-
1
-
-
0028675028
-
A DNA enzyme that cleaves RNA
-
Breaker, R. R., and Joyce, G. F. (1994) A DNA enzyme that cleaves RNA, Chem. Biol. 1, 223-229.
-
(1994)
Chem. Biol.
, vol.1
, pp. 223-229
-
-
Breaker, R.R.1
Joyce, G.F.2
-
2
-
-
0028983570
-
2+-dependent RNA phosphoesterase activity
-
2+-dependent RNA phosphoesterase activity, Chem. Biol. 2, 655-660.
-
(1995)
Chem. Biol.
, vol.2
, pp. 655-660
-
-
Breaker, R.R.1
Joyce, G.F.2
-
5
-
-
0031215119
-
Evidence for the metal-cofactor independence of an RNA phosphodiester-cleaving DNA enzyme
-
Geyer, C. R., and Sen, D. (1997) Evidence for the metal-cofactor independence of an RNA phosphodiester-cleaving DNA enzyme. Chem. Biol. 4, 579-593.
-
(1997)
Chem. Biol.
, vol.4
, pp. 579-593
-
-
Geyer, C.R.1
Sen, D.2
-
6
-
-
0032568656
-
An amino acid as a cofactor for a catalytic polynucleotide
-
Roth, A., and Breaker, R. R. (1998) An amino acid as a cofactor for a catalytic polynucleotide, Proc. Natl. Acad. Sci. U.S.A. 95, 6027-6031.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 6027-6031
-
-
Roth, A.1
Breaker, R.R.2
-
7
-
-
0034650291
-
In vitro selection and characterization of a highly efficient Zn(II)-dependent RNA-cleaving deoxyribozyme
-
Li, J., Zheng, W., Kwon, A. H., and Lu, Y. (2000) In vitro selection and characterization of a highly efficient Zn(II)-dependent RNA-cleaving deoxyribozyme, Nucleic Acids Res. 28, 481-488.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 481-488
-
-
Li, J.1
Zheng, W.2
Kwon, A.H.3
Lu, Y.4
-
8
-
-
0035914482
-
A new and efficient DNA enzyme for the sequence-specific cleavage of RNA
-
Feldman, A. R., and Sen, D. (2001) A new and efficient DNA enzyme for the sequence-specific cleavage of RNA, J. Mol. Biol. 313, 283-294.
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 283-294
-
-
Feldman, A.R.1
Sen, D.2
-
9
-
-
0037189886
-
Toward an RNaseA Mimic: A DNAzyme with Imidazoles and Cationic Amines
-
Lermer, L., Roupioz, Y., Ting, R., and Perrin, D. M. (2002) Toward an RNaseA Mimic: A DNAzyme with Imidazoles and Cationic Amines, J. Am. Chem. Soc. 124, 9960-9961.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 9960-9961
-
-
Lermer, L.1
Roupioz, Y.2
Ting, R.3
Perrin, D.M.4
-
10
-
-
1142281951
-
Dinucleotide junction cleavage versatility of 8-17 deoxyribozyme
-
Cruz, R. P. G., Withers, J. W., and Li, Y. (2004) Dinucleotide junction cleavage versatility of 8-17 deoxyribozyme. Chem. Biol. 11, 57-67.
-
(2004)
Chem. Biol.
, vol.11
, pp. 57-67
-
-
Cruz, R.P.G.1
Withers, J.W.2
Li, Y.3
-
11
-
-
0030482173
-
In vitro selection of self-cleaving DNAs
-
Carmi, N., Shultz, L. A., and Breaker, R. R. (1996) In vitro selection of self-cleaving DNAs, Chem. Biol. 3, 1039-1046.
-
(1996)
Chem. Biol.
, vol.3
, pp. 1039-1046
-
-
Carmi, N.1
Shultz, L.A.2
Breaker, R.R.3
-
12
-
-
0032478096
-
Cleaving DNA with DNA
-
Carmi, N., Balkhi, S. R., and Breaker, R. R. (1998) Cleaving DNA with DNA, Proc. Natl. Acad. Sci. U.S.A. 95, 2233-2237.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 2233-2237
-
-
Carmi, N.1
Balkhi, S.R.2
Breaker, R.R.3
-
14
-
-
0036235747
-
Sequence diversity, metal specificity, and catalytic proficiency of metal-dependent phosphorylating DNA enzymes
-
Wang, W., Billen, L. P., and Li, Y. (2002) Sequence diversity, metal specificity, and catalytic proficiency of metal-dependent phosphorylating DNA enzymes, Chem. Biol. 9, 507-517.
-
(2002)
Chem. Biol.
, vol.9
, pp. 507-517
-
-
Wang, W.1
Billen, L.P.2
Li, Y.3
-
15
-
-
0034696594
-
Capping DNA with DNA
-
Li, Y., Liu, Y., and Breaker, R. R. (2000) Capping DNA with DNA, Biochemistry 39, 3106-3114.
-
(2000)
Biochemistry
, vol.39
, pp. 3106-3114
-
-
Li, Y.1
Liu, Y.2
Breaker, R.R.3
-
16
-
-
0029037713
-
A DNA metalloenzyme with DNA ligase activity
-
Cuenoud, B., and Szostak, J. W. (1995) A DNA metalloenzyme with DNA ligase activity, Nature 375, 611-614.
-
(1995)
Nature
, vol.375
, pp. 611-614
-
-
Cuenoud, B.1
Szostak, J.W.2
-
17
-
-
0034840733
-
Selection of deoxyribozyme ligases that catalyze the formation of an unnatural internucleotide linkage
-
Levy, M., and Ellington, A. D. (2001) Selection of deoxyribozyme ligases that catalyze the formation of an unnatural internucleotide linkage, Bioorg. Med. Chem. 9, 2581-2587.
-
(2001)
Bioorg. Med. Chem.
, vol.9
, pp. 2581-2587
-
-
Levy, M.1
Ellington, A.D.2
-
18
-
-
1642332434
-
Ligating DNA with DNA
-
Sreedhara, A., Li, Y., and Breaker, R. R. (2004) Ligating DNA with DNA, J. Am. Chem. Soc. 126, 3454-3460.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 3454-3460
-
-
Sreedhara, A.1
Li, Y.2
Breaker, R.R.3
-
19
-
-
0037617490
-
In vitro evolution of an RNA-cleaving DNA enzyme into an RNA ligase switches the selectivity from 3′-5′ to 2′-5′
-
Flynn-Charlebois, A., Prior, T. K., Hoadley, K. A., and Silverman, S. K. (2003) In vitro evolution of an RNA-cleaving DNA enzyme into an RNA ligase switches the selectivity from 3′-5′ to 2′-5′, J. Am. Chem. Soc. 125, 5346-5350.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 5346-5350
-
-
Flynn-Charlebois, A.1
Prior, T.K.2
Hoadley, K.A.3
Silverman, S.K.4
-
20
-
-
0037420377
-
Deoxyribozymes with 2′-5′ RNA ligase activity
-
Flynn-Charlebois, A., Wang, Y., Prior, T. K., Rashid, I., Hoadley, K. A., Coppins, R. L., Wolf, A. C., and Silverman, S. K. (2003) Deoxyribozymes with 2′-5′ RNA ligase activity, J. Am. Chem. Soc. 125, 2444-2454.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 2444-2454
-
-
Flynn-Charlebois, A.1
Wang, Y.2
Prior, T.K.3
Rashid, I.4
Hoadley, K.A.5
Coppins, R.L.6
Wolf, A.C.7
Silverman, S.K.8
-
21
-
-
0034608808
-
A DNA enzyme with N-glycosylase activity
-
Sheppard, T. L., Ordoukhanian, P., and Joyce, G. F. (2000) A DNA enzyme with N-glycosylase activity, Proc. Natl. Acad. Sci. U.S.A. 97, 7802-7807.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 7802-7807
-
-
Sheppard, T.L.1
Ordoukhanian, P.2
Joyce, G.F.3
-
22
-
-
0029746712
-
A catalytic DNA for porphyrin metalation
-
Li, Y., and Sen, D. (1996) A catalytic DNA for porphyrin metalation, Nat. Struct. Biol. 3, 743-747.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 743-747
-
-
Li, Y.1
Sen, D.2
-
23
-
-
0037438394
-
An efficient RNA-cleaving DNA enzyme that synchronizes catalysis with fluorescence signaling
-
Mei, S. H., Liu, Z., Brennan, J. D., and Li, Y. (2003) An efficient RNA-cleaving DNA enzyme that synchronizes catalysis with fluorescence signaling, J. Am. Chem. Soc. 125, 412-420.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 412-420
-
-
Mei, S.H.1
Liu, Z.2
Brennan, J.D.3
Li, Y.4
-
24
-
-
0037870470
-
Assemblage of signaling DNA enzymes with intriguing metal-ion specificities and pH dependences
-
Liu, Z., Mei, S. H., Brennan, J. D., and Li, Y. (2003) Assemblage of signaling DNA enzymes with intriguing metal-ion specificities and pH dependences, J. Am. Chem. Soc. 125, 7539-7545.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 7539-7545
-
-
Liu, Z.1
Mei, S.H.2
Brennan, J.D.3
Li, Y.4
-
25
-
-
0034715471
-
A Highly Sensitive and Selective Catalytic DNA Biosensor for Lead Ions
-
Li, J., and Lu, Y. (2000) A Highly Sensitive and Selective Catalytic DNA Biosensor for Lead Ions, J. Am. Chem. Soc. 122, 10466-10467.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 10466-10467
-
-
Li, J.1
Lu, Y.2
-
26
-
-
0034255112
-
Homogeneous assays based on deoxyribozyme catalysis
-
Stojanovic, M. N., de Prada, P., and Landry, D. W. (2000) Homogeneous assays based on deoxyribozyme catalysis, Nucleic Acids Res. 28, 2915-2918.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 2915-2918
-
-
Stojanovic, M.N.1
De Prada, P.2
Landry, D.W.3
-
28
-
-
0038210243
-
Deoxyribozymes that synthesize branched and lariat RNA
-
Wang, Y., and Silverman, S. K. (2003) Deoxyribozymes that synthesize branched and lariat RNA, J. Am. Chem. Soc. 125, 6880-6881.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 6880-6881
-
-
Wang, Y.1
Silverman, S.K.2
-
29
-
-
1142281948
-
Breaking Up is Easy to Do (If You're a DNA Enzyme that Cleaves RNA)
-
Silverman, S. K. (2004) Breaking Up is Easy to Do (If You're a DNA Enzyme that Cleaves RNA), Chem. Biol. 11, 7-8.
-
(2004)
Chem. Biol.
, vol.11
, pp. 7-8
-
-
Silverman, S.K.1
-
30
-
-
0029820625
-
Crystal structure of a group I ribozyme domain: Principles of RNA packing
-
Cate, J. H., Gooding, A. R., Podell, E., Zhou, K., Golden, B. L., Kundrot, C. E., Cech, T. R., and Doudna, J. A. (1996) Crystal structure of a group I ribozyme domain: principles of RNA packing, Science 273, 1678-1685.
-
(1996)
Science
, vol.273
, pp. 1678-1685
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.4
Golden, B.L.5
Kundrot, C.E.6
Cech, T.R.7
Doudna, J.A.8
-
31
-
-
0032497521
-
Crystal structure of a hepatitis delta virus ribozyme
-
Ferre-D'Amare, A. R., Zhou, K., and Doudna, J. A. (1998) Crystal structure of a hepatitis delta virus ribozyme, Nature 395, 567-574.
-
(1998)
Nature
, vol.395
, pp. 567-574
-
-
Ferre-D'Amare, A.R.1
Zhou, K.2
Doudna, J.A.3
-
32
-
-
0035848837
-
Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis
-
Rupert, P. B., and Ferre-D'Amare, A. R. (2001) Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis, Nature 410, 780-786.
-
(2001)
Nature
, vol.410
, pp. 780-786
-
-
Rupert, P.B.1
Ferre-D'Amare, A.R.2
-
33
-
-
0036818437
-
Making AppDNA using T4 DNA ligase
-
Chiuman, W., and Li, Y. (2002) Making AppDNA using T4 DNA ligase, Bioorg. Chem. 30, 332-349.
-
(2002)
Bioorg. Chem.
, vol.30
, pp. 332-349
-
-
Chiuman, W.1
Li, Y.2
-
34
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction, Nucleic Acids Res. 31, 3406-3415.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
35
-
-
0028124128
-
In vitro evolution of new ribozymes with polynucleotide kinase activity
-
Lorsch, J. R., and Szostak, J. W. (1994) In vitro evolution of new ribozymes with polynucleotide kinase activity, Nature 371, 31-36.
-
(1994)
Nature
, vol.371
, pp. 31-36
-
-
Lorsch, J.R.1
Szostak, J.W.2
-
36
-
-
0028965943
-
A DNA aptamer that binds adenosine and ATP
-
Huizenga, D. E., and Szostak, J. W. (1995) A DNA aptamer that binds adenosine and ATP, Biochemistry 34, 656-665.
-
(1995)
Biochemistry
, vol.34
, pp. 656-665
-
-
Huizenga, D.E.1
Szostak, J.W.2
-
37
-
-
0031279971
-
Structural basis of DNA folding and recognition in an AMP-DNA aptamer complex: Distinct architectures but common recognition motifs for DNA and RNA aptamers complexed to AMP
-
Lin, C. H., and Patel, D. J. (1997) Structural basis of DNA folding and recognition in an AMP-DNA aptamer complex: distinct architectures but common recognition motifs for DNA and RNA aptamers complexed to AMP, Chem. Biol. 4, 817-832.
-
(1997)
Chem. Biol.
, vol.4
, pp. 817-832
-
-
Lin, C.H.1
Patel, D.J.2
-
38
-
-
0030954291
-
Toward an efficient DNAzyme
-
Li, Y., and Sen, D. (1997) Toward an efficient DNAzyme, Biochemistry 36, 5589-5599.
-
(1997)
Biochemistry
, vol.36
, pp. 5589-5599
-
-
Li, Y.1
Sen, D.2
-
39
-
-
0347089036
-
A deoxyribozyme that harnesses light to repair thymine dimers in DNA
-
Chinnapen, D. J., and Sen, D. (2004) A deoxyribozyme that harnesses light to repair thymine dimers in DNA, Proc. Natl. Acad. Sci. U.S.A. 101, 65-69.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 65-69
-
-
Chinnapen, D.J.1
Sen, D.2
-
40
-
-
0037015034
-
Isolation of high-affinity GTP aptamers from partially structured RNA libraries
-
Davis, J. H., and Szostak, J. W. (2002) Isolation of high-affinity GTP aptamers from partially structured RNA libraries, Proc. Natl. Acad. Sci. U.S.A. 99, 11616-11621.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 11616-11621
-
-
Davis, J.H.1
Szostak, J.W.2
-
41
-
-
3042549466
-
A novel strategy for selection of allosteric ribozymes yields Ribo-Reporter™ sensors for caffeine and aspartame
-
Ferguson, A., Boomer, R. M., Kurz, M., Keene, S. C., Diener, J. L., Keefe, A. D., Wilson, C., and Cload, S. T. (2004) A novel strategy for selection of allosteric ribozymes yields Ribo-Reporter™ sensors for caffeine and aspartame, Nucleic Acids Res. 32, 1756-1766.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1756-1766
-
-
Ferguson, A.1
Boomer, R.M.2
Kurz, M.3
Keene, S.C.4
Diener, J.L.5
Keefe, A.D.6
Wilson, C.A.7
Cload, S.T.8
|