Seq2Struct: A resource for establishing sequence-structure links

Bioinformatics

Volumn 21, Issue 4, 2005, Pages 551-553

  Via, Allegra ^a   Zanzoni, Andreas ^a   Helmer Citterich, Manuela ^a  

^a UNIVERSITY OF ROME TOR VERGATA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CLASSIFICATION; COMPUTER INTERFACE; COMPUTER PROGRAM; EMBL NUCLEOTIDE SEQUENCE DATABASE; INTERNET; ONLINE SYSTEM; PRIORITY JOURNAL; PROTEIN DATA BANK; PROTEIN DATABASE; PROTEIN DOMAIN; PROTEIN STRUCTURE; RELIABILITY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE DATABASE; STRUCTURE ANALYSIS; SWISS-PROT;

DATABASE MANAGEMENT SYSTEMS; DATABASES, PROTEIN; INFORMATION STORAGE AND RETRIEVAL; INTERNET; MODELS, CHEMICAL; MODELS, MOLECULAR; PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN; STRUCTURE-ACTIVITY RELATIONSHIP;

EID: 14644435044     PISSN: 13674803     EISSN: None     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti049     Document Type: Article

References (10)

1. Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
2. Benson,D.A., Karsch-Mizrachi,I., Lipman,D.J., Ostell,J. and Wheeler,D.L. (2004) GenBank: update. Nucleic Acids Res., 32 (Database issue), D23-D26.
3. Berman,H.M., Westbrook,J., Feng,Z., Gilliland,G., Bhat,T.N., Weissig,H., Shindyalov,I.N. and Bourne,P.E. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
4. Boeckmann,B., Bairoch,A., Apweiler,R., Blatter,M.-C., Estreicher,A., Gasteiger,E., Martin,M.J., Michoud,K., O'Donovan,C., Phan,I., Pilbout,S. and Schneider,M. (2003) The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res. 31, 365-370.
5. Camon,E., Magrane,M., Barrell,D., Lee,V., Dimmer,E., Maslen,J., Binns,D., Harte,N., Lopez,R. and Apweiler,R. (2004) The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. Nucleic Acids Res., 32 (Database issue), D262-D266.
6. Chandonia,J.M., Hon,G., Walker,N.S., Lo Conte,L., Koehl,P., Levitt,M. and Brenner,S.E. (2004) The ASTRAL Compendium in 2004. Nucleic Acids Res., 32 (Database issue), D189-D192.
7. Harris,M.A., Clark,J., Ireland,A., Lomax,J., Ashburner,M., Foulger,R., Eilbeck,K., Lewis,S., Marshall,B., Mungall,C. et al. (2004) The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res., 32 (Database issue), D258-D261.
8. Kabsch,W. and Sander,C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
9. Murzin,A.G., Brenner,S.E., Hubbard,T. and Chothia,C. (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247 536-540.
10. Wu,C.H., Yeh,L.L., Huang,H., Arminski,L., Castro-Alvear,J., Chen,Y., Hu,Z., Ledley,R.S., Kourtesis,P., Suzek,B.E., Vinayaka,C.R., Zhang,J. and Barker,W.C. (2003) The Protein Information Resource. Nucleic Acids Res., 31, 345-347.