Nuclear envelopes from amphibian oocytes - From morphology to protein inventory

European Journal of Cell Biology

Volumn 84, Issue 2-3, 2005, Pages 151-162

  Scheer, Ulrich ^a   Dabauvalle, Marie Christine ^a   Krohne, Georg ^a   Peiman Zahedi, René ^b   Sickmann, Albert ^b  

^a UNIVERSITY OF WÜRZBURG   (Germany)

^b UNIVERSITY OF WÜRZBURG   (Germany)

Author keywords

Nuclear envelope; Nuclear pore complex; Proteomics; Xenopus oocyte

Indexed keywords

NUCLEAR PROTEIN; NUCLEOPORIN;

AMPHIBIA; CELL FUNCTION; CELL NUCLEUS MEMBRANE; CELL STRUCTURE; HISTORY OF MEDICINE; ISOLATION PROCEDURE; MAMMAL CELL; MOLECULAR WEIGHT; NONHUMAN; NUCLEAR PORE COMPLEX; OOCYTE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; REVIEW; XENOPUS;

AMPHIBIA; MAMMALIA;

EID: 14844357390     PISSN: 01719335     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ejcb.2004.12.001     Document Type: Review

References (63)

1. C.W. Akey M. Radermacher Architecture of the Xenopus nuclear pore complex revealed by three-dimensional cryo-electron microscopy J. Cell Biol. 122 1993 1-19
2. T.D. Allen J.M. Cronshaw S. Bagley E. Kiseleva M.W. Goldberg The nuclear pore complex: Mediator of translocation between nucleus and cytoplasm J. Cell Sci. 113 2000 1651-1659
3. J. Arlucea R. Andrade R. Alonso J. Arechaga The nuclear basket of the nuclear pore complex is part of a higher-order filamentous network that is related to chromatin J. Struct. Biol. 124 1998 51-58
4. G.F. Bahr Determination of the dry mass of small biological objects by quantitative electron microscopy In: V. Neuhoff (Eds.) Micromethods in Molecular Biology 1973 Springer Berlin 257-284
5. K. Biemann Mass spectrometry of peptides and proteins Annu. Rev. Biochem. 61 1992 977-1010
6. V.C. Cordes S. Reidenbach A. Köhler N. Stuurman R. van Driel W.W. Franke Intranuclear filaments containing a nuclear pore complex protein J. Cell Biol. 123 1993 1333-1344
7. V.C. Cordes S. Reidenbach H.-R. Rackwitz W.W. Franke Identification of protein p270/Tpr as a constitutive component of the nuclear pore complex-attached intranuclear filaments J. Cell Biol. 136 1997 515-529
8. J.M. Cronshaw A.N. Krutchinsky W. Zhang B.T. Chait M.J. Matunis Proteomic analysis of the mammalian nuclear pore complex J. Cell Biol. 158 2002 915-927
9. M.-C. Dabauvalle R. Benavente N. Chaly Monoclonal antibodies to a Mr 68000 pore complex glycoprotein interfere with nuclear protein uptake in Xenopus oocytes Chromosoma 97 1988 193-197
10. Dabauvalle, M.-C., Wilken, N., Ewald, A., Kuhbier, A., Senécal, J.-L., Scheer, U., 1994. Nuclear pore complex structure analyzed by immunogold EM with human autoantibodies. Proceedings of the13th International Congress on Electron Microscopy (Paris), vol. 3A. Les Editions de Physique, Les Ulis, France, pp. 475-478.
11. D.P. Denning S.S. Patel V. Uversky A.L. Fink M. Rexach Disorder in the nuclear pore complex: The FG repeat regions of nucleoporins are natively unfolded Proc. Natl. Acad. Sci. USA 100 2003 2450-2455
12. M. Dreger L. Bengtsson T. Schöneberg H. Otto F. Hucho Nuclear envelope proteomics: Novel integral membrane proteins of the inner nuclear membrane Proc. Natl. Acad. Sci. USA 98 2001 11943-11948
13. B. Fahrenkrog U. Aebi The nuclear pore complex: Nucleocytoplasmic transport and beyond Nat. Rev. Mol. Cell Biol. 4 2003 757-766
14. M. Fornerod J. van Deursen S. Van Baal A. Reynolds D. Davis K.G. Murti J. Fransen G. Grosveld The human homologue of yeast CRM1 is in a dynamic subcomplex with CAN/Nup214 and a novel nuclear pore component Nup88 EMBO J. 16 1997 807-816
15. W.W. Franke Isolated nuclear membranes J. Cell Biol. 31 1966 619-623
16. W.W. Franke Zur Feinstruktur isolierter Kernmembranen aus tierischen Zellen Z. Zellforsch. 80 1967 585-593
17. W.W. Franke On the universality of nuclear pore complex structure Z. Zellforsch. 105 1970 405-429
18. W.W. Franke Structure, biochemistry, and functions of the nuclear envelope Int. Rev. Cytol. Suppl. 4 1974 71-236
19. W.W. Franke Nuclear envelopes. Structure and biochemistry of the nuclear envelope Philos. Trans. R. Soc. London B Biol. Sci. 268 1974 67-93
20. W.W. Franke Structure and function of nuclear membranes Biochem. Soc. Symp. 42 1977 125-135
21. W.W. Franke U. Scheer The ultrastructure of the nuclear envelope of amphibian oocytes: A reinvestigation. I. The mature oocyte J. Ultrastruct. Res. 30 1970 288-316
22. W.W. Franke U. Scheer The ultrastructure of the nuclear envelope of amphibian oocytes: A reinvestigation. II. The immature oocyte and dynamic aspects J. Ultrastruct. Res. 30 1970 317-327
23. W.W. Franke U. Scheer Structures and functions of the nuclear envelope In: H. Busch (Eds.) The Cell Nucleus Vol. 1 1974 Academic Press New York 219-347
24. W.W. Franke U. Scheer G. Krohne E.-D. Jarasch The nuclear envelope and the architecture of the nuclear periphery J. Cell Biol. 91 1981 39s-50s
25. J.G. Gall Octagonal nuclear pores J. Cell Biol. 32 1967 391-399
26. J.G. Gall Z. Wu C. Murphy H. Gao Structure in the amphibian germinal vesicle Exp. Cell Res. 296 2004 28-34
27. M.W. Goldberg T.D. Allen The nuclear pore complex three-dimensional surface structure revealed by field emission, in-lens scanning electron microscopy with underlying structure uncovered by proteolysis J. Cell Sci. 106 1993 261-274
28. M.W. Goldberg T.D. Allen The nuclear pore complex and lamina: Three-dimensional structures and interactions determined by field emission in-lens scanning electron microscopy J. Mol. Biol. 257 1996 848-865
29. J.E. Hinshaw B.O. Carragher R.A. Milligan Architecture and design of the nuclear pore complex Cell 69 1992 1133-1141
30. W. Hofmann B. Reichart A. Ewald E. Müller I. Schmitt R.H. Stauber F. Lottspeich B.M. Jockusch U. Scheer J. Hauber M.-C. Dabauvalle Cofactor requirements for nuclear export of Rev response element (RRE)- and constitutive transport element (CTE)-containing retroviral RNAs: An unexpected role for actin J. Cell Biol. 152 2001 895-910
31. M. Jarnik U. Aebi Toward a more complete 3-D structure of the nuclear pore complex J. Struct. Biol. 107 1991 291-308
32. J. Kartenbeck H. Zentgraf U. Scheer W.W. Franke The nuclear envelope in freeze-etching Adv. Anat. Embryol. Cell Biol. 45 1971 1-55
33. E. Kiseleva T.D. Allen S. Rutherford M. Bucci S.R. Wente M.W. Goldberg Yeast nuclear pore complexes have a cytoplasmic ring and internal filaments J. Struct. Biol. 145 2004 272-288
34. J. Klose Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals Humangenetik 26 1975 231-243
35. G. Krohne W.W. Franke U. Scheer The major polypeptides of the nuclear pore complex Exp. Cell Res. 116 1978 85-102
36. G. Krohne R. Benavente U. Scheer M.-C. Dabauvalle The nuclear lamina in Heidelberg and Würzburg a personal view Eur. J. Cell Biol. 84 2005
37. D.E. Macfarlane Use of benzyldimethyl-n-hexadecylammonium chloride ("16-BAC"), a cationic detergent, in an acidic polyacrylamide gel electrophoresis system to detect base labile protein methylation in intact cells Anal. Biochem. 132 1983 231-235
38. D.E. Macfarlane Two dimensional benzyldimethyl-n-hexadecylammonium chloride-sodium dodecyl sulfate preparative polyacrylamide gel electrophoresis: A high capacity high resolution technique for the purification of proteins from complex mixtures Anal. Biochem. 176 1989 457-463
39. R.R. Miller D.J. Forbes Purification of the vertebrate nuclear pore complex by biochemical criteria Traffic 1 2000 941-951
40. R. Müller U. Scheer Klangspektrographische Untersuchungen der Lautäusserung beim Krallenfrosch, Xenopus laevis Experientia 26 1970 435-436
41. P.H. O'Farrell High resolution two-dimensional electrophoresis of proteins J. Biol. Chem. 250 1975 4007-4021
42. N. Panté U. Aebi Molecular dissection of the nuclear pore complex Crit. Rev. Biochem. Mol. Biol. 31 1996 153-199
43. R. Reichelt A. Holzenburg E.L. Buhle M. Jarnik A. Engel U. Aebi Correlation between structure and mass distribution of the nuclear pore complex and of distinct pore complex components J. Cell Biol. 110 1990 883-894
44. M.P. Rout J.D. Aitchison The nuclear pore complex as a transport machinery J. Biol. Chem. 276 2001 16593-16596
45. M.P. Rout S. Wente Pores for thought: Nuclear pore complex proteins Trends Cell Biol. 4 1994 357-365
46. M.P. Rout J.D. Aitchison A. Suprapto K. Hjertaas Y. Zhao B.T. Chait The yeast nuclear pore complex composition, architecture, and transport mechanism J. Cell Biol. 148 2000 635-651
47. M.P. Rout J.D. Aitchison M.O. Magnasco B.T. Chait Virtual gating and nuclear transport the hole picture Trends Cell Biol. 13 2003 622-628
48. U. Scheer The ultrastructure of the nuclear envelope of amphibian oocytes. IV. On the chemical nature of the nuclear pore complex material Z. Zellforsch. 127 1972 127-148
49. U. Scheer Nuclear pore flow rate of ribosomal RNA and chain growth rate of its precursor during oogenesis of Xenopus laevis Dev. Biol. 30 1973 13-28
50. U. Scheer M.-C. Dabauvalle Functional organization of the amphibian oocyte nucleus In; L.W. Browder (Eds.) Developmental Biology. Oogenesis Vol. 1 1985 Plenum Press New York 385-430
51. U. Scheer W.W. Franke Negative staining and adenosine triphosphatase activity of annulate lamellae of newt oocytes J. Cell Biol. 42 1969 519-533
52. U. Scheer H. Hinssen W.W. Franke B.M. Jockusch Microinjection of actin-binding proteins and actin antibodies demonstrates involvement of nuclear actin in transcription of lampbrush chromosomes Cell 39 1984 111-122
53. E.C. Schirmer L. Florens T. Guan J.R. Yates L. Gerace Nuclear membrane proteins with potential disease links found by subtractive proteomics Science 301 2003 1380-1382
54. A. Shevchenko M. Wilm O. Vorm M. Mann Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels Anal. Chem. 68 1996 850-858
55. A. Sickmann M. Mreyen H.E. Meyer Mass spectrometry-a key technology in proteome research Adv. Biochem. Eng. Biotechnol. 83 2003 141-176
56. D. Stoffler B. Fahrenkrog U. Aebi The nuclear pore complex: From molecular architecture to functional dynamics Curr. Opin. Cell Biol. 11 1999 391-401
57. M. Suntharalingam S.R. Wente Peering through the pore nuclear pore: Complex structure, assembly, and function Dev. Cell 4 2003 775-789
58. K. Weis Regulating access to the genome: Nucleocytoplasmic transport throughout the cell cycle Cell 112 2003 441-451
59. N. Wilken U. Kossner J.-L. Senécal U. Scheer M.-C. Dabauvalle Nup180, a novel nuclear pore complex protein localizing to the cytoplasmic ring and associated fibrils J. Cell Biol. 123 1993 1345-1354
60. N. Wilken J.-L. Senécal U. Scheer M.-C. Dabauvalle Localization of the Ran-GTP binding protein RanBP2 at the cytoplasmic side of the nuclear pore complex Eur. J. Cell Biol. 68 1995 211-219
61. M. Wilm A. Shevchenko T. Houthaeve S. Breit L. Schweigerer T. Fotsis M. Mann Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry Nature 379 1996 466-469
62. Q. Yang M.P. Rout C.W. Akey Three-dimensional architecture of the isolated yeast nuclear pore complex: Functional and evolutionary implications Mol. Cell 1 1998 223-234
63. J.R. Yates III J.K. Eng A.L. McCormack D. Schlieltz Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database Anal. Chem. 67 1995 1426-1436