Evolutionary history of African lungfish: A hypothesis from molecular phylogeny

Molecular Phylogenetics and Evolution

Volumn 35, Issue 1, 2005, Pages 281-286

  Tokita, Masayoshi ^a   Okamoto, Taku ^a   Hikida, Tsutomu ^a  

^a KYOTO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

PROTOPTERUS AETHIOPICUS;

EID: 14144256126     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ympev.2004.11.025     Document Type: Article

References (48)

1. G.F. Baldwin, and P.J. Bentley Roles of the skin and gills in sodium and water exchanges in neotenic urodele amphibians Am. J. Physiol. 242 1982 R94 R96
2. D. Barry, and J.A. Hartigan Statistical analysis of hominoid molecular evolution Stat. Sci. 2 1987 191 210
3. H. Brinkmann, B. Venkatesh, S. Brenner, and A. Meyer Nuclear protein-coding genes support lungfish and not the coelacanth as the closest living relatives of land vertebrates Proc. Natl. Acad. Sci. USA 101 2004 4900 4905
4. J.S. Budgett On the breeding habits of some African fishes, with an account of the external features in the development of Protopterus annectens and a description of the larva of Polypterus laparadei Trans. Zool. Soc. Lond. 16 1901 115 136
5. J.J. Cannone, S. Subramanian, M.N. Schnare, J.R. Collett, L.M. D'Souza, B.F.Y. Du, N. Lin, L.V. Madabusi, K.M. Muller, N. Pande, Z. Shang, N. Yu, and R.R. Gutell The comparative RNA Web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs BMC Bioinform. 3 2002 2 Correction: BMC Bioinformatics. 3, 15
6. C.S. Churcher, and G. de Iuliis A new species of Protopterus and a revision of Ceratodus humei (Dipnoi: Ceratodontiformes) from the late Cretaceous Mut Formation of eastern Dakhleh oasis, western desert of Egypt Paleontology 44 2001 305 323
7. J.N. Dent Survey of amphibian metamorphosis W. Etkin L.I. Gilbert Metamorphosis 1968 North-Holland Amsterdam 271 311
8. J. Felsenstein Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 1985 783 791
9. Felsenstein, J., 2004. PHYLIP (Phylogeny Inference Package) version 3.62. Department of Genome Sciences, University of Washington, Seattle
10. M.H. Fullarton Notes on the respiration of Lepidosiren Proc. Zool. Soc. Lond. 1931 1301 1306
11. S.J. Gould Ontogeny and Phylogeny 1977 Harvard University Press Cambridge, MA
12. P.H. Greenwood Review of Cenozoic freshwater fish faunas in Africa Ann. Geologic. Surv. Egypt IV 1974 211 232
13. P.H. Greenwood The natural history of African lungfishes J. Morphol. 1986 Suppl. 1 1987 163 179
14. S.B. Hedges, C.A. Hass, and L.R. Maxson Relations of fish and tetrapods Nature 363 1993 501 502
15. S.B. Hedges, R.A. Nussbaum, and L.R. Maxson Caecilian phylogeny and biogeography inferred from mitochondrial DNA sequences of the 12S rRNA and 16S rRNA genes (Amphibia:Gymnophiona) Herpetol. Monogr. 7 1993 64 76
16. M. Honda, H. Ota, M. Kobayashi, J. Nabhitabhata, H.-S. Yong, and T. Hikida Phylogenetic relationships of the flying lizards genus Draco (Reptilia, Agamidae) Zool. Sci. 16 1999 535 549
17. J.P. Huelsenbeck, and B. Rannala Phylogenetic methods come of age: testing hypotheses in an evolutionary context Science 276 1997 227 232
18. W. Jardine Remarks on the structure and habitats of Lepidosiren annectens Ann. Mag. Nat. Hist. 7 1841 21 26
19. K. Johansen, and C. Lenfant Respiratory function in the South American Lungfish, Lepidosiren paradoxa (Fitz.) J. Exp. Biol. 46 1967 205 218
20. A. Kemp The biology of the Australian lungfish, Neoceratodus forsteri (Krefft 1870) J. Morphol. 1986 Suppl. 1 1987 181 198
21. J.G. Kerr Normal plates of the development of Lepidosiren paradoxa and Protopterus annectens F. Keibel Normentafeln zur Entwicklungsgeschichte der Wirbelthiere 1901 Gustav Fischer Jena
22. C. Lévéque Biodiversity Dynamics and Conservation: the Freshwater Fish of Tropical Africa 1997 Cambridge University Press Cambridge, UK
23. P.J. Lockhart, M.A. Steel, M.D. Hendy, and D. Penny Recovering evolutionary trees under a more realistic model of sequence evolution Mol. Biol. Evol. 11 1994 605 612
24. J.G. Lundberg African-South American freshwater fish clades and continental drift: problems with a paradigm P. Goldblatt Biological Relationships between Africa and South America 1993 Yale University Press New Haven, CT 156 199
25. W.G. Lynn Types of amphibian metamorphosis Am. Zool. 1 1961 151 161
26. Maddison, W.P., Maddison, D.R., 2004. Mesquite: a modular system for evolutionary analysis. Version 1.03. Available from: 〈http:// mesquiteproject.org〉
27. M. Mahboudi, R. Ameur, J.Y. Crochet, and J.J. Jaeger Implications paléogéographiques de la découverte d'une nouvelle localité Eocène à vertébrés continentaux en Afrique nord-occidentale: El Kohol (sud-oranais, Algérie) Geobios 17 1984 625 629
28. C.R. Marshall A list of fossil and extant dipnoans J. Morphol. 1986 Suppl. 1 1987 15 23
29. C.R. Marshall Lungfish: phylogeny and parsimony J. Morphol. 1986 Suppl. 1 1987 151 162
30. M. Martin Deux lepidosirenidae (Dipnoi) crétacs du Sahara, Protopterus humei (Priem) et Protopterus protopteroides (Tabaste) Paläontologische Zeitung 58 1984 265 277
31. K.J. McNamara Shapes of Time: the Evolution of Growth and Development 1997 Johns Hopkins University Press Baltimore, MD
32. R.S. Miles Dipnoan (lungfish) skulls and the relationships of the group: a study based on new species from the Devonian of Australia Zool. J. Linn. Soc. 61 1977 1 328
33. D.P. Mindell, and R.L. Honeycutt Ribosomal RNA in vertebrates: evolution and phylogenetic application Annu. Rev. Ecol. Syst. 21 1990 541 566
34. C. Patterson The distribution of Mesozoic freshwater fishes Mémoires du Muséum d'Histoire naturelle de Paris 88 1975 156 173
35. M. Poll Révision systmatique et raciation gographique de Protopteridae de l'Afrique centrale Annls. Mus. R. Afr. Cent. 103 1961 1 50 +6pl
36. T. Schlüter Geology of East Africa 1997 Gebrüder Borntraegar Berlin
37. R. Semon Normentafel zur Entwicklungsgeschichte des Ceratodus forsteri F. Keibel Normentafeln zur Entwicklungsgeschichte der Wirbelthiere 1901 Gustav Fischer Jena
38. N. Takezaki, A. Rzhetsky, and M. Nei Phylogenetic test of the molecular clock and linearized tree Mol. Biol. Evol. 12 1995 823 833
39. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 24 1997 4876 4882
40. E. Trewavas The presence in Africa east of the Rift Valleys of two species of Protopterus, P. annectens and P. amphibius. Ann. Mus. Congo Belge sér Quarto Zool. 1 1954 83 100
41. M.J.P. Van Oijen Appendix I. Key to Lake Victoria fishes other than haplochromine cichlid F. Witte W.L.T. van Densen Fish Stocks and Fisheries of Lake Victoria: A Handbook for Field Observations 1995 Samara Publishing Limited Dyfed, Great Britain 209 300
42. H. Wada, K.W. Makabe, M. Nakauchi, and N. Satoh Phylogenetic relationships between solitary and colonial ascidians, as inferred from the sequence of the central region of their respective 18S rDNA Biol. Bull. 183 1992 448 455
43. M.H. Wake Urogenital morphology of dipnoans, with comparisons to other fishes and to amphibians J. Morphol. 1986 Suppl. 1 1987 199 216
44. A.S. Whiting, A.M. Bauer, and J.W. Sites Jr. Phylogenetic relationships and limb loss in sub-Saharan African scincine lizards (Squamata: Scincidae) Mol. Phylogenet. Evol. 29 2003 582 598
45. D.E. Wright Morphology of the gill epithelium of the lungfish, Lepidosiren paradoxa Cell Tissue. Res. 153 1974 365 381
46. Z. Yang PAML: a program package for phylogenetic analysis by maximum likelihood CABIOS 13 1997 555 556
47. Y. Yaoita, and D.D. Brown A correlation of thyroid hormone receptor gene expression with amphibian metamorphosis Genes Dev. 4 1990 1917 1924
48. R. Zardoya, and A. Meyer The complete nucleotide sequence of the mitochondrial genome of the lungfish (Protopterus dolloi) supports its phylogenetic position as a close relative of land vertebrates Genetics 142 1996 1249 1263