-
1
-
-
0018034154
-
Structural analysis and in vitro processing to p5S rRNA of a 9S RNA molecule isolated from an rne mutant of E. coli
-
Ghora, B.K. and Apirion, D. (1978) Structural analysis and in vitro processing to p5S rRNA of a 9S RNA molecule isolated from an rne mutant of E. coli. Cell 15, 1055-1066
-
(1978)
Cell
, vol.15
, pp. 1055-1066
-
-
Ghora, B.K.1
Apirion, D.2
-
2
-
-
0026447906
-
Cloning and analysis of the entire Escherichia coli ams gene, ams is identical to hmp1 and encodes a 114 kDa protein that migrates as a 180 kDa protein
-
Casaregola, S., Jacq, A., Laoudj, D., McGurk, G., Margarson, S., Tempete, M., Norris, V., and Holland, I.B. (1992) Cloning and analysis of the entire Escherichia coli ams gene, ams is identical to hmp1 and encodes a 114 kDa protein that migrates as a 180 kDa protein. J. Mol. Biol. 228, 30-40
-
(1992)
J. Mol. Biol.
, vol.228
, pp. 30-40
-
-
Casaregola, S.1
Jacq, A.2
Laoudj, D.3
McGurk, G.4
Margarson, S.5
Tempete, M.6
Norris, V.7
Holland, I.B.8
-
3
-
-
43949161496
-
Cloning and analysis of the entire Escherichia coli ams gene, ams is identical to hmp1 and encodes a 114 kDa protein that migrates as a 180 kDa protein
-
Casaregola, S., Jacq, A., Laoudj, D., McGurk, G., Margarson, S., Tempete, M., Norris, V, and Holland, I.B. (1994) Cloning and analysis of the entire Escherichia coli ams gene, ams is identical to hmp1 and encodes a 114 kDa protein that migrates as a 180 kDa protein. J. Mol. Biol. 238, 867
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 867
-
-
Casaregola, S.1
Jacq, A.2
Laoudj, D.3
McGurk, G.4
Margarson, S.5
Tempete, M.6
Norris, V.7
Holland, I.B.8
-
4
-
-
0018582283
-
RNase E, an RNA processing enzyme from Escherichia coli
-
Misra, T.K. and Apirion, D. (1979) RNase E, an RNA processing enzyme from Escherichia coli. J. Biol. Chem. 254, 11154-11159
-
(1979)
J. Biol. Chem.
, vol.254
, pp. 11154-11159
-
-
Misra, T.K.1
Apirion, D.2
-
5
-
-
0026008229
-
The Ams (altered mRNA stability) protein and ribonuclease E are encoded by the same structural gene of Escherichia coli
-
Babitzke, P. and Kushner, S.R. (1996) The Ams (altered mRNA stability) protein and ribonuclease E are encoded by the same structural gene of Escherichia coli. Proc. Natl Acad. Sci. USA 88, 1-5
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 1-5
-
-
Babitzke, P.1
Kushner, S.R.2
-
6
-
-
0025906534
-
Genetic studies of cleavage-initiated mRNA decay and processing of ribosomal 9S RNA show that the Escherichia coli ams and rne loci are the same
-
Melefors, O. and von Gabain, A. (1991) Genetic studies of cleavage-initiated mRNA decay and processing of ribosomal 9S RNA show that the Escherichia coli ams and rne loci are the same. Mol. Microbiol. 5, 857-864
-
(1991)
Mol. Microbiol.
, vol.5
, pp. 857-864
-
-
Melefors, O.1
Von Gabain, A.2
-
7
-
-
0025688893
-
RNase E, an endoribonuclease, has a general role in the chemical decay of Escherichia coli mRNA: Evidence that rne and ams are the same genetic locus
-
Mudd, E.A., Krisch, H.M., and Higgins, C.F. (1990) RNase E, an endoribonuclease, has a general role in the chemical decay of Escherichia coli mRNA: evidence that rne and ams are the same genetic locus. Mol. Microbiol. 4, 2127-2135
-
(1990)
Mol. Microbiol.
, vol.4
, pp. 2127-2135
-
-
Mudd, E.A.1
Krisch, H.M.2
Higgins, C.F.3
-
8
-
-
0025881986
-
The gene specifying RNase E (rne) and a gene affecting mRNA stability (ams) are the same gene
-
Taraseviciene, L., Miczak, A., and Apirion, D. (1991) The gene specifying RNase E (rne) and a gene affecting mRNA stability (ams) are the same gene. Mol. Microbiol. 5, 851-855
-
(1991)
Mol. Microbiol.
, vol.5
, pp. 851-855
-
-
Taraseviciene, L.1
Miczak, A.2
Apirion, D.3
-
9
-
-
0029962989
-
The N-terminal domain of the rne gene product has RNase E activity and is non-overlapping with the arginine-rich RNA-binding site
-
McDowall, K.J. and Cohen, S.N. (1996) The N-terminal domain of the rne gene product has RNase E activity and is non-overlapping with the arginine-rich RNA-binding site. J. Mol. Biol. 255, 349-355
-
(1996)
J. Mol. Biol.
, vol.255
, pp. 349-355
-
-
McDowall, K.J.1
Cohen, S.N.2
-
10
-
-
0027273009
-
The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli mre locus
-
McDowall, K.J., Hernandez, R.G., Lin-Chao, S., and Cohen, S.N. (1993) The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli mre locus. J. Bacteriol. 175, 4245-4249
-
(1993)
J. Bacteriol.
, vol.175
, pp. 4245-4249
-
-
McDowall, K.J.1
Hernandez, R.G.2
Lin-Chao, S.3
Cohen, S.N.4
-
11
-
-
0028840292
-
Evidence for an RNA binding region in the Escherichia coli processing endoribonuclease RNase E
-
Taraseviciene, L., Bjork, G.R., and Uhlin, B.E. (1995) Evidence for an RNA binding region in the Escherichia coli processing endoribonuclease RNase E. J. Biol. Chem. 270, 26391-26398
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 26391-26398
-
-
Taraseviciene, L.1
Bjork, G.R.2
Uhlin, B.E.3
-
12
-
-
0032578486
-
The endoribonucleolytic N-terminal half of Escherichia coli RNase E is evolutionarily conserved in Synechocystis sp. and other bacteria but not the C-terminal half, which is sufficient for degradosome assembly
-
Kaberdin, V.R., Miczak, A., Jakobsen, J.S., Lin-Chao, S., McDowall, K.J., and von Gabain, A. (1998) The endoribonucleolytic N-terminal half of Escherichia coli RNase E is evolutionarily conserved in Synechocystis sp. and other bacteria but not the C-terminal half, which is sufficient for degradosome assembly. Proc. Natl Acad. Sci. USA 95, 11637-11642
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 11637-11642
-
-
Kaberdin, V.R.1
Miczak, A.2
Jakobsen, J.S.3
Lin-Chao, S.4
McDowall, K.J.5
Von Gabain, A.6
-
13
-
-
3543037550
-
Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome
-
Vanzo, N.F., Li, Y.S., Py, B., Blum, E., Higgins, C.F., Raynal, L.C., Krisch, H.M., and Carpousis, A.J. (1998) Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome. Genes Dev. 12, 2770-2781
-
(1998)
Genes Dev.
, vol.12
, pp. 2770-2781
-
-
Vanzo, N.F.1
Li, Y.S.2
Py, B.3
Blum, E.4
Higgins, C.F.5
Raynal, L.C.6
Krisch, H.M.7
Carpousis, A.J.8
-
14
-
-
0033214259
-
Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3′ exonuclease and a DEAD-box RNA helicase
-
Coburn, G.A. and Mackie, G.A. (1999) Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3′ exonuclease and a DEAD-box RNA helicase. Genes Dev. 13, 2594-2603
-
(1999)
Genes Dev.
, vol.13
, pp. 2594-2603
-
-
Coburn, G.A.1
Mackie, G.A.2
-
15
-
-
0026559344
-
Specificity of Escherichia coli endoribonuclease RNase E: In vivo and in vitro analysis of mutants in a bacteriophage T4 mRNA processing site
-
Ehretsmann, C.P., Carpousis, A.J., and Krisch, H.M. (1992) Specificity of Escherichia coli endoribonuclease RNase E: in vivo and in vitro analysis of mutants in a bacteriophage T4 mRNA processing site. Genes Dev. 6, 149-159
-
(1992)
Genes Dev.
, vol.6
, pp. 149-159
-
-
Ehretsmann, C.P.1
Carpousis, A.J.2
Krisch, H.M.3
-
16
-
-
0028341449
-
A+U content rather than a particular nucleotide order determines the specificity of RNase E cleavage
-
McDowall, K.J., Lin-Chao, S., and Cohen, S.N. (1994) A+U content rather than a particular nucleotide order determines the specificity of RNase E cleavage. J. Biol. Chem. 269, 10790-10796
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 10790-10796
-
-
McDowall, K.J.1
Lin-Chao, S.2
Cohen, S.N.3
-
17
-
-
0028276973
-
Effects of nucleotide sequence on the specificity of rne-dependent and RNase E-mediated cleavages of RNA I encoded by the pBR322 plasmid
-
Lin-Chao, S., Wong, T.T., McDowall, K.J., and Cohen, S.N. (1994) Effects of nucleotide sequence on the specificity of rne-dependent and RNase E-mediated cleavages of RNA I encoded by the pBR322 plasmid. J. Biol. Chem. 269, 10797-10803
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 10797-10803
-
-
Lin-Chao, S.1
Wong, T.T.2
McDowall, K.J.3
Cohen, S.N.4
-
18
-
-
0025796969
-
Specific endonucleolytic cleavage of the mRNA for ribosomal protein S20 of Escherichia coli requires the product of the ams gene in vivo and in vitro
-
Mackie, G.A. (1991) Specific endonucleolytic cleavage of the mRNA for ribosomal protein S20 of Escherichia coli requires the product of the ams gene in vivo and in vitro. J. Bacteriol. 173, 2488-2497
-
(1991)
J. Bacteriol.
, vol.173
, pp. 2488-2497
-
-
Mackie, G.A.1
-
19
-
-
0020025040
-
Processing of bacteriophage T4 transfer RNAs. Structural analysis and in vitro processing of precursors that accumulate in RNase E-strains
-
Pragai, B. and Apirion, D. (1982) Processing of bacteriophage T4 transfer RNAs. Structural analysis and in vitro processing of precursors that accumulate in RNase E-strains. J. Mol. Biol. 154, 465-484
-
(1982)
J. Mol. Biol.
, vol.154
, pp. 465-484
-
-
Pragai, B.1
Apirion, D.2
-
20
-
-
0026557264
-
Secondary structure of the mRNA for ribosomeal protein S20
-
Mackie, G.A. (1992) Secondary structure of the mRNA for ribosomeal protein S20. J. Biol. Chem. 267, 1054-1061
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 1054-1061
-
-
Mackie, G.A.1
-
21
-
-
0027717298
-
The role of RNA structure in determining RNase E-dependent cleavage sites in the mRNA for ribosomal protein S20 in vitro
-
Mackie, G.A. and Genereaux, J.L. (1993) The role of RNA structure in determining RNase E-dependent cleavage sites in the mRNA for ribosomal protein S20 in vitro. J. Mol. Biol. 234, 998-1012
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 998-1012
-
-
Mackie, G.A.1
Genereaux, J.L.2
-
22
-
-
0024043391
-
In vivo and in vitro identity of site specific cleavages in the 5′ non-coding region of ompA and bal mRNAs in Escherichia coli
-
Nilsson, G., Lundberg, U., and von Gabain, A. (1988) In vivo and in vitro identity of site specific cleavages in the 5′ non-coding region of ompA and bal mRNAs in Escherichia coli. EMBO J. 7, 2269-2275
-
(1988)
EMBO J.
, vol.7
, pp. 2269-2275
-
-
Nilsson, G.1
Lundberg, U.2
Von Gabain, A.3
-
23
-
-
0027054379
-
Structural requirements for the processing of Escherichia coli 5S ribosomal RNA by RNase E in vitro
-
Cormack, R.S. and Mackie, G.A. (1992) Structural requirements for the processing of Escherichia coli 5S ribosomal RNA by RNase E in vitro. J. Mol. Biol. 228, 1078-1090
-
(1992)
J. Mol. Biol.
, vol.228
, pp. 1078-1090
-
-
Cormack, R.S.1
Mackie, G.A.2
-
24
-
-
0031031467
-
Modulation of the activity of RNase E in vitro by RNA sequences and secondary structures 5′ to cleavage sites
-
Mackie, G.A., Genereaux, J.L., and Masterman, S.K. (1997) Modulation of the activity of RNase E in vitro by RNA sequences and secondary structures 5′ to cleavage sites. J. Biol. Chem. 272, 609-616
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 609-616
-
-
Mackie, G.A.1
Genereaux, J.L.2
Masterman, S.K.3
-
25
-
-
0028987956
-
Site-specific RNase E cleavage of oligonucleotides and inhibition by stem-loops
-
McDowall, K.J., Kaberdin, V.R., Wu, S.-W., Cohen, S.N., and Lin-Chao, S. (1995) Site-specific RNase E cleavage of oligonucleotides and inhibition by stem-loops. Nature 374, 287-290
-
(1995)
Nature
, vol.374
, pp. 287-290
-
-
McDowall, K.J.1
Kaberdin, V.R.2
Wu, S.-W.3
Cohen, S.N.4
Lin-Chao, S.5
-
26
-
-
0021013526
-
The RNA moiety of ribonuclease P is the catalytic subunit of enzyme
-
Guerrier-Takada, C., Gardiner, K., Marsh, T., Pace, N., and Altman, S. (1983) The RNA moiety of ribonuclease P is the catalytic subunit of enzyme. Cell 35, 849-857
-
(1983)
Cell
, vol.35
, pp. 849-857
-
-
Guerrier-Takada, C.1
Gardiner, K.2
Marsh, T.3
Pace, N.4
Altman, S.5
-
27
-
-
0020788634
-
Identification of a precursor molecular for the RNA moiety of the processing enzyme RNase P
-
Gurevitz, M., Jain, S.K., and Apirion, D. (1983) Identification of a precursor molecular for the RNA moiety of the processing enzyme RNase P. Proc. Natl Acad. Sci. USA 80, 4450-4454
-
(1983)
Proc. Natl Acad. Sci. USA
, vol.80
, pp. 4450-4454
-
-
Gurevitz, M.1
Jain, S.K.2
Apirion, D.3
-
28
-
-
0003331562
-
Processing of transcription products of the gene encoding the RNA component of RNase P
-
Sakamoto, H., Kimura, N., and Shimura, Y. (1983) Processing of transcription products of the gene encoding the RNA component of RNase P. Proc. Natl Acad. Sci. USA 80, 6187-6191
-
(1983)
Proc. Natl Acad. Sci. USA
, vol.80
, pp. 6187-6191
-
-
Sakamoto, H.1
Kimura, N.2
Shimura, Y.3
-
29
-
-
0029295957
-
Processing of the precursor to the catalytic RNA subunit of RNase P from Escherichia coli
-
Lundberg, U. and Altman, S. (1995) Processing of the precursor to the catalytic RNA subunit of RNase P from Escherichia coli. RNA 1, 327-334
-
(1995)
RNA
, vol.1
, pp. 327-334
-
-
Lundberg, U.1
Altman, S.2
-
30
-
-
0029765533
-
Mutational analysis of RNA structures and sequences postulated to affect 3′ processing of M1 RNA, the RNA component of Escherichia coli RNase P
-
Kim, S., Kim, H., Park, I., and Lee, Y. (1996) Mutational analysis of RNA structures and sequences postulated to affect 3′ processing of M1 RNA, the RNA component of Escherichia coli RNase P. J. Biol. Chem. 271, 19330-19337
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 19330-19337
-
-
Kim, S.1
Kim, H.2
Park, I.3
Lee, Y.4
-
31
-
-
0033081246
-
In vitro analysis of processing at the 3′-end of precursors of Ml RNA, the catalytic subunit of Escherichia coli RNase P: Multiple pathways and steps for the processing
-
Kim, S., Sim, S., and Lee, Y. (1999) In vitro analysis of processing at the 3′-end of precursors of Ml RNA, the catalytic subunit of Escherichia coli RNase P: multiple pathways and steps for the processing. Nucleic Acids Res. 27, 895-901
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 895-901
-
-
Kim, S.1
Sim, S.2
Lee, Y.3
-
32
-
-
0037048524
-
3′-end processing of precursor Ml RNA by the N-terminal half of RNase E
-
Sim, S., Kim, K., and Lee, Y. (2002) 3′-end processing of precursor Ml RNA by the N-terminal half of RNase E. FEBS Lett. 529, 225-231
-
(2002)
FEBS Lett.
, vol.529
, pp. 225-231
-
-
Sim, S.1
Kim, K.2
Lee, Y.3
-
33
-
-
0035860370
-
Role of the sequence of the rne-dependent site in 3′ processing of M1 RNA, the catalytic component of Escherichia coli RNase P
-
Sim, S., Kim, S., and Lee, Y. (2001) Role of the sequence of the rne-dependent site in 3′ processing of M1 RNA, the catalytic component of Escherichia coli RNase P. FEBS Lett. 505, 291-295
-
(2001)
FEBS Lett.
, vol.505
, pp. 291-295
-
-
Sim, S.1
Kim, S.2
Lee, Y.3
-
34
-
-
0021943518
-
Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
-
Yanisch-Perron, C., Vieira, J., and Messing, J. (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33, 103-119
-
(1985)
Gene
, vol.33
, pp. 103-119
-
-
Yanisch-Perron, C.1
Vieira, J.2
Messing, J.3
-
35
-
-
0025283867
-
Use of T7 RNA polymerase to direct expression of cloned genes
-
Studier, F.W., Rosenberg, A.M., Dunn, J.J., and Dubendorff, J.W. (1990) Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol. 185, 60-89
-
(1990)
Methods Enzymol.
, vol.185
, pp. 60-89
-
-
Studier, F.W.1
Rosenberg, A.M.2
Dunn, J.J.3
Dubendorff, J.W.4
-
36
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook, J. and Russel, D.W. (2001) Molecular Cloning: A Laboratory Manual, 3rd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
(2001)
Molecular Cloning: A Laboratory Manual, 3rd Ed.
-
-
Sambrook, J.1
Russel, D.W.2
-
37
-
-
0034636985
-
Enhanced cleavage of RNA mediated by an interaction between substrates and the arginine-rich domain of E. coli ribonuclease E
-
Kaberdin, V.R., Walsh, A.P., Jakobsen, T., McDowall, K.J., and von Gabain, A. (2000) Enhanced cleavage of RNA mediated by an interaction between substrates and the arginine-rich domain of E. coli ribonuclease E. J. Mol. Biol. 301, 257-264
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 257-264
-
-
Kaberdin, V.R.1
Walsh, A.P.2
Jakobsen, T.3
McDowall, K.J.4
Von Gabain, A.5
-
38
-
-
0242395917
-
Probing the substrate specificity of Escherichia coli RNase E using a novel oligonucleotide-based assay
-
Kaberdin, V.R. (2003) Probing the substrate specificity of Escherichia coli RNase E using a novel oligonucleotide-based assay. Nucl. Acids Res. 31, 4710-4716
-
(2003)
Nucl. Acids Res.
, vol.31
, pp. 4710-4716
-
-
Kaberdin, V.R.1
-
39
-
-
0016232066
-
Catalysis, binding and enzyme-substrate complementarity
-
Fersht, A.R. (1974) Catalysis, binding and enzyme-substrate complementarity. Proc. R. Soc. Lond. B Biol. Sci. 187, 397-407
-
(1974)
Proc. R. Soc. Lond. B Biol. Sci.
, vol.187
, pp. 397-407
-
-
Fersht, A.R.1
|