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Volumn 59, Issue 2, 2005, Pages 257-265

Detecting the historical signature of key innovations using stochastic models of character evolution and cladogenesis

Author keywords

Aquilegia; Bayesian inference; Character mapping; Diversification rate; Macroevolution; Phylogeny

Indexed keywords

DIVERGENCE; EVOLUTION; PHYLOGENETICS; STOCHASTICITY;

EID: 14844362161     PISSN: 00143820     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.0014-3820.2005.tb00986.x     Document Type: Article
Times cited : (140)

References (44)
  • 1
    • 0034998592 scopus 로고    scopus 로고
    • Evolutionary rates and species diversity in flowering plants
    • Barraclough, T. G., and V. Savolainen. 2001. Evolutionary rates and species diversity in flowering plants. Evolution 55:677-683.
    • (2001) Evolution , vol.55 , pp. 677-683
    • Barraclough, T.G.1    Savolainen, V.2
  • 2
    • 0036959868 scopus 로고    scopus 로고
    • Whole-tree methods for detecting differential diversification rates
    • Chan, K. M. A., and B. R. Moore. 2002. Whole-tree methods for detecting differential diversification rates. Syst. Biol. 51:855-865.
    • (2002) Syst. Biol. , vol.51 , pp. 855-865
    • Chan, K.M.A.1    Moore, B.R.2
  • 3
    • 0036964964 scopus 로고    scopus 로고
    • Contingent predictability in evolution: Key traits and diversification
    • de Queiroz, A. 2002. Contingent predictability in evolution: key traits and diversification. Syst. Biol. 51:917-929.
    • (2002) Syst. Biol. , vol.51 , pp. 917-929
    • De Queiroz, A.1
  • 5
    • 0036021407 scopus 로고    scopus 로고
    • Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
    • Drummond, A. J., G. K. Nicholls, A. G. Rodrigo, and W. Solomon. 2002. Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics 161:1307-1320.
    • (2002) Genetics , vol.161 , pp. 1307-1320
    • Drummond, A.J.1    Nicholls, G.K.2    Rodrigo, A.G.3    Solomon, W.4
  • 6
    • 0026274453 scopus 로고
    • Escalation of plant defense: Do latex and resin canals spur plant diversification?
    • Farrell, B. D., D. E. Dussourd, and C. Mitter. 1991. Escalation of plant defense: Do latex and resin canals spur plant diversification? Am. Nat. 138:881-900.
    • (1991) Am. Nat. , vol.138 , pp. 881-900
    • Farrell, B.D.1    Dussourd, D.E.2    Mitter, C.3
  • 7
    • 0001641598 scopus 로고
    • Confidence limits on phylogenies with a molecular clock
    • Felsenstein, J. 1985. Confidence limits on phylogenies with a molecular clock. Syst. Zool. 34:152-161.
    • (1985) Syst. Zool. , vol.34 , pp. 152-161
    • Felsenstein, J.1
  • 9
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa, M., H. Kishino, and T. Yano. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 21:160-174.
    • (1985) J. Mol. Evol. , vol.21 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 10
    • 84972952101 scopus 로고
    • Key evolutionary innovations and their ecological mechanisms
    • Heard, S. B., and D. L. Hauser. 1995. Key evolutionary innovations and their ecological mechanisms. Hist. Biol. 10:151-173.
    • (1995) Hist. Biol. , vol.10 , pp. 151-173
    • Heard, S.B.1    Hauser, D.L.2
  • 11
    • 0026540732 scopus 로고
    • Using phylogenetic trees to study speciation and extinction
    • Hey, J. 1992. Using phylogenetic trees to study speciation and extinction. Evolution 46:627-640.
    • (1992) Evolution , vol.46 , pp. 627-640
    • Hey, J.1
  • 12
    • 0031418981 scopus 로고    scopus 로고
    • Floral nectar spurs and diversification
    • Hodges, S. A. 1997. Floral nectar spurs and diversification. International J. Plant Sci. 158(Suppl. 6):S81-S88.
    • (1997) International J. Plant Sci. , vol.158 , Issue.6 SUPPL.
    • Hodges, S.A.1
  • 13
    • 0028304839 scopus 로고
    • Columbines: A geographically widespread species flock
    • Hodges, S. A., and M. L. Arnold. 1994a. Columbines: a geographically widespread species flock. Proc. Natl. Acad. Sci. USA 91:5129-5132.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 5129-5132
    • Hodges, S.A.1    Arnold, M.L.2
  • 14
    • 0028223252 scopus 로고
    • Floral and ecological isolation between Aquilegia formosa and Aquilegia pubescens
    • _. 1994b. Floral and ecological isolation between Aquilegia formosa and Aquilegia pubescens. Proc. Natl. Acad. Sci. USA 91:2493-2496.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 2493-2496
  • 15
    • 0029531224 scopus 로고
    • Spurring plant diversification: Are floral nectar spurs a key innovation?
    • _. 1995. Spurring plant diversification: Are floral nectar spurs a key innovation? Proc. R. Soc. Lond. 262:343-348.
    • (1995) Proc. R. Soc. Lond. , vol.262 , pp. 343-348
  • 16
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck, J. P., and F. R. Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:745-755.
    • (2001) Bioinformatics , vol.17 , pp. 745-755
    • Huelsenbeck, J.P.1    Ronquist, F.R.2
  • 17
    • 0034733685 scopus 로고    scopus 로고
    • Accommodating phylogenetic uncertainty in evolutionary studies
    • Huelsenbeck, J. P., B. Rannala, and J. P. Masly. 2000. Accommodating phylogenetic uncertainty in evolutionary studies. Science 288:2349-2350.
    • (2000) Science , vol.288 , pp. 2349-2350
    • Huelsenbeck, J.P.1    Rannala, B.2    Masly, J.P.3
  • 18
    • 0038521713 scopus 로고    scopus 로고
    • Stochastic mapping of morphological characters
    • Huelsenbeck, J., R. Nielsen, and J. Bollback. 2003. Stochastic mapping of morphological characters. Syst. Biol. 52:131-158.
    • (2003) Syst. Biol. , vol.52 , pp. 131-158
    • Huelsenbeck, J.1    Nielsen, R.2    Bollback, J.3
  • 19
    • 0030618397 scopus 로고    scopus 로고
    • Long-tongued fly pollination and the evolution of floral spur length in the Disa draconis complex (Orchidaceae)
    • Johnson, S. D., and K. E. Steiner. 1997. Long-tongued fly pollination and the evolution of floral spur length in the Disa draconis complex (Orchidaceae). Evolution 51:45-53.
    • (1997) Evolution , vol.51 , pp. 45-53
    • Johnson, S.D.1    Steiner, K.E.2
  • 22
    • 0032906031 scopus 로고    scopus 로고
    • Bayesian phylogenetic inference via Markov chain Monte Carlo methods
    • Mau, B., M. Newton, and B. Larget. 1999. Bayesian phylogenetic inference via Markov chain Monte Carlo methods. Biometrics 55:1-12.
    • (1999) Biometrics , vol.55 , pp. 1-12
    • Mau, B.1    Newton, M.2    Larget, B.3
  • 23
    • 1642276441 scopus 로고    scopus 로고
    • A likelihood-based method for testing for nonstochastic variation of diversification rates in phylogenies
    • McConway, K. J., and H. J. Sims. 2004. A likelihood-based method for testing for nonstochastic variation of diversification rates in phylogenies. Evolution 58:12-23.
    • (2004) Evolution , vol.58 , pp. 12-23
    • McConway, K.J.1    Sims, H.J.2
  • 24
    • 0024197634 scopus 로고
    • The phylogenetic study of adaptive zones: Has phytophagy promoted insect diversification?
    • Mitter, C., B. Farrell, and B. Wiegmann. 1988. The phylogenetic study of adaptive zones: has phytophagy promoted insect diversification? Am. Nat. 132:107-128.
    • (1988) Am. Nat. , vol.132 , pp. 107-128
    • Mitter, C.1    Farrell, B.2    Wiegmann, B.3
  • 26
    • 0034997128 scopus 로고    scopus 로고
    • Inferring speciation rates from phylogenies
    • Nee, S. 2001. Inferring speciation rates from phylogenies. Evolution 55:661-668.
    • (2001) Evolution , vol.55 , pp. 661-668
    • Nee, S.1
  • 27
    • 0026756206 scopus 로고
    • Tempo and mode of evolution revealed from molecular phylogenies
    • Nee, S., A. O. Mooers, and P. H. Harvey. 1992. Tempo and mode of evolution revealed from molecular phylogenies. Proc. Natl. Acad. Sci. USA 89:8322-8326.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 8322-8326
    • Nee, S.1    Mooers, A.O.2    Harvey, P.H.3
  • 29
    • 0036804625 scopus 로고    scopus 로고
    • Mapping mutations on phylogenies
    • Nielsen, R. 2002. Mapping mutations on phylogenies. Syst. Biol. 51:729-739.
    • (2002) Syst. Biol. , vol.51 , pp. 729-739
    • Nielsen, R.1
  • 30
    • 0023808390 scopus 로고
    • The evolution of flowers with deep corolla tubes
    • Nilsson, L. A. 1988. The evolution of flowers with deep corolla tubes. Nature 334:147-149.
    • (1988) Nature , vol.334 , pp. 147-149
    • Nilsson, L.A.1
  • 31
    • 0030823492 scopus 로고    scopus 로고
    • Assessing temporal variations in diversification rates from phylogenies: Estimation and hypothesis testing
    • Paradis, E. 1997. Assessing temporal variations in diversification rates from phylogenies: estimation and hypothesis testing. Proc. R. Soc. Lond. B 264:1141-1147.
    • (1997) Proc. R. Soc. Lond. B , vol.264 , pp. 1141-1147
    • Paradis, E.1
  • 32
    • 0029818407 scopus 로고    scopus 로고
    • Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference
    • Rannala, B., and Z. Yang. 1996. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J. Mol. Evol. 43:304-311.
    • (1996) J. Mol. Evol. , vol.43 , pp. 304-311
    • Rannala, B.1    Yang, Z.2
  • 33
    • 0028184507 scopus 로고
    • Shifts in diversification rate with the origin of angiosperms
    • Sanderson, M. J., and M. J. Donoghue. 1994. Shifts in diversification rate with the origin of angiosperms. Science 264:1590-1593.
    • (1994) Science , vol.264 , pp. 1590-1593
    • Sanderson, M.J.1    Donoghue, M.J.2
  • 34
    • 0029668936 scopus 로고    scopus 로고
    • Reconstructing shifts in diversification on phylogenetic trees
    • _. 1996. Reconstructing shifts in diversification on phylogenetic trees. Trends Ecol. Evol. 11:15-20.
    • (1996) Trends Ecol. Evol. , vol.11 , pp. 15-20
  • 35
    • 1642398016 scopus 로고    scopus 로고
    • Floral symmetry affects speciation rates in angiosperms
    • Sargent, R. D. 2004. Floral symmetry affects speciation rates in angiosperms. Proc. R. Soc. Lond. B 271:603-608.
    • (2004) Proc. R. Soc. Lond. B , vol.271 , pp. 603-608
    • Sargent, R.D.1
  • 36
    • 0037363453 scopus 로고    scopus 로고
    • Nonstochastic variation of species-level diversification rates within angiosperms
    • Sims, H. J., and K. J. McConway. 2003. Nonstochastic variation of species-level diversification rates within angiosperms. Evolution 57:460-479.
    • (2003) Evolution , vol.57 , pp. 460-479
    • Sims, H.J.1    McConway, K.J.2
  • 37
    • 0024904359 scopus 로고
    • Testing the stochasticity of patterns of organismal diversity: An improved null model
    • Slowinski, J. B., and C. Guyer. 1989. Testing the stochasticity of patterns of organismal diversity: an improved null model. Am. Nat. 134(6):907-921.
    • (1989) Am. Nat. , vol.134 , Issue.6 , pp. 907-921
    • Slowinski, J.B.1    Guyer, C.2
  • 38
    • 0027137315 scopus 로고
    • Testing whether certain traits have caused amplified diversification: An improved method based on a model of random speciation and extinction
    • _. 1993. Testing whether certain traits have caused amplified diversification: an improved method based on a model of random speciation and extinction. Am. Nat. 142:1019-1024.
    • (1993) Am. Nat. , vol.142 , pp. 1019-1024
  • 39
    • 0036803223 scopus 로고    scopus 로고
    • Divergence time and evolutionary rate estimation with multilocus data
    • Thorne, J., and H. Kishino. 2002. Divergence time and evolutionary rate estimation with multilocus data. Syst. Biol. 51(5):689-702.
    • (2002) Syst. Biol. , vol.51 , Issue.5 , pp. 689-702
    • Thorne, J.1    Kishino, H.2
  • 40
    • 0344663951 scopus 로고    scopus 로고
    • The diversification of Halenia (Gentianaceae): Ecological opportunity versus key innovation
    • von Hagen, K. B., and J. W. Kadereit. 2003. The diversification of Halenia (Gentianaceae): ecological opportunity versus key innovation. Evolution 57:2507-2518.
    • (2003) Evolution , vol.57 , pp. 2507-2518
    • Von Hagen, K.B.1    Kadereit, J.W.2
  • 41
    • 0041843801 scopus 로고    scopus 로고
    • Molecular phylogenies link rates of evolution and speciation
    • Webster, A. J., R. J. H. Payne, and M. Pagel. 2003. Molecular phylogenies link rates of evolution and speciation. Science 301:478.
    • (2003) Science , vol.301 , pp. 478
    • Webster, A.J.1    Payne, R.J.H.2    Pagel, M.3
  • 42
    • 0029899576 scopus 로고    scopus 로고
    • Recognizing the forest for the trees: Testing temporal patterns of cladogenesis using a null model of stochastic diversification
    • Wollenberg, K., J. Arnold, and J. C. Avise. 1996. Recognizing the forest for the trees: testing temporal patterns of cladogenesis using a null model of stochastic diversification. Mol. Biol. Evol. 13:833-849.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 833-849
    • Wollenberg, K.1    Arnold, J.2    Avise, J.C.3
  • 43
    • 0030749810 scopus 로고    scopus 로고
    • Bayesian phylogenetic inference using DNA sequences: A Markov chain Monte Carlo method
    • Yang, Z., and B. Rannala. 1997. Bayesian phylogenetic inference using DNA sequences: a Markov chain Monte Carlo method. Mol. Biol. Evol. 14:717-724.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 717-724
    • Yang, Z.1    Rannala, B.2
  • 44
    • 0001778604 scopus 로고
    • A mathematical theory of evolution based on the conclusions of J. C. Willis
    • Yule, G. U. 1924. A mathematical theory of evolution based on the conclusions of J. C. Willis, F. R. S. Proc. R. Soc. Lond. B 213:21-87.
    • (1924) F. R. S. Proc. R. Soc. Lond. B , vol.213 , pp. 21-87
    • Yule, G.U.1


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