-
2
-
-
0034948896
-
A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
-
P. Baldi and A. D. Long. A Bayesian Framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics, 17(6):509-19, 2001.
-
(2001)
Bioinformatics
, vol.17
, Issue.6
, pp. 509-519
-
-
Baldi, P.1
Long, A.D.2
-
3
-
-
0004250527
-
Scoring genes for relevance
-
School of Computer Science and Engineering, Hebrew University
-
A. Ben-Dor, N. Friedman, and Z. Yakhini. Scoring genes for relevance. Technical Report 2000-38, School of Computer Science and Engineering, Hebrew University, 2000.
-
(2000)
Technical Report
, vol.2000
, Issue.38
-
-
Ben-Dor, A.1
Friedman, N.2
Yakhini, Z.3
-
4
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Y. Benjamini and Y. Hochberg. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Roy. Stat. Soc. B, 57:289-300, 1995.
-
(1995)
J. Roy. Stat. Soc. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
5
-
-
0038238080
-
Statistical methods for ranking differentially expressed genes
-
P. Broberg. Statistical methods for ranking differentially expressed genes. Genome Biology, 4(6), 2003.
-
(2003)
Genome Biology
, vol.4
, Issue.6
-
-
Broberg, P.1
-
6
-
-
0032112293
-
A genome-wide transcriptional analysis of the mitotic cell cycle
-
R. J. Cho, M. J. Campbell, E. A. Winzeler, L. Steinmetz, A. Conway, L. Wodicka, T. G. Wolfsberg, A. E. Gabrielian, D. Landsman, D. J. Lockhart, and R. W. Davis. A genome-wide transcriptional analysis of the mitotic cell cycle. Mol Cell, 2:65-73, 1998.
-
(1998)
Mol Cell
, vol.2
, pp. 65-73
-
-
Cho, R.J.1
Campbell, M.J.2
Winzeler, E.A.3
Steinmetz, L.4
Conway, A.5
Wodicka, L.6
Wolfsberg, T.G.7
Gabrielian, A.E.8
Landsman, D.9
Lockhart, D.J.10
Davis, R.W.11
-
7
-
-
0037276175
-
Statistical tests for differential expression in cDNA microarray experiments
-
X. Cui and G. A. Churchill. Statistical tests for differential expression in cDNA microarray experiments. Genome Biology, 4(210), 2003.
-
(2003)
Genome Biology
, vol.4
, Issue.210
-
-
Cui, X.1
Churchill, G.A.2
-
9
-
-
0043203327
-
Multiple hypothesis testing in microarray experiments
-
S. Dudoit, J. P. Shaffer, and J. C. Boldrick. Multiple hypothesis testing in microarray experiments. Statistical Science, 18(1):71-103, 2003.
-
(2003)
Statistical Science
, vol.18
, Issue.1
, pp. 71-103
-
-
Dudoit, S.1
Shaffer, J.P.2
Boldrick, J.C.3
-
10
-
-
0041530047
-
Resampling-based multiple testing for microarray data analysis
-
Department of Statistics, University of California, Berkeley
-
Y. Ge, S. Dudoit, and T. P. Speed. Resampling-based multiple testing for microarray data analysis. Technical Report 633, Department of Statistics, University of California, Berkeley, 2003.
-
(2003)
Technical Report
, vol.633
-
-
Ge, Y.1
Dudoit, S.2
Speed, T.P.3
-
11
-
-
0033569406
-
Molecular classification of cancer class discovery and class prediction by gene expression monitoring
-
T. R. Golub, D. K. Slonim, P. Tamayo, C. Huard, M. Gaasenbeek, J. P. Mesirov, H. Coller, M. L. Loh, J. R. Downing, M. A. Caligiuri, C. D. Bloomfield, and E. S. Lander. Molecular classification of cancer class discovery and class prediction by gene expression monitoring. Science, 286(5439):531-37, 1999.
-
(1999)
Science
, vol.286
, Issue.5439
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
Bloomfield, C.D.11
Lander, E.S.12
-
12
-
-
0035931947
-
Gene-expression profiles in hereditary breast cancer
-
I. Hedenfalk, D. Duggan, Y. Chen, M. Radmacher, M. Bittner, R. Simon, P. Meltzer, B. Gusterson, M. Esteller, O. P. Kallioniemi, B. Wilfond, A. Borg, and J. Trent. Gene-Expression Profiles in Hereditary Breast Cancer. N. Engl. J. Med., 344(8):539-48, 2001.
-
(2001)
N. Engl. J. Med.
, vol.344
, Issue.8
, pp. 539-548
-
-
Hedenfalk, I.1
Duggan, D.2
Chen, Y.3
Radmacher, M.4
Bittner, M.5
Simon, R.6
Meltzer, P.7
Gusterson, B.8
Esteller, M.9
Kallioniemi, O.P.10
Wilfond, B.11
Borg, A.12
Trent, J.13
-
13
-
-
0032567081
-
Dissecting the regulatory circuitry of a eukaryotic genome
-
F. Holstege, E. Jennings, J. Wyrick, T. Lee, C. Hengartner, M. Green, T. Golub, E. Lander, and R. Young. Dissecting the regulatory circuitry of a eukaryotic genome. Cell, 95(5):717-28, 1998.
-
(1998)
Cell
, vol.95
, Issue.5
, pp. 717-728
-
-
Holstege, F.1
Jennings, E.2
Wyrick, J.3
Lee, T.4
Hengartner, C.5
Green, M.6
Golub, T.7
Lander, E.8
Young, R.9
-
14
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonucleotide arrays
-
D. J. Lockhart, H. Dong, M. C. Byrne, M. T. Follettie, M. V. Gallo, M. S. Chee, M. Mittmann, C. Wang, M. Kobayashi, H. Horton, and E. L. Brown. Expression monitoring by hybridization to high-density oligonucleotide arrays. Nature Biotechnology, 14:1675-80, 1996.
-
(1996)
Nature Biotechnology
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.J.1
Dong, H.2
Byrne, M.C.3
Follettie, M.T.4
Gallo, M.V.5
Chee, M.S.6
Mittmann, M.7
Wang, C.8
Kobayashi, M.9
Horton, H.10
Brown, E.L.11
-
15
-
-
0036012343
-
Replicated microarray data
-
I. Lonnstedt and T. P. Speed. Replicated microarray data. Stat Sinica, 12:31-46, 2002.
-
(2002)
Stat Sinica
, vol.12
, pp. 31-46
-
-
Lonnstedt, I.1
Speed, T.P.2
-
16
-
-
14044260814
-
Sampling distribution of the SAM-statistic
-
Department of Engineering Science, University of Oxford
-
S. Mukherjee. Sampling Distribution of the SAM-statistic. Technical Report PARG-04-01, Department of Engineering Science, University of Oxford, 2004. Available at http://www.robots.ox.ac.uk/~parg/publications.html.
-
(2004)
Technical Report
, vol.PARG-04-01
-
-
Mukherjee, S.1
-
17
-
-
0035999977
-
A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
-
W. Pan. A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments. Bioinformatics, 18(4):546-554, 2002.
-
(2002)
Bioinformatics
, vol.18
, Issue.4
, pp. 546-554
-
-
Pan, W.1
-
18
-
-
0037433040
-
Identifying differentially expressed genes using false discovery rate controlling procedures
-
A. Reiner, D. Yekutieli, and Y. Benjamini. Identifying Differentially Expressed Genes Using False Discovery Rate Controlling Procedures. Bioinfomatics, 19:368-75, 2003.
-
(2003)
Bioinfomatics
, vol.19
, pp. 368-375
-
-
Reiner, A.1
Yekutieli, D.2
Benjamini, Y.3
-
19
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
M. Schena, D. Shalon, R. W. Davis, and P. O. Brown. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 270(5235):467-70, 1995.
-
(1995)
Science
, vol.270
, Issue.5235
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
20
-
-
0346605836
-
Statistical challenges in functional genomics
-
P. Sebastiani, E. Gussoni, I. S. Kohane, and M. Ramoni. Statistical Challenges in Functional Genomics. Statistical Science, 18(1):33-70, 2003.
-
(2003)
Statistical Science
, vol.18
, Issue.1
, pp. 33-70
-
-
Sebastiani, P.1
Gussoni, E.2
Kohane, I.S.3
Ramoni, M.4
-
21
-
-
0042424602
-
Statistical significance for genomewide studies
-
J. D. Storey and R. Tibshirani. Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. USA, 100(16):9440-45, 2003.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, Issue.16
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
22
-
-
0036856209
-
Nonparametric methods for identifying differentially expressed genes in microarray data
-
O. G. Troyanskaya, M. E. Garber, P. O. Brown, D. Botstein, and R. B. Altman. Nonparametric methods for identifying differentially expressed genes in microarray data. Bioinformatics, 18(11): 1454-61, 2002.
-
(2002)
Bioinformatics
, vol.18
, Issue.11
, pp. 1454-1461
-
-
Troyanskaya, O.G.1
Garber, M.E.2
Brown, P.O.3
Botstein, D.4
Altman, R.B.5
-
23
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
V. Tosher, R. Tibshirani, and G. Chu. Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. USA, 98(9):5116-21, 2001.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, Issue.9
, pp. 5116-5121
-
-
Tosher, V.1
Tibshirani, R.2
Chu, G.3
|