Auxin and the developing root of Arabidopsis thaliana

Physiologia Plantarum

Volumn 123, Issue 2, 2005, Pages 130-138

  Teale, William D ^a   Paponov, Ivan A ^a   Ditengou, Franck ^a   Palme, Klaus ^a  

^a UNIVERSITY OF FREIBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; GENETIC ENGINEERING; PLANTS (BOTANY);

AUXIN ACTION; CELL DIVISION; PLANT GROWTH; PLANT HORMONES;

HORMONES;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 14644415923     PISSN: 00319317     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1399-3054.2005.00475.x     Document Type: Review

References (87)

1. Abel S, MD. Nguyen, A. Theologis (1995) The PS-IAA4/5-like family of early auxin-inducible mRNAs in Arabidopsis thaliana. J Mol Biol 251: 533-549
2. Aloni R, Langhans M, Aloni E, Ullrich CI (2004) Role of cytokinin in the regulation of root gravitropism. Planta 220: 177-182
3. Bauly JM, Sealy IM, Macdonald H, Brearley J, Dröge S, Hillmer S, Robinson DG, Venis MA, Blatt MR, Lazarus CM, Napier RM (2000) Overexpression of auxin-binding protein enhances the sensitivity of guard cells to auxin. Plant Physiol 124: 1229-1238
4. Benjamins R, Ampudia CS, Hooykaas PJ, Offringa R (2003) PINOID-mediated signaling involves calcium-binding proteins. Plant Physiol 132: 1623-1630
5. Benjamins R, Quint A, Weijers D, Hooykaas P, Offringa R (2001) The PINOID protein kinase regulates organ development in Arabidopsis by enhancing polar auxin transport. Development 128: 4057-4067
6. Bennett SRM, Alvarez J, Bossinger G, Smyth DR (1995) Morphogenesis in pinoid mutants of Arabidopsis thaliana. Plant J 8: 505-520
7. Bennett MJ, Marchant A, Green HG, May ST, Ward SP, Millner PA, Walker AR, Schulz B, Feldmann KA (1996) Arabidopsis AUX1 gene: a permease-like regulator of root gravitropism. Science 273: 948-950
8. Berger F, Hung CY, Dolan L, Schiefelbein J (1998) Control of cell division in the root epidermis of Arabidopsis thaliana. Dev Biol 194: 235-245
9. Berleth T, Jürgens G (1993) The role of the monopteros gene in organising the basal body region of the Arabidopsis embryo. Development 118: 575-587
10. Blilou I, Frugier F, Folmer S, Serralbo O, Willemsen V, Wolkenfelt H, Eloy NB, Ferreira PCG, Weisbeek P, Scheres B (2002) The Arabidopsis HOBBIT gene encodes a CDC27 homolog that links the plant cell cycle to progression of cell differentiation. Genes Dev 16: 2566-2575
11. Blilou I, Wildwater M, Willemsen V, Paponov I, Friml J, Heidstra R, Palme K, Scheres B (2005) Interactions between an auxin efflux carrier network and PLETHORA genes controls patterning and cell division in Arabidopsis. Nature 433: 39-44
12. Campanoni P, Blasius B, Nick P (2003) Auxin transport synchronizes the pattern of cell division in a tobacco cell line. Plant Physiol 133: 1251-1260.
13. Casimiro I, Marchant A, Bhalerao RP, Beeckman T, Dhooge S, Swarup R, Graham N, Inze D, Sandberg G, Casero PJ, Bennett M (2001) Auxin transport promotes Arabidopsis lateral root initiation. Plant Cell 13: 843-852
14. Chapin FS (1980) The mineral nutrition of wild plants. Annu Rev Ecol Syst 11: 233-260
15. Chen R, Guan C, Boonsirichai K, Masson PH (2002) Complex physiological and molecular processes underlying root gravitropism. Plant Mol Biol 49: 305-317
16. Chen JG, Ullah H, Young JC, Sussman MR, Jones AM (2001) ABP1 is required for organized cell elongation and division in Arabidopsis embryogenesis. Genes Dev 15: 902-911
17. Dharmasiri N, Dharmasiri S, Jones AM, Estelle M (2003) Auxin action in a cell-free system. Curr Biol 13: 1418-1422
18. Dill A, Thomas SG, Hu J, Steber CM, Sun TP (2004) The Arabidopsis F-Box protein SLEEPY1 targets gibberellin signaling repressors for gibberellin-induced degradation. Plant Cell 16: 1392-1405
19. Evans T, Rosenthal ET, Youngblom J, Distel D, Hunt T (1983) Cyclin: a protein specified by maternal mRNA in sea urchin eggs that is destroyed at each cleavage division. Cell 33: 389-396
20. Firn RD, Wagstaff C, Digby J (2000) The use of mutants to probe models of gravitropism. J Exp Bot 51: 1323-1340
21. Friml J, Wisniewska J, Benková E, Mendgen K, Palme K (2002) Lateral relocation of auxin efflux regulator PIN3 mediates tropism in Arabidopsis. Nature 415: 806-809
22. Friml J, Xiong Y, Michniewicz M, Weijers D, Quint A, Tietz O, Benjamins R, Ouwerkerk P, Ljung K, Sandberg G, Hooykaas P, Palme K, Offringa R (2004) A PINOID-dependent binary switch in apical-basal PIN polar targeting directs auxin efflux. Science 306: 862-865
23. Fu X, Harberd NP (2003) Auxin promotes Arabidopsis root growth by modulating gibberellin response. Nature 421: 740-743
24. Fukuda H (2004) Signals that control plant vascular cell differentiation. Nature Rev Mol Cell Biol 5: 379-391
25. Gälweiler L, Guan C, Müller A, Wisman E, Mendgen K, Yephremov A, Palme K (1998) Regulation of polar auxin transport by AtPIN1 in Arabidopsis vascular tissue. Science 282: 2226-2230
26. Geisler M, Kolukisaoglu HU, Bouchard R, Billion K, Berger J, Saal B, Frangne N, Koncz-Kalman Z, Koncz C, Dudler R, Blakeslee JJ, Murphy AS, Martinoia E, Schulz B (2003) TWISTED DWARF1, a unique plasma membrane-anchored immunophilin-like protein, interacts with Arabidopsis multidrug resistance-like transporters AtPGP1 and AtPGP19. Mol Biol Cell 10: 4238-4249
27. Geldner N, Anders N, Wolters H, Keicher J, Kornberger W, Muller P, Delbarre A, Ueda T, Nakano A, Jürgens G (2003) The Arabidopsis GNOM ARF-GEF mediates endosomal recycling, auxin transport, and auxin-dependent plant growth. Cell 112: 219-230
28. Geldner N, Richter S, Vieten A, Marquardt S, Torres-Ruiz RA, Mayer U, Jürgens G (2004) Partial loss-of-function alleles reveal a role for GNOM in auxin transport-related, post-embryonic development of Arabidopsis. Development 131: 389-400
29. Gray WM, del Pozo JC, Walker L, Hobbie L, Risseeuw E, Banks T, Crosby WL, Yang M, Ma H, Estelle M (1999) Identification of an SCF ubiquitin-ligase complex required for auxin response in Arabidopsis thaliana. Genes Dev 13: 1678-1691
30. TIR1-dependent degradation of AUX/IAA proteins. Nature 414: 271-276
31. Hagen G, Guilfoyle T (2002) Auxin-responsive gene expression: genes, promoters and regulatory factors. Plant Mol Biol 49: 373-385
32. Hamann T, Benkova E, Baurle I, Kientz M, Jurgens G (2002) The Arabidopsis BODENLOS gene encodes an auxin response protein inhibiting MONOPTEROS-mediated embryo patterning. Genes Dev 16: 1610-1615
33. Hamann T, Mayer U, Jürgens G (1999) The auxin-insensitive bodenlos mutation affects primary root formation and apical-basal patterning in the Arabidopsis embryo. Development 126: 1387-1395
34. Hellmann H, Hobbie L, Chapman A, Dharmasiri S, Dharmasiri N, del Pozo C, Reinhardt D, Estelle M (2003) Arabidopsis AXR6 encodes CUL1 implicating SCF E3 ligases in auxin regulation of embryogenesis. EMBO J 22: 3314-3325
35. Hertel R, Thomson K, Russo VEA (1972) In vitro auxin binding to particulate cell fractions from corn coleoptiles. Planta 7: 325-340
36. Himanen K, Boucheron E, Vanneste S, de Almeida Engler J, Inze D, Beeckman T (2002) Auxin-mediated cell cycle activation during early lateral root initiation. Plant Cell 10: 2339-2351
37. Himanen K, Vuylsteke M, Vanneste S, Vercruysse S, Boucheron E, Alard P, Chriqui D, Van Montagu M, Inze D, Beeckman T (2004) Transcript profiling of early lateral root initiation. Proc Natl Acad Sci U SA 101: 5146-5151
38. Hobbie L, McGovern M, Hurwitz LR, Pierro A, Liu NY, Bandyopadhyay A, Estelle M (2000) The axr6 mutants of Arabidopsis thaliana define a gene involved in auxin response and early development. Development 127: 23-32
39. Hu Y, Xie Q, Chua NH (2003) The Arabidopsis auxin-inducible gene ARGOS controls lateral organ size. Plant Cell 9: 1951-1961
40. Jones AM, Herman EM (1993) KDEL-containing auxin-binding protein is secreted to the plasma membrane and cell wall. Plant Physiol 101: 595-606
41. Jones AM, Im KH, Savka MA, Wu MJ, DeWitt NG, Shillito R, Binns AN (1998) Auxin-dependent cell expansion mediated by overexpressed auxin-binding protein I. Science 282: 1114-1117
42. Kamphausen T, Fanghanel J, Neumann D, Schulz B, Rahfeld JU (2002) Characterization of Arabidopsis thaliana AtFKBP42 that is membrane-bound and interacts with Hsp90. Plant J 32: 263-276
43. Kepinski S, Leyser O (2002) Ubiquitination and auxin signaling: a degrading story. Plant Cell 14: S81-S95
44. TIR1 complex. Proc Natl Acad Sci USA 101: 12381-12386
45. Kim BC, Soh MS, Kang BJ, Furuya M, Nam HG (1996) Two dominant photomorphogenic mutations of Arabidopsis thaliana identified as suppressor mutations of hy2. Plant J 9: 441-456
46. Knox K, Grierson CS, Leyser O (2003) AXR3 and SHY2 interact to regulate root hair development. Development 130: 5769-5777
47. Koizumi K, Sugiyama M, Fukuda H (2000) A series of novel mutants of Arabidopsis thaliana that are defective in the formation of continuous vascular network: calling the auxin signal flow canalization hypothesis into question. Development 127: 3197-3204
48. Kosugi S, Ohashi Y (2003) Constitutive E2F expression in tobacco plants exhibits altered cell cycle control and morphological change in a cell type-specific manner. Plant Physiol 132: 2012-2022
49. Leblanc N, David K, Grosclaudei J, Pradier JM (1999) A novel immunological approach establishes that the auxin-binding protein, Nt-abp1, is an element involved in auxin signaling at the plasma membrane. J Biol Chem 274: 28314-28320
50. Leyser HM, Pickett FB, Dharmasiri S, Estelle M (1996) Mutations in the AXR3 gene of Arahidopsis result in altered auxin response including ectopic expression from the SAUR-ACI promoter. Plant J 10: 403-413
51. Lincoln C, Britton JH, Estelle M (1990) Growth and development of the axrl mutants of Arabidopsis. Plant Cell 2: 1071-1080
52. Liscum E, Reed JW (2002) Genetics of Aux/IAA and ARF action in plant growth and development. Plant Mol Biol 49: 387-400
53. Ljung K, Bhalaero RP, Sandberg G (2001) Sites and homeostatic control of auxin biosynthesis in Arabidopsis thaliana during vegetative growth. Plant J 28: 465-474
54. Lopez-Bucio J, Cruz-Ramirez A, Herrera-Estrella L (2003) The role of nutrient availability in regulating root architecture. Curr Opin Plant Biol 6: 280-287
55. Masucci JD, Schiefelbein JW (1994) The rhd6 mutation of Arabidopsis thaliana alters root-hair initiation through an auxin-associated and ethylene-associated process. Plant Physiol 106: 1335-1346
56. Menges M, Murray JA (2002) Synchronous Arahidopsis suspension cultures for analysis of cell-cycle gene activity. Plant J 30: 203-212
57. Nakamura A, Higuchi K, Goda H, Fujiwara MT, Sawa S, Koshiba T, Shimada Y, Yoshida S (2003a) Brassinolide induces IAA5, IAA19, and DR5, a synthetic auxin response element in Arabidopsis, implying a cross talk point of brassinosteroid and auxin signaling. Plant Physiol 133: 1843-1853
58. Nakamura A, Shimada Y, Goda H, Fujiwara MT, Asami T, Yoshida S (2003b) AXR1 is involved in BR-mediated elongation and SA UR-ACI gene expression in Arabidopsis. FEBS Lett 553: 28-32
59. Nemhauser JL, Mockler TC, Chory J (2004) Interdependency of brassinosteroid and auxin signaling in Arabidopsis. PLoS Biol 2: e258. 1460-1471
60. Oakenfull EA, Riou-Khamlichi C, Murray JA (2002) Plant D-type cyclins and the control of G1 progression. Philos Trans R Soc Lond B Biol Sci 357: 749-760
61. Okada K, Ueda J, Komaki MK, Bell CJ, Shimura Y (1991) Requirement of the auxin polar transport-system in early stages of Arabidopsis floral bud formation. Plant Cell 3: 677-684
62. Ottenschlager I, Wolff P, Wolverton C, Bhalerao RP, Sandberg G, Ishikawa H, Evans M, Palme K (2003) Gravity-regulated differential auxin transport from columella to lateral root cap cells. PNAS 100: 2987-91
63. Palme K, Galweiler L (1999) PIN-pointing the molecular basis of auxin transport. Curr Opin Plant Biol 5: 375-381
64. +-channel genes expressed in seedlings of Arahidopsis thaliana. Plant J 37:815-827
65. del Pozo JC, Boniotti MB, Gutierrez C (2002) Arabidopsis E2Fc functions in cell division and is degraded by the ubiquitin-SCF (AtSKP2) pathway in response to light. Plant Cell 12: 3057-3071
66. del Pozo JC, Estelle M (1999) Function of the ubiquitin-proteasome pathway in auxin response. Trends Plant Sci 4: 107-112
67. Reed JW, Elumalai RP&Chory J (1998) Suppressors of an Arabidopsis thaliana phyB mutation identify genes that control light signalling and hypocotyl elongation. Genetics 148: 1295-1310
68. Ross JJ, O'Neill D (2001) New intractions between classical plant hormones. Trends Plant Sci 6: 2-4
69. Roudier F, Fedorova E, Lebris M, Lecomte P, Gyorgyey J, Vaubert D, Horvath G, Abad P, Kondorosi A, Kondorosi E (2003) The Medicago species A2-type cyclin is auxin regulated and involved in meristem formation but dispensable for endoreduplication-associated developmental programs. Plant Physiol 131: 1091-1103
70. Ruegger M, Dewey E, Hobbie L, Brown D, Bernasconi P, Turner J, Muday G, Estelle M (1997) Reduced naphthylphthalamic acid binding in the tir3 mutant of Arabidopsis is associated with a reduction in polar auxin transport and diverse morphological defects. Plant Cell 9: 745-757
71. Sabatini S, Beis D, Wolkenfelt H, Murfett J, Guilfoyle TJ, Malamy J, Benfey P, Leyser O, Bechtold N, Weisbeek P, Scheres B (1999) An auxin-dependent distal organizer of pattern and polarity in the Arabidopsis root. Cell 99: 463-472
72. Schiefelbein J (2003) Cell-fate specification in the epidermis: a common patterning mechanism in the root and shoot. Curr Opin Plant Biol 6: 74-78
73. Schrader J, Baba K, May ST, Palme K, Bennett M, Bhalerao RP, Sandberg G (2003) Polar auxin transport in the wood-forming tissues of hybrid aspen is under simultaneous control of developmental and environmental signals. Proc Natl Acad Sci USA 100: 10096-10101
74. Skoog F, Miller CO (1957) Chemical regulation of growth and organ formation in plant tissues cultured in vitro. Symp Soc Exp Biol 11: 118-130
75. Skoog F, Tsui C (1948) Formation of adventitious shoots and roots in tobacco. Am J Bot 35: 782-787
76. Steinmann T, Geldner N, Grebe M, Mangold S, Jackson CL, Paris S, Gälweiler L, Palme K, Jürgens G (1999) Coordinated polar localization of auxin efflux carrier PIN1 by GNOM ARF GEF. Science 286: 316-318
77. Swarup R, Friml J, Marchant A, Ljung K, Sandberg G, Palme K, Bennett M (2001) Localization of the auxin permease AUX1 suggests two functionally distinct hormone transport pathways operate in the Arabidopsis root apex. Genes Dev 15: 2648-2653
78. Swarup R, Kargul J, Marchant M, Zadik D, Rahman A, Mills R, Yemm A, May S, Williams L, Millner P, Tsurumi S, Moore I, Napier R, Kerr ID, Bennett MJ (2004) Structure-function analysis of the presumptive Arabidopsis auxin permease AUX1. Plant Cell 16: 3069-3083
79. + channels in Vicia stomatal guard cells by peptide homologs to the auxin-binding protein C terminus. Proc Natl Acad Sci USA 90: 11493-11497
80. Tian Q, Reed JW (1999) Control of auxin-regulated root development by the Arabidopsis thaliana SHY2/IAA3 gene. Development 126: 711-721
81. Tian H, Klämbt D, Jones AM (1995) Auxin-binding protein 1 does not bind auxin within the endoplasmic reticulum despite this being the predominant subcellular location for this hormone receptor. J Biol Chem 270: 26962-26969
82. Timpte C (2001) Auxin binding protein: curiouser and curiouser. Trends Plant Sci 6: 586-590
83. Tuominen H, Puech L, Fink S, Sundberg B (1997) A radial concentration gradient of indole-3-acetic acid is related to secondary xylem development in hybrid aspen. Plant Physiol 115: 577-585
84. Uggla C, Moritz T, Sandberg G, Sundberg B (1996) Auxin as a positional signal in pattern formation in plants. Proc Natl Acad Sci USA 93: 9282-9286
85. Ward SP, Leyser O (2004) Shoot branching. Curr Opin Plant Biol 7: 73-78
86. Willemsen V, Wolkenfelt H, de Vrieze G, Weisbeek P, Scheres B (1998) The HOBBIT gene is required for formation of the root meristem in the Arabidopsis embryo. Development 125: 521-531
87. Woo EJ, Marshall J, Bauly J, Chen JG, Venis M, Napier RM, Pickersgill RW (2002) Crystal structure of auxin-binding protein 1 in complex with auxin. EMBO J 21: 2877-2885