Phospholipid fatty acid composition of microbiota in the percolating water from a rice paddy microcosm

Soil Science and Plant Nutrition

Volumn 47, Issue 3, 2001, Pages 533-545

  Kimura, Makoto ^a   Kishi, Hirokazu ^b   Okabe, Akiko ^b   Maie, Nagamitsu ^a  

^a NAGOYA UNIVERSITY   (Japan)

^b Nihon Tenganyaku Kenkyusyo   (Japan)

Author keywords

Exudate; Percolation; Phospholipid fatty acid; Rice field; Stress factor

Indexed keywords

EID: 0034809628     PISSN: 00380768     EISSN: 17470765     Source Type: Journal    
DOI: 10.1080/00380768.2001.10408417     Document Type: Article

References (23)

1. Amann, R.I., Ludwig, W. and Schleifer, K.-H. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev., 59: 143 – 169.
2. Aoki, S. 1996: http://aoki2.si.gunma-u.ac.jp/BlackBox/BlackBox.html.
3. Arao, T., Okano, S. and Kanamori, T. 1998. Analysis of the phospholipid fatty acids of upland light colored Andosol and the relationship among the size of biomass based on phospholipid fatty acid analysis, microscopical counts and chloroform fumigation-incubation. Jpn. J. Soil Sci. Plant Nutr., 69: 38 – 46. in Japanese with English summary.
4. Bai, Q., Gattinger, A. and Zelles, L. 2000. Characterization of microbial consortia in paddy rice soil by phospholipid analysis. Microb. Ecol., 39: 273 – 281.
5. Bligh, E.G. and Dyer, W.J. 1959. A rapid method of total lipid extraction and purification. Can. J. BioChem. Physiol., 37: 911 – 917.
6. Bossio, D.A and Scow, K.M. 1998. Impacts of carbon and flooding on soil microbial communities: Phospholipid fatty acid profiles and substrate utilization patterns. Microb. Ecol., 35: 265 – 278.
7. Guckert, J.B., Hood, M.A. and White, D.C. 1986. Phospholipid ester-linked fatty acid profile changes during nutrient deprivation of Vibrio cholerae: Increases in the trans/cis ratio and proportion of cyclopropyl fatty acids. Appl. Environ. Microbiol., 52: 794 – 801.
8. Haack, S.K., Garchow, H., Odelson, D.A., Forney, L.J. and Klug, M.J. 1994. Accuracy, reproducibility, and interpretation of fatty acid methyl ester profiles of model bacterial communities. Appl. Environ. Microbiol., 60: 2483 – 2493.
9. Kimura, M., Wada, H. and Takai, Y. 1979. The studies on the rhizosphere of paddy rice VI. The effects of anaerobiosis on microbes. Soil Sci. Plant Nutr., 25: 145 – 153.
10. Kimura, M., Yamashita, T. and Ikka, T. 1997. Bacterial numbers and biomass in leachate and in subsoil of a submerged paddy field. Soil Sci. Plant Nutr., 43: 575 – 585.
11. Kobo, K., Takai, Y., Wada, H. and Kagawa, H. 1970. Effects of percolation on the chemical and bacteriological condition of waterlogged paddy soil Part 1. Oxidation-reduction potential. J. Sci. Soil Manure, Jpn.: 41, 438 – 444. in Japanese.
12. Kondo, H., Fuzisawa, Y. and Takai, Y. 1982. Studies on the microbial ecology of paddy soils under water percolation Part 4. The effect of water percolated from the plow layer on the microflora of subsurface layer. Jpn. J. Soil Sci. Plant Nutr., 53: 415 – 419. in Japanese.
13. Kroppenstedt, R.M. 1992. “ The genus Nocardiopsis ”. In The Procaryotes, Edited by: Balows, A., Trüper, H.G., Dworkin, M., Harder, W. and Schleifer, K.H. Vol. 2, 1139 – 1156. Berlin: Springer.
14. Lochhead, A.G. 1940. Qualitative studies of soil micro-organisms. III. Influence of plant growth on the character of the bacterial flora. Can. J. Res., 18: 42 – 53.
15. Maie, N., Watanabe, A. and Kimura, M. 1997. Origin and properties of humus in the subsoil of irrigated rice paddies. I. Leaching of organic matter from plow layer soil and accumulation in subsoil. Soil Sci Plant Nutr., 43: 901 – 910.
16. Okabe, A., Oike, H., Toyota, K. and Kimura, M. 2000a. Comparison of phospholipid fatty acid composition in floodwater and plow layer soil during the rice cultivation period in a Japanese paddy field. Soil Sci. Plant Nutr., 46: 893 – 904.
17. Okabe, A., Toyota, K. and Kimura, M. 2000b. Seasonal variations of phospholipid fatty acid composition in the floodwater of a Japanese paddy field under a long-term fertilizer trial. Soil Sci. Plant Nutr., 46: 177 – 188.
18. Ratledge, C. and Wilkinson, S.G. 1988. Microbial Lipids, Vol. 1, 23 – 29. London: Academic Press. 117-457, 699-794.
19. Reichardt, W., Mascarina, G., Padre, B. and Doll, L. 1997. Microbial communities of continuously cropped, irrigated rice fields. Appl. Environ. Microbiol., 63: 233 – 238.
20. Takai, Y., Kagawa, H. and Kobo, K. 1968. Movement of bacteria by water percolation in submerged paddy soils Part 1. J. Sci. Soil Manure, Jpn.: 39, 219 – 223. in Japanese.
21. Wada, H., Tsuchiya, K. and Takai, Y. 1979. Leaching of substances from paddy soils Part 1. Leaching process of common inorganic substances. J. Sci. Soil Manure, Jpn.: 50, 511 – 516. in Japanese.
22. White, D.C., Davis, W.M., Nickels, J.S., Kind, J.D. and Bobbie, RJ. 1979. Determination of the sedimentary microbial biomass by extractable lipid phosphate. Oecologia, 40: 51 – 62.
23. Zelles, L. 1999. Fatty acid patterns of phospholipids and lipopolysaccharides in the characterization of microbial communities in soil: a review. Biol. Fertil Soils, 29: 111 – 129.