메뉴 건너뛰기




Volumn 51, Issue 1, 2005, Pages 83-90

Vertical Changes in Bacterial Communities in Percolating Water of a Japanese Paddy Field as Revealed by PCR-DGGE

Author keywords

Bacterial communities; Floodwater; Paddy field; Pcr dgge; Percolating water

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 15044355048     PISSN: 00380768     EISSN: 17470765     Source Type: Journal    
DOI: 10.1111/j.1747-0765.2005.tb00010.x     Document Type: Article
Times cited : (8)

References (33)
  • 1
    • 0036672093 scopus 로고    scopus 로고
    • Microbial diversity in an in situ reactor system treating monochlorobenzene contaminated groundwater as revealed by 16S ribosomal DNA analysis
    • Alfreider A, Vogt C, and Babel W 2002: Microbial diversity in an in situ reactor system treating monochlorobenzene contaminated groundwater as revealed by 16S ribosomal DNA analysis. Syst. Appl. Microbiol., 25, 232-240
    • (2002) Syst. Appl. Microbiol. , vol.25 , pp. 232-240
    • Alfreider, A.1    Vogt, C.2    Babel, W.3
  • 2
    • 85010612166 scopus 로고    scopus 로고
    • Aoki S 1996:http://aoki2.si.gunma-u.ac.jp/bbO/BlackBoxO.html
    • (1996)
    • Aoki, S.1
  • 3
    • 18744372402 scopus 로고    scopus 로고
    • Recovery of novel bacterial diversity from a forested wetland impacted by reject coal
    • Brofft JE, McArthur JV, and Shimkets LJ 2002: Recovery of novel bacterial diversity from a forested wetland impacted by reject coal. Environ. Microbiol., 4, 764-769
    • (2002) Environ. Microbiol , vol.4 , pp. 764-769
    • Brofft, J.E.1    McArthur, J.V.2    Shimkets, L.J.3
  • 4
    • 0037445306 scopus 로고    scopus 로고
    • The impact of grassland management regime on the community structure of selected bacterial groups in soils
    • Clegg CD, Lovell RDL, and Hobbs PJ 2003: The impact of grassland management regime on the community structure of selected bacterial groups in soils. FEMS Microbiol. Ecol., 43,263-270
    • (2003) FEMS Microbiol. Ecol. , vol.43 , pp. 263-270
    • Clegg, C.D.1    Lovell, R.2    Hobbs, P.J.3
  • 5
    • 0036250038 scopus 로고    scopus 로고
    • Diversity and ubiquity of bacteria capable of utilizing humic substances as electron donors for anaerobic respiration
    • Coates JD, Cole KA, Chakraborty R, O’Connor SM, and Achenbach LA 2002: Diversity and ubiquity of bacteria capable of utilizing humic substances as electron donors for anaerobic respiration. Appl. Environ. Microbiol., 68, 2445-2452
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 2445-2452
    • Coates, J.D.1    Cole, K.A.2    Chakraborty, R.3    O’Connor, S.M.4    Achenbach, L.A.5
  • 8
    • 0037817409 scopus 로고    scopus 로고
    • Het- erotrophic bacterial growth efficiency and community structure at different natural organic carbon concentrations
    • Eiler A, Langenheder S, Bertilsson S, and Tranvik LJ 2003: Het- erotrophic bacterial growth efficiency and community structure at different natural organic carbon concentrations. Appl. Environ. Microbiol., 69, 3701-3709
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 3701-3709
    • Eiler, A.1    Langenheder, S.2    Bertilsson, S.3    Tranvik, L.J.4
  • 10
    • 0028329061 scopus 로고
    • Mutation detection by denaturing gradient electrophoresis (DGGE)
    • Fodde R and Losekoot M 1994: Mutation detection by denaturing gradient electrophoresis (DGGE). Hum. Mut., 3, 83-94
    • (1994) Hum. Mut. , vol.3 , pp. 83-94
    • Fodde, R.1    Losekoot, M.2
  • 11
    • 0345269205 scopus 로고    scopus 로고
    • Isolation of novel ultramicrobacteria classified as Actinobacteria from five freshwater habitats in Europe and Asia
    • Hahn MW, Lunsdorf H, Wu QL, Schauer M, Hofle MG, Boenigk J, and Stadler P 2003: Isolation of novel ultramicrobacteria classified as Actinobacteria from five freshwater habitats in Europe and Asia. Appl. Environ. Microbiol., 69, 1442-1451
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1442-1451
    • Hahn, M.W.1    Lunsdorf, H.2    Wu, Q.L.3    Schauer, M.4    Hofle, M.G.5    Boenigk, J.6    Stadler, P.7
  • 12
    • 0037447817 scopus 로고    scopus 로고
    • Molecular analysis of bacterial microbiota in the gut of the termite Reticulitermes speratus (Isoptera; Rhinotermitidae)
    • Hongoh Y, Ohkuma M, and Kudo T 2003: Molecular analysis of bacterial microbiota in the gut of the termite Reticulitermes speratus (Isoptera; Rhinotermitidae). FEMS Microbiol. Ecol., 44, 231-242
    • (2003) FEMS Microbiol. Ecol. , vol.44 , pp. 231-242
    • Hongoh, Y.1    Ohkuma, M.2    Kudo, T.3
  • 13
    • 0042239256 scopus 로고    scopus 로고
    • Bacterial communities associated with nodal roots of rice plants along with the growth stages: Estimation by PCR-DGGE and sequence analyses
    • Ikenaga M, Asakawa S, Muraoka Y, and Kimura M 2003: Bacterial communities associated with nodal roots of rice plants along with the growth stages: Estimation by PCR-DGGE and sequence analyses. Soil Sci. Plant Nutr., 49, 591-602
    • (2003) Soil Sci. Plant Nutr. , vol.49 , pp. 591-602
    • Ikenaga, M.1    Asakawa, S.2    Muraoka, Y.3    Kimura, M.4
  • 14
    • 1842457611 scopus 로고    scopus 로고
    • A simple remedy against arti- factual double bands in denaturing gradient gel electro-phoresis
    • Janse I, Bok J, and Zwart G 2004: A simple remedy against arti- factual double bands in denaturing gradient gel electro-phoresis. J. Microbiol. Meth., 57, 279-281
    • (2004) J. Microbiol. Meth. , vol.57 , pp. 279-281
    • Janse, I.1    Bok, J.2    Zwart, G.3
  • 15
    • 0029663670 scopus 로고    scopus 로고
    • Enhanced transport of bacteria in porous media by sediment-phase and aqueous-phase natural organic matter
    • Johnson WP and Logan BE 1996: Enhanced transport of bacteria in porous media by sediment-phase and aqueous-phase natural organic matter. Water Res., 30, 923-931
    • (1996) Water Res. , vol.30 , pp. 923-931
    • Johnson, W.P.1    Logan, B.E.2
  • 16
    • 10044289454 scopus 로고    scopus 로고
    • Impact of water percolation on nutrients leached from plow layer and their accumulation in subsoil in an irrigated rice field
    • Katoh M, Murase J, Hayashi M, Matsuya K, and Kimura M 2004a: Impact of water percolation on nutrients leached from plow layer and their accumulation in subsoil in an irrigated rice field. Soil Sci. Plant Nutr., 50, 721-729
    • (2004) Soil Sci. Plant Nutr. , vol.50 , pp. 721-729
    • Katoh, M.1    Murase, J.2    Hayashi, M.3    Matsuya, K.4    Kimura, M.5
  • 17
    • 10044251180 scopus 로고    scopus 로고
    • Site and process of nutrient accumulation in subsoil percolated from the plow layer in a submerged paddy soil microcosm
    • Katoh M, Murase J, and Kimura M 2004b: Site and process of nutrient accumulation in subsoil percolated from the plow layer in a submerged paddy soil microcosm. Soil Sci. Plant Nutr., 50, 731-738
    • (2004) Soil Sci. Plant Nutr. , vol.50 , pp. 731-738
    • Katoh, M.1    Murase, J.2    Kimura, M.3
  • 18
    • 0034809628 scopus 로고    scopus 로고
    • Phospholipid fatty acid composition of microbiota in the percolating water from a rice paddy microcosm
    • Kimura M, Kishi H, Okabe A, and Maie N 2001: Phospholipid fatty acid composition of microbiota in the percolating water from a rice paddy microcosm. Soil Sci. Plant Nutr., 47, 533-545
    • (2001) Soil Sci. Plant Nutr , vol.47 , pp. 533-545
    • Kimura, M.1    Kishi, H.2    Okabe, A.3    Maie, N.4
  • 19
    • 3242769928 scopus 로고    scopus 로고
    • Carbon cycling in rice field ecosystems in the context of input, decomposition and translolation of organic materials and the fates of their end products (CO, and CH4)
    • Kimura M, Murase J, and Lu Y 2004: Carbon cycling in rice field ecosystems in the context of input, decomposition and translolation of organic materials and the fates of their end products (CO, and CH4). Soil Biol. Biochem., 36, 1399— 1416 "
    • (2004) Soil Biol. Biochem , vol.36
    • Kimura, M.1    Murase, J.2    Lu, Y.3
  • 20
    • 0036944004 scopus 로고    scopus 로고
    • Community structure of the microbiota in the floodwater of a Japanese paddy field estimated by restriction fragment length polymorphism and denaturing gradient gel electrophoresis pattern analyses
    • Kimura M, Shibagaki T, Nakajima Y, Matsuya K, and Ikenaga M 2002: Community structure of the microbiota in the floodwater of a Japanese paddy field estimated by restriction fragment length polymorphism and denaturing gradient gel electrophoresis pattern analyses. Biol. Fert. Soils, 36, 306-312
    • (2002) Biol. Fert. Soils , vol.36 , pp. 306-312
    • Kimura, M.1    Shibagaki, T.2    Nakajima, Y.3    Matsuya, K.4    Ikenaga, M.5
  • 21
    • 0031397256 scopus 로고    scopus 로고
    • Bacterial numbers and biomass in leachate and in subsoil of a submerged paddy field
    • Kimura M, Yamashita T, and Ikka T 1997: Bacterial numbers and biomass in leachate and in subsoil of a submerged paddy field. Soil Sci. Plant Nutr., 43, 575-585
    • (1997) Soil Sci. Plant Nutr. , vol.43 , pp. 575-585
    • Kimura, M.1    Yamashita, T.2    Ikka, T.3
  • 22
    • 0031397189 scopus 로고    scopus 로고
    • Origin and properties of humus in the subsoil of irrigated rice paddies. 1. Leaching of organic matter from plow layer soil and accumulation in subsoil
    • Maie N, Watanabe A, and Kimura M 1997: Origin and properties of humus in the subsoil of irrigated rice paddies. 1. Leaching of organic matter from plow layer soil and accumulation in subsoil. Soil Sci. Plant Nutr., 43, 901-910
    • (1997) Soil Sci. Plant Nutr. , vol.43 , pp. 901-910
    • Maie, N.1    Watanabe, A.2    Kimura, M.3
  • 23
    • 0037341253 scopus 로고    scopus 로고
    • Structure and function of the soil microbial community in a long-term fertilizer experiment
    • Marschner P, Kandeler E, and Marschner B 2003: Structure and function of the soil microbial community in a long-term fertilizer experiment. Soil Biol. Biochem., 35, 453-461
    • (2003) Soil Biol. Biochem. , vol.35 , pp. 453-461
    • Marschner, P.1    Kandeler, E.2    Marschner, B.3
  • 24
    • 0000326738 scopus 로고
    • Methane production and its fate in paddy fields. 2. Oxidation of methane and its coupled ferric-oxide reduction in subsoil
    • Miura Y, Watanabe A, Murase J, and Kimura M 1992: Methane production and its fate in paddy fields. 2. Oxidation of methane and its coupled ferric-oxide reduction in subsoil. Soil Sci. Plant Nutr., 38, 673-679
    • (1992) Soil Sci. Plant Nutr. , vol.38 , pp. 673-679
    • Miura, Y.1    Watanabe, A.2    Murase, J.3    Kimura, M.4
  • 25
    • 0027460328 scopus 로고
    • Profiling of complex microbial-populations by denaturing gradient gel- electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S ribosomal-RNA
    • Muyzer G, Dewaal EC, and Uitterlinden AG 1993: Profiling of complex microbial-populations by denaturing gradient gel- electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S ribosomal-RNA. Appl. Environ. Microbiol., 59, 695-700
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    Dewaal, E.C.2    Uitterlinden, A.G.3
  • 26
    • 0036949901 scopus 로고    scopus 로고
    • Comparison of microbial communities in percolating water from plow layer and subsoil layer estimated by phos-pholipid fatty acid (PLFA) analysis
    • Shimizu M, Hayashi M, Matsuya K, Murase J, and Kimura M 2002a: Comparison of microbial communities in percolating water from plow layer and subsoil layer estimated by phos-pholipid fatty acid (PLFA) analysis. Soil. Sci. Plant Nutr., 48, 877-881
    • (2002) Soil. Sci. Plant Nutr. , vol.48 , pp. 877-881
    • Shimizu, M.1    Hayashi, M.2    Matsuya, K.3    Murase, J.4    Kimura, M.5
  • 27
    • 0036691622 scopus 로고    scopus 로고
    • Comparison of phospholipid fatty acid composition in percolating water, floodwater, and the plow layer soil during the rice cultivation period in a Japanese paddy field
    • Shimizu M, Nakajima Y, Matsuya K, and Kimura M 2002b: Comparison of phospholipid fatty acid composition in percolating water, floodwater, and the plow layer soil during the rice cultivation period in a Japanese paddy field. Soil Sci. Plant Nutr., 48, 595-600
    • (2002) Soil Sci. Plant Nutr. , vol.48 , pp. 595-600
    • Shimizu, M.1    Nakajima, Y.2    Matsuya, K.3    Kimura, M.4
  • 28
    • 0035374573 scopus 로고    scopus 로고
    • Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir
    • Simek K, Pemthaler J, Weinbauer MG, Homak K, Dolan JR, Nedoma J, MaSfn M, and Amann R 2001: Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Appl. Environ. Microbiol., 67, 2723-2733
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2723-2733
    • Simek, K.1    Pemthaler, J.2    Weinbauer, M.G.3    Homak, K.4    Dolan, J.R.5    Nedoma, J.6    Masfn, M.7    Amann, R.8
  • 29
    • 1542298204 scopus 로고    scopus 로고
    • Retention and removal of pathogenic bacteria in wastewater percolating through porous media: A review
    • Stevik TK, Aa K, Ausland G, and Hanssen JF 2004: Retention and removal of pathogenic bacteria in wastewater percolating through porous media: A review. Water Res., 38, 1355-1367
    • (2004) Water Res. , vol.38 , pp. 1355-1367
    • Stevik, T.K.1    Aa, K.2    Ausland, G.3    Hanssen, J.F.4
  • 30
    • 0025903592 scopus 로고
    • Rapid method for direct extraction of DNA from soil and sediments
    • Tsai YL and Olson BH 1991: Rapid method for direct extraction of DNA from soil and sediments. Appl. Environ. Microbiol., 57, 1070-1074
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 1070-1074
    • Tsai, Y.L.1    Olson, B.H.2
  • 31
    • 0035544053 scopus 로고    scopus 로고
    • Contrasting bacteri- oplankton community composition and seasonal dynamics in two neighbouring hypertrophic freshwater lakes
    • Van der Gucht K, Sabbe K, De Meester L, Vloemans N, Zwart G, Gillis M, and Vyverman W 2001: Contrasting bacteri- oplankton community composition and seasonal dynamics in two neighbouring hypertrophic freshwater lakes. Environ. Microbiol., 3, 680-690
    • (2001) Environ. Microbiol , vol.3 , pp. 680-690
    • Van Der Gucht, K.1    Sabbe, K.2    De Meester, L.3    Vloemans, N.4    Zwart, G.5    Gillis, M.6    Vyverman, W.7
  • 32
    • 0032946688 scopus 로고    scopus 로고
    • Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: A review
    • Zelles L 1999: Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: A review. Biol. Fert. Soils, 29, 111-129
    • (1999) Biol. Fert. Soils , vol.29 , pp. 111-129
    • Zelles, L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.