Beyond transcription factors

Allergy and Clinical Immunology International

Volumn 16, Issue 1, 2004, Pages 20-27

  Borish, Larry ^a   Steinke, John W ^a  

^a UNIVERSITY OF VIRGINIA   (United States)

Author keywords

Allergy; Asthma; Etiology; Genes; Transcription

Indexed keywords

ALLERGEN; GENE PRODUCT; HISTONE; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; MESSENGER RNA; NAKED DNA; RNA POLYMERASE II; TOLL LIKE RECEPTOR 9; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR GATA 3; TRANSCRIPTION FACTOR IIA; TRANSCRIPTION FACTOR IIB; TRANSCRIPTION FACTOR IID;

ALLELE; ALLERGIC DISEASE; ALLERGIC REACTION; ASTHMA; DISEASE COURSE; EMBRYO DEVELOPMENT; ENVIRONMENTAL CHANGE; EPIGENETICS; EVOLUTION; GAMETOGENESIS; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE TARGETING; GENETIC PREDISPOSITION; GENETIC SCREENING; GENOME IMPRINTING; HUMAN; IMMUNE SYSTEM; LYMPHOCYTE COUNT; MASS SCREENING; PREDICTION; PREVALENCE; PROGENY; PROTEIN MODIFICATION; PROTEIN PROCESSING; REVIEW; RNA SPLICING; RNA STABILITY; SCIENTIFIC LITERATURE; TH1 CELL; TH2 CELL; TRANSCRIPTION REGULATION;

EID: 1542299254     PISSN: 08381925     EISSN: None     Source Type: Journal    
DOI: 10.1027/0838-1925.16.1.20     Document Type: Review

References (39)

1. Chen PX, Losman JA, Rothman P. SOCS proteins, regulators of intracellular signaling. Immunity 2000; 13:287-290
2. Bral CM, Steinke JW, Kang C, Peterson DO. RNA polymerase II transcription complex assembly in nuclear extracts. Gene Expression 1998; 7:191-204
3. Lemon B, Tjian R. Orchestrated response: a symphony of transcription factors for gene control. Genes Dev 2000; 14:2551-2569
4. Steinke JW, Kopytek SJ, Peterson DO. Discrete promoter elements affect specific properties of RNA polymerase II transcription complexes. Nucleic Acids Research 2000; 28:2726-2735
5. Fee BE, Steinke JW, Pierce J, Peterson DO. Initiation site binding protein and the initiator-like promoter element of mouse mammary tumor virus. Virology 2002; 302:185-194
6. Orphanides G, Lagrange T, Reinberg D. General initiation factors of RNA polymerase II. Genes Dev 1996; 10:2657-2683
7. Chang M, Jaehning JA. A multiplicity of mediators: Alternative forms of transcription complexes communicate with transcriptional regulators. Nucleic Acids Research 1997; 25:4861-4865
8. Myer VE, Young RA. RNA polymerase II holoenzymes and subcomplexes. J Biol Chem 1998; 273:27757-27760
9. Ranish JA, Yudkovsky N, Hahn S. Intermediates in formation and activity of the RNA polymerase II preinitiation complex: holoenzyme recruitment and a postrecruitment role for the TATA box and TFIIB. Genes Dev 1999; 13:49-63
10. Hayes JJ, Wolffe AP. The interaction of transcription factors with nucleosomal DNA. BioEssays 1992; 14:597-603
11. Straka C, Horz W. A functional role for nucleosomes in the repression of a yeast promoter. EMBO J 1991; 10:361-368
12. Perlmann T, Wrange O. Specific glucocorticoid receptor binding to DNA reconstituted in a nucleosome. EMBO J 1988; 7:3073-3079
13. Richard-Foy H, Hager GL. Sequence-specific positioning of nucleosomes over the steroid-inducible MMTV promoter. EMBO J 1987; 6:2321-2328
14. Archer TK, Cordingley MG, Wolford RG, Hager GL. Transcription factor access is mediated by accurately positioned nucleosomes on the mouse mammary tumor virus promoter. Mol Cell Biol 1991; 11:688-698
15. Attema JL, Reeves R, Murray V, Levichkin I, Temple MD, Tremethick DJ, Shannon ME The hman IL-2 gene promoter can assemble a positioned nucleosome that becomes remodeled upon T cell activation. J Immunol 2002; 169:2466-2476
16. Fraga M, Esteller M. DNA methylation: a profile of methods and applications. BioTechniques 2002; 33:632-649
17. Gonzalgo ML, Hayashida T, Bender CM, Pao MM, Tsai YC, Gonzales FA, Nguyen HD, Nguyen TT, Jones PA. The role of DNA methylation in expression of the p19/p16 locus in human bladder cancer cell lines. Cancer Research 1998; 58:1245-1252
18. Jones PA, Takai D. The role of DNA methylation in mammalian epigenetics. Science 2001; 293:1068-1070
19. Cookson WO, Sharp PA, Faux JA, Hopkin JM. Linkage between immunoglobulin E responses underlying asthma and rhinitis and chromosome 11q. Lancet 1989; 1:1292-1295
20. Hamada K, Suzaki Y, Goldman A, Ning Y, Goldsmith C, Palecanda A, Coull B, Hubeau C, Kobzik L. Allergen-independent maternal transmission of asthma susceptibilty. J Immunol 2003; 170:1683-1689
21. Roth SY, Denu JM, Allis CD. Histone acetyltransferases. Annu Rev Biochem 2001; 70:81-120
22. Tyler JK, Kadonaga JT. The "dark side" of chromatin remodeling: repressive effects on transcription. Cell 1999; 99:443-446
23. Maes J, O'Neill LP, Cavelier P, Turner BM, Rougeon F, Goodhardt M. Chromatin remodeling at the Ig loci prior to V(D)J recombination. J Immunol 2001; 167:866-874
24. Jenuwein T, Allis CD. Translating the histone code. Science 2001; 293:1074-1080
25. Ray A, Cohn L. Th2 cells and GATA-3 in asthma: new insights into the regulation of airway inflammation. J Clin Invest 1999; 104:985-993
26. Zheng W-P, Flavell RA. The transcription factor GATA-3 is necessary and sufficient for Th2 cytokine gene expression in CD4 T cells. Cell 1997; 89:587-596
27. Szabo SJ, Kim ST, Costa GL, Zhang X, Fathman CG, Glimcher LH. A novel transcription factor, T-bet, directs Th1 lineage commitment. Cell 2000; 100:655-669
28. Borish L, Steinke JW, Davidson B, Shames RS, Agosti JM. Interleukin-4 inhibition for the treatment of asthma. Biotherapeutic approaches to asthma. New York: Marcel Decker, Inc.; 2002. p 107-132
29. Farrar JD, Asnagli H, Murphy KM. T helper subset development: roles of instruction, selection, and transcription. J Clin Invest 2002; 109:431-435
30. Agarwal S, Rao A. Modulation of chromatin structure regulates cytokine gene expression during T cell activation. Immunity 1998; 9:765-775
31. Lighvani AA, Frucht DM, Jankovic D, Yamane H, Aliberti J, Hissong BD, Nguyen BV, Gadina M, Sher A, Paul WE and others. T-bet is rapidly induced by interferon-gamma in lymphoid and myloid cells. Proc Natl Acad Sci USA 2001; 98(15137-15142)
32. Fields PE, Kim ST, Flavell RA. Changes in histone acetylation at the IL-4 and IFN-γ loci accompany Th1/Th2 differentiation. J Immunol 2002; 169:647-650
33. Zhang D-H, Yang L, Cohn L, Parkyn L, Homer R, Ray P, Ray A. Inhibition of allergic inflammation in a murine model of asthma by expression of a dominant-negative mutant of GATA-3. Immunity 1999; 11:473-482
34. Nakamura Y, Ghaffar O, Olivenstein R, Taha RA, Soussi-Gounni A, Zhang D-H, Ray A, Hamid Q. Gene expression of the GATA-3 transcription factor is increased in atopic asthma. J Allergy Clin Immunol 1999; 103:215-222
35. Finotto S, Neurath MF, Glickman JN, Qin S, Lehr HA, Green FHY, Ackerman K, Haley K, Galle PR, Szabo SJ and others. Development of spontaneous airway changes consistent with human asthma in mice lacking T-bet. Science 2002; 295:336-338
36. Mullen AC, Hutchins AS, High FA, Lee HW, Sykes KJ, Chodosh LA, Reiner SL. Hlx is induced by and genetically interacts with T-bet to promote heritable Th1 gene induction. Nature Immunology 2002; 3:652-658
37. Takemoto N, Koyano-Nakagawa N, Yorkota T, Arai N, Miyatake S, Arai K. Th2-specific DNase I-hypersensitive sites in the murine IL-13 and IL-4 intergenic region. Int Immunol 1998; 10:1981-1985
38. Agosti JM, Sprenger JD, Lum LG, Witherspoon RP, Fisher LD, Storb R, Henderson WRJ. Transfer of allergen-specific IgE-mediated hypersensitivity with allogenic bone marrow transplantation. N Engl J Med 1988; 319:1623-1628
39. Phan TG, Strasser SI, Koorey D, McCaughan GW, Rimmer J, Dunckley H, Goddard L, Adelstein S. Passive transfer of nut allergy after liver transplantation. Arch Intern Med 2003; 163:237-239.