydrogen bonds in carbohydrate crystal structures. Analysis of neutron diffraction data. J. Am. Chem. Soc. 114:10146-10154.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 10146-10154
-
-
Steiner, T.1
Saenger, W.2
-
46
-
-
0006474999
-
Role of C-H⋯O hydrogen bonds in the coordination of water molecules. Analysis of neutron diffraction data
-
Steiner, T., and W. Saenger. 1993. Role of C-H⋯O hydrogen bonds in the coordination of water molecules. Analysis of neutron diffraction data. J. Am. Chem. Soc. 115:4540-4547.
-
(1993)
J. Am. Chem. Soc.
, vol.115
, pp. 4540-4547
-
-
Steiner, T.1
Saenger, W.2
-
47
-
-
51149211502
-
Improved simulation of liquid water by molecular dynamics
-
Stillinger, F., and A. Rahman. 1974. Improved simulation of liquid water by molecular dynamics. J. Chem. Phys. 60:1545-1557.
-
(1974)
J. Chem. Phys.
, vol.60
, pp. 1545-1557
-
-
Stillinger, F.1
Rahman, A.2
-
48
-
-
0026700004
-
Phophatidylcholine: Cholesterol phase diagram
-
Thewalt, J. L., and M. Bloom. 1992. Phophatidylcholine: cholesterol phase diagram. Biophys. J. 63:1176-1181.
-
(1992)
Biophys. J.
, vol.63
, pp. 1176-1181
-
-
Thewalt, J.L.1
Bloom, M.2
-
49
-
-
0031752966
-
Constant-pressure molecular dynamics investigation of cholesterol effects in a dipalmitoylphosphatidylcholine bilayer
-
Tu, K., M. L. Klein, and D. J. Tobias. 1998. Constant-pressure molecular dynamics investigation of cholesterol effects in a dipalmitoylphosphatidylcholine bilayer. Biophys. J. 75:2147-2156.
-
(1998)
Biophys. J.
, vol.75
, pp. 2147-2156
-
-
Tu, K.1
Klein, M.L.2
Tobias, D.J.3
-
50
-
-
12244270658
-
Organization in lipid membranes containing cholesterol
-
Veatch, S. L., and S. L. Keller. 2002. Organization in lipid membranes containing cholesterol. Phys. Rev. Lett. 89:268101-1.
-
(2002)
Phys. Rev. Lett.
, vol.89
, pp. 268101-268101
-
-
Veatch, S.L.1
Keller, S.L.2
-
52
-
-
0035819175
-
Hydrogen-bond kinetics in the solvation shell of a polypeptide
-
Xu, H., and B. Berne. 2001. Hydrogen-bond kinetics in the solvation shell of a polypeptide. J. Phys. Chem. B. 105:11929-11932.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 11929-11932
-
-
Xu, H.1
Berne, B.2
-
53
-
-
0034620610
-
The effect of sterol structure on membrane lipid domains reveals how cholesterol can induce lipid domain formation
-
Xu, X., and E. London. 2000. The effect of sterol structure on membrane lipid domains reveals how cholesterol can induce lipid domain formation. Biochemistry. 39:843-849.
-
(2000)
Biochemistry
, vol.39
, pp. 843-849
-
-
Xu, X.1
London, E.2
-
54
-
-
0003016428
-
The biophysics and cell biology of cholesterol: An hypothesis for the essential role of cholesterol in mammalian cells
-
L. Finegold, editor. CRC Press, Boca Raton, FL
-
Yeagle, P. L. 1993. The biophysics and cell biology of cholesterol: an hypothesis for the essential role of cholesterol in mammalian cells. In Cholesterol in Membrane Models. L. Finegold, editor. CRC Press, Boca Raton, FL. 1-12.
-
(1993)
Cholesterol in Membrane Models
, pp. 1-12
-
-
Yeagle, P.L.1
|