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Volumn 4, Issue 6, 2003, Pages

Statistical methods for ranking differentially expressed genes

Author keywords

Additional Data File; Group Label; Permutation Method; Receiver Operating Characteristic; Receiver Operating Characteristic Curve

Indexed keywords

COMPLEMENTARY DNA;

EID: 0038238080     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2003-4-6-r41     Document Type: Article
Times cited : (83)

References (32)
  • 1
    • 0036012343 scopus 로고    scopus 로고
    • Replicated microarray data
    • Lonnstedt I, Speed TP: Replicated microarray data. Stat Sinica. 2002, 12: 31-46.
    • (2002) Stat Sinica , vol.12 , pp. 31-46
    • Lonnstedt, I.1    Speed, T.P.2
  • 2
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • PID: 11309499, COI: 1:CAS:528:DC%2BD3MXjt1Ons7w%3D
    • Tusher VG, Tibshirani R, Chu G: Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA. 2001, 98: 5116-5121. 10.1073/pnas.091062498. DOI: 10.1073/pnas.091062498
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 4
    • 0034948896 scopus 로고    scopus 로고
    • A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes
    • PID: 11395427, COI: 1:CAS:528:DC%2BD3MXltFOgsLk%3D
    • Baldi P, Long AD: A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics. 2001, 17: 509-519. 10.1093/bioinformatics/17.6.509. DOI: 10.1093/bioinformatics/17.6.509
    • (2001) Bioinformatics , vol.17 , pp. 509-519
    • Baldi, P.1    Long, A.D.2
  • 6
    • 0030305457 scopus 로고    scopus 로고
    • R: a language for data analysis and graphics
    • Ihaka R, Gentleman R: R: a language for data analysis and graphics. J Comput Graph Stat. 1996, 5: 299-314.
    • (1996) J Comput Graph Stat , vol.5 , pp. 299-314
    • Ihaka, R.1    Gentleman, R.2
  • 10
    • 0036376993 scopus 로고    scopus 로고
    • Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
    • Dudoit S, Yang YH, Speed TP, Callow MJ: Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Stat Sinica. 2002, 12: 111-140.
    • (2002) Stat Sinica , vol.12 , pp. 111-140
    • Dudoit, S.1    Yang, Y.H.2    Speed, T.P.3    Callow, M.J.4
  • 13
    • 1542784653 scopus 로고    scopus 로고
    • Empirical Bayes analysis of a microarray experiment
    • Efron B, Tibshirani R, Storey JD, Tusher VG: Empirical Bayes analysis of a microarray experiment. J Am Stat Assoc. 2001, 96: 1151-1160. 10.1198/016214501753382129. DOI: 10.1198/016214501753382129
    • (2001) J Am Stat Assoc , vol.96 , pp. 1151-1160
    • Efron, B.1    Tibshirani, R.2    Storey, J.D.3    Tusher, V.G.4
  • 14
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y: Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc B. 1995, 57: 963-971.
    • (1995) J R Stat Soc B , vol.57 , pp. 963-971
    • Benjamini, Y.1    Hochberg, Y.2
  • 16
    • 0033569406 scopus 로고    scopus 로고
    • Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
    • PID: 10521349, COI: 1:CAS:528:DyaK1MXmvVOhu7g%3D
    • Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, Coller H, Loh ML, Downing JR, Caligiuri MA, et al: Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science. 1999, 286: 531-537. 10.1126/science.286.5439.531. DOI: 10.1126/science.286.5439.531
    • (1999) Science , vol.286 , pp. 531-537
    • Golub, T.R.1    Slonim, D.K.2    Tamayo, P.3    Huard, C.4    Gaasenbeek, M.5    Mesirov, J.P.6    Coller, H.7    Loh, M.L.8    Downing, J.R.9    Caligiuri, M.A.10
  • 17
    • 85182623548 scopus 로고    scopus 로고
    • Whitehead Institute Center for Genome Research: Cancer Genomics Publications Data Sets. [http://www-genome.wi.mit.edu/cgi-bin/cancer/datasets.cgi]
    • Cancer Genomics Publications Data Sets
  • 19
    • 84886765612 scopus 로고    scopus 로고
    • Affymetrix. [http://www.affymetrix.com]
    • Affymetrix
  • 22
    • 0034526621 scopus 로고    scopus 로고
    • Microarray expression profiling identifies genes with altered expression in hdl-deficient mice
    • PID: 11116096, COI: 1:CAS:528:DC%2BD3MXjs10%3D
    • Callow MJ, Dudoit S, Gong EL, Speed TP, Rubin EM: Microarray expression profiling identifies genes with altered expression in hdl-deficient mice. Genome Res. 2000, 10: 2022-2029. 10.1101/gr.10.12.2022. DOI: 10.1101/gr.10.12.2022
    • (2000) Genome Res , vol.10 , pp. 2022-2029
    • Callow, M.J.1    Dudoit, S.2    Gong, E.L.3    Speed, T.P.4    Rubin, E.M.5
  • 23
    • 0034703060 scopus 로고    scopus 로고
    • Global gene expression profiling in Escherichia coliK12: the effect of integration host factor
    • PID: 10871608, COI: 1:CAS:528:DC%2BD3cXmvFKjtrY%3D
    • Arfin SM, Long AD, Ito T, Tolleri L, Riehle MM, Paegle ES, Hatfield GW: Global gene expression profiling in Escherichia coli K12: the effect of integration host factor. J Biol Chem. 2000, 275: 29672-29684. 10.1074/jbc.M002247200. DOI: 10.1074/jbc.M002247200
    • (2000) J Biol Chem , vol.275 , pp. 29672-29684
    • Arfin, S.M.1    Long, A.D.2    Ito, T.3    Tolleri, L.4    Riehle, M.M.5    Paegle, E.S.6    Hatfield, G.W.7
  • 25
    • 0035999977 scopus 로고    scopus 로고
    • A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
    • PID: 12016052, COI: 1:CAS:528:DC%2BD38XjvFeitr0%3D
    • Pan W: A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments. Bioinformatics. 2002, 18: 546-554. 10.1093/bioinformatics/18.4.546. DOI: 10.1093/bioinformatics/18.4.546
    • (2002) Bioinformatics , vol.18 , pp. 546-554
    • Pan, W.1
  • 28
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection
    • PID: 11134512, COI: 1:CAS:528:DC%2BD3MXkslKnuw%3D%3D
    • Li C, Wong WH: Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci. 2001, 98: 31-36. 10.1073/pnas.011404098. DOI: 10.1073/pnas.98.1.31
    • (2001) Proc Natl Acad Sci , vol.98 , pp. 31-36
    • Li, C.1    Wong, W.H.2
  • 29
    • 0034923013 scopus 로고    scopus 로고
    • On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data
    • PID: 11339905, COI: 1:CAS:528:DC%2BD3MXmsFKms7s%3D
    • Newton MA, Kendziorski CM, Richmond CS, Blattner FR, Tsui KW: On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data. J Comput Biol. 2001, 8: 37-52. 10.1089/106652701300099074. DOI: 10.1089/106652701300099074
    • (2001) J Comput Biol , vol.8 , pp. 37-52
    • Newton, M.A.1    Kendziorski, C.M.2    Richmond, C.S.3    Blattner, F.R.4    Tsui, K.W.5
  • 30
    • 0036191188 scopus 로고    scopus 로고
    • Adjustments and measures of differential expression for microarray data
    • PID: 11847073, COI: 1:CAS:528:DC%2BD38XitFensLg%3D
    • Tsodikov A, Szabo A, Jones D: Adjustments and measures of differential expression for microarray data. Bioinformatics. 2002, 18: 251-260. 10.1093/bioinformatics/18.2.251. DOI: 10.1093/bioinformatics/18.2.251
    • (2002) Bioinformatics , vol.18 , pp. 251-260
    • Tsodikov, A.1    Szabo, A.2    Jones, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.