Overexpression of LSH1, a member of an uncharacterised gene family, causes enhanced light regulation of seedling development

Plant Journal

Volumn 37, Issue 5, 2004, Pages 694-706

  Zhao, Li ^a   Nakazawa, Miki ^a   Takase, Tomoyuki ^a,b   Manabe, Katsushi ^b   Kobayashi, Masatomo ^c   Seki, Motoaki ^a,c   Shinozaki, Kazuo ^a,c   Matsui, Minami ^a  

^a RIKEN YOKOHAMA INSTITUTE   (Japan)

^b YOKOHAMA CITY UNIVERSITY   (Japan)

^c RIKEN TSUKUBA INSTITUTE   (Japan)

Author keywords

Activation tagging; Arabidopsis; Light; LSH1; New gene family; Photoreceptors

Indexed keywords

CHROMOPHORES; GENETIC ENGINEERING; GROWTH KINETICS; MUTAGENESIS; PHOTOSENSITIVITY; SEED;

MUTANTS; PHOTORECEPTORS;

PLANT CELL CULTURE;

ARABIDOPSIS PROTEIN; BACTERIAL DNA; LSH1 PROTEIN, ARABIDOPSIS; NUCLEAR PROTEIN; PHYTOCHROME; PLANT DNA; T DNA; T-DNA;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; CHEMISTRY; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; LIGHT; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; MULTIGENE FAMILY; MUTATION; NUCLEOTIDE SEQUENCE; PHENOTYPE; PLANT GROWTH; PLANT ROOT; RADIATION EXPOSURE; SEQUENCE HOMOLOGY; SEQUENCE TAGGED SITE;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CLONING, MOLECULAR; DNA, BACTERIAL; DNA, PLANT; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; HYPOCOTYL; LIGHT; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; MUTATION; NUCLEAR PROTEINS; PHENOTYPE; PHYTOCHROME; PLANT ROOTS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE TAGGED SITES;

ARABIDOPSIS; BACTERIA (MICROORGANISMS);

EID: 1542288833     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2003.01993.x     Document Type: Article

References (47)

1. Ahmad, M. and Cashmore, A.R. (1993) HY4 gene of A. thaliana encodes a protein with characteristics of a blue-light photoreceptor. Nature, 366, 162-166.
2. Ang, L.H., Chattopadhyay, S., Wei, N., Oyama, T., Okada, K., Batschauer, A. and Deng, X.W. (1998) Molecular interaction between COP1 and HY5 defines a regulatory switch for light control of Arabidopsis development. Mol. Cell, 1, 213-222.
3. Ballesteros, M.L., Bolle, C., Lois, L.M., Moore, J.M., Vielle-Calzada, J.P., Grossniklaus, U. and Chua, N.H. (2001) LAF1, a MYB transcription activator for phytochrome A signalling. Genes Dev. 15, 2613-2625.
4. Barnes, S.A., Quaggio, R.B., Whitelam, G.C. and Chua, N.H. (1996) fhy1 defines a branch point in phytochrome A signal transduction pathways for gene expression. Plant J. 10, 1155-1161.
5. Bolle, C., Koncz, C. and Chua, N.H. (2000) PAT1, a new member of the GRAS family, is involved in phytochrome A signal transduction. Genes Dev. 14, 1269-1278.
6. Briggs, W.R. and Olney, M.A. (2001) Photoreceptors in plant photomorphogenesis to date: five phytochromes, two cryptochromes, one phototropin, and one superchrome. Plant Physiol. 125, 85-88.
7. Buche, C., Poppe, C., Schafer, E. and Kretsch, T. (2000) eid1: a new Arabidopsis mutant hypersensitive in phytochrome A-dependent high-irradiance responses. Plant Cell, 12, 547-558.
8. Clough, S.J. and Bent, A.F. (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743.
9. Davis, S.J., Kurepa, J. and Vierstra, R.D. (1999) The Arabidopsis thaliana HY1 locus, required for phytochrome-chromophore biosynthesis, encodes a protein related to heme oxygenases. Proc. Natl. Acad. Sci. USA, 96, 6541-6546.
10. Desnos, T., Puente, P., Whitelam, G.C. and Harberd, N.P. (2001) FHY1: a phytochrome A-specific signal transducer. Genes Dev. 15, 2980-2990.
11. Dieterle, M., Zhou, Y.C., Schafer, E., Funk, M. and Kretsch, T. (2001) EID1, an F-box protein involved in phytochrome A-specific light signalling. Genes Dev. 15, 939-944.
12. Fairchild, C.D., Schumaker, M.A. and Quail, P.H. (2000) HFR1 encodes an atypical bHLH protein that acts in phytochrome A signal transduction. Genes Dev. 14, 2377-2391.
13. Gendreau, E., Traas, J., Desnos, T., Grandjean, O., Caboche, M. and Hofte, H. (1997) Cellular basis of hypocotyl growth in Arabidopsis thaliana. Plant Physiol. 114, 295-305.
14. Guo, H., Mockler, T., Duong, H. and Lin, C. (2001) SUB1, an Arabidopsis Ca2+-binding protein involved in cryptochrome and phytochrome coaction. Science, 291, 487-490.
15. Hardtke, C.S., Gohda, K., Osterlund, M.T., Oyama, T., Okada, K. and Deng, X.W. (2000) HY5 stability and activity in Arabidopsis is regulated by phosphorylation in its COP1 binding domain. EMBO J. 19, 4997-5006.
16. Hayashi, H., Czaja, I., Lubenow, H., Schell, J. and Walden, R. (1992) Activation of a plant gene by T-DNA tagging: auxin-independent growth in vitro. Science, 258, 1350-1353.
17. Hennig, L., Poppe, C., Unger, S. and Schafer, E. (1999) Control of hypocotyl elongation in Arabidopsis thaliana by photoreceptor interaction. Planta, 208, 257-263.
18. Hoecker, U., Xu, V. and Quail, P.H. (1998) SPA1: a new genetic locus involved in phytochrome A-specific signal transduction. Plant Cell, 10, 19-33.
19. Hoecker, U., Tepperman, J.M. and Quail, P.H. (1999) SPA1, a WD-repeat protein specific to phytochrome A signal transduction. Science, 284, 496-499.
20. Hsieh, H.L., Okamoto, H., Wang, M., Ang, L.H., Matsui, M., Goodman, H. and Deng, X.W. (2000) FIN219, an auxin-regulated gene, defines a link between phytochrome A and the downstream regulator COP1 in light control of Arabidopsis development. Genes Dev. 14, 1958-1970.
21. Hudson, M., Ringli, C., Boylan, M.T. and Quail, P.H. (1999) The FAR1 locus encodes a novel nuclear protein specific to phytochrome A signalling. Genes Dev, 13, 2017-2027.
22. Huq, E. and Quail, P.H. (2002) PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signalling in Arabidopsis. EMBO J. 21, 2441-2450.
23. Kendrick, R.E. and Kronenberg, G.H.M. (1994) Photomorphogenesis in Plants. Dordrecht, the Netherlands: Kluwer Academic Publishers.
24. Kwok, S.F., Piekos, B., Misera, S. and Deng, X.W. (1996) A complement of ten essential and pleiotropic Arabidopsis COP/DET/ FUS genes is necessary for repression of photomorphogenesis in darkness. Plant Physiol. 110, 731-742.
25. Liu, Y.G., Mitsukawa, N., Oosumi, T. and Whittier, R.F. (1995) Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J. 8, 457-463.
26. Martinez-Garcia, J.F., Huq, E. and Quail, P.H. (2000) Direct targeting of light signals to a promoter element-bound transcription factor. Science, 288, 859-863.
27. Moller, S.G., Kunkel, T. and Chua, N.H. (2001) A plastidic ABC protein involved in intercompartmental communication of light signalling. Genes Dev. 15, 90-103.
28. Muramoto, T., Kohchi, T., Yokota, A., Hwang, I. and Goodman, H.M. (1999) The Arabidopsis photomorphogenic mutant hy1 is deficient in phytochrome chromophore biosynthesis as a result of a mutation in a plastid heme oxygenase. Plant Cell, 11, 335-348.
29. Nagatani, A., Reed, J.W. and Chory, J. (1993) Isolation and initial characterization of Arabidopsis mutants that are deficient in phytochrome A. Plant Physiol. 102, 269-277.
30. Nakazawa, M., Yabe, N., Ichikawa, T., Yamamoto, Y.Y., Yoshizumi, T., Hasunuma, K. and Matsui, M. (2001) DFL1, an auxin-responsive GH3 gene homologue, negatively regulates shoot cell elongation and lateral root formation, and positively regulates the light response of hypocotyl length. Plant J. 25, 213-221.
31. Nakazawa, M., Ichikawa, T., Ishikawa, A., Kobayashi, H., Tsuhara, Y., Kawashima, M., Suzuki, K., Muto, S. and Matsui, M. (2003) Activation tagging, a novel tool to dissect the functions of a gene family. Plant J. 34, 741-750.
32. Neff, M.M. and Chory, J. (1998) Genetic interactions between phytochrome A, phytochrome B, and cryptochrome 1 during Arabidopsis development. Plant Physiol. 118, 27-35.
33. Oyama, T., Shimura, Y. and Okada, K. (1997) The Arabidopsis HY5 gene encodes a bZIP protein that regulates stimulus-induced development of root and hypocotyl. Genes Dev. 11, 2983-2995.
34. Park, D.H., Lim, P.O., Kim, J.S., Cho, D.S., Hong, S.H. and Nam, H.G. (2003) The Arabidopsis COG1 gene encodes a Dof domain transcription factor and negatively regulates phytochrome signalling. Plant J. 34, 161-171.
35. Qin, M., Kuhn, R., Moran, S. and Quail, P.H. (1997) Overexpressed phytochrome C has similar photosensory specificity to phytochrome B but a distinctive capacity to enhance primary leaf expansion. Plant J. 12, 1163-1172.
36. Quail, P.H., Boylan, M.T., Parks, B.M., Short, T.W., Xu, Y. and Wagner, D. (1995) Phytochromes: photosensory perception and signal transduction. Science, 268, 675-680.
37. Reed, J.W., Nagpal, P., Poole, D.S., Furuya, M. and Chory, J. (1993) Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development. Plant Cell, 5, 147-157.
38. Reed, J.W., Nagatani, A., Elich, T.D., Fagan, M. and Chory, J. (1994) Phytochrome A and phytochrome B have overlapping but distinct functions in Arabidopsis development. Plant Physiol. 104, 1139-1149.
39. Sharrock, R.A. and Quail, P.H. (1989) Novel phytochrome sequences in Arabidopsis thaliana: structure, evolution, and differential expression of a plant regulatory photoreceptor family. Genes Dev. 3, 1745-1757.
40. Staiger, D., Allenbach, L., Salathia, N., Fiechter, V., Davis, S.J., Millar, A.J., Chory, J. and Fankhauser, C. (2003) The Arabidopsis SRR1 gene mediates phyB signalling and is required for normal circadian clock function. Genes Dev. 17, 256-268.
41. Valvekens, D.V.M.M. and Van Lijsebettns, M. (1988) Agrobacterium tumefaciens-mediated transformation of Arabidopsis thali-ana root explants by using kanamycin selection. Proc. Natl. Acad. Sci. USA, 93, 8129-8133.
42. Wagner, D., Hoecker, U. and Quail, P.H. (1997) RED1 is necessary for phytochrome B-mediated red light-specific signal transduction in Arabidopsis. Plant Cell, 9, 731-743.
43. Wang, H. and Deng, X.W. (2002) Arabidopsis FHY3 defines a key phytochrome A signalling component directly interacting with its homologous partner FAR1. EMBO J. 21, 1339-1349.
44. Wei, N. and Deng, X.W. (1996) The role of the COP/DET/FUS genes in light control of Arabidopsis seedling development. Plant Physiol. 112, 871-878.
45. Whitelam, G.C., Johnson, E., Peng, J., Carol, P., Anderson, M.L., Cowl, J.S. and Harberd, N.P. (1993) Phytochrome A null mutants of Arabidopsis display a wild-type phenotype in white light. Plant Cell, 5, 757-768.
46. Yamamoto, Y.Y., Deng, X.W. and Matsui, M. (2001) Cip4, a new cop1 target, is a nucleus-localized positive regulator of Arabidopsis photomorphogenesis. Plant Cell, 13, 399-411.
47. Yoshizumi, T., Nagata, N., Shimada, H. and Matsui, M. (1999) An Arabidopsis cell cycle -dependent kinase-related gene, CDC2b, plays a role in regulating seedling growth in darkness. Plant Cell, 11, 1883-1896.