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Volumn 3, Issue 2 SUPPL.1, 2004, Pages 16-22

COFRADIC™: The Hubble telescope of proteomics

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; CYSTEINE; METHIONINE; PEPTIDE; PHOSPHOPEPTIDE;

EID: 13844274697     PISSN: 17418372     EISSN: None     Source Type: Journal    
DOI: 10.1016/s1741-8372(04)02416-8     Document Type: Review
Times cited : (14)

References (39)
  • 1
    • 0016711037 scopus 로고
    • High resolution two-dimensional electrophoresis of proteins
    • O'Farrell, P.H. (1975) High resolution two-dimensional electrophoresis of proteins. J. Biol. Chem. 250, 4007-4021
    • (1975) J. Biol. Chem. , vol.250 , pp. 4007-4021
    • O'Farrell, P.H.1
  • 2
    • 0016637146 scopus 로고
    • Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals
    • Klose, J. (1975) Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals. Humangenetik 26, 231-243
    • (1975) Humangenetik , vol.26 , pp. 231-243
    • Klose, J.1
  • 3
    • 0028429419 scopus 로고
    • Protein identification by peptide mass fingerprinting
    • Cottrell, J.S. (1994) Protein identification by peptide mass fingerprinting. Peptide Res. 7, 115-124
    • (1994) Peptide Res. , vol.7 , pp. 115-124
    • Cottrell, J.S.1
  • 4
    • 0033051101 scopus 로고    scopus 로고
    • Direct analysis of protein complexes using mass spectrometry
    • Link, A.J. et al. (1999) Direct analysis of protein complexes using mass spectrometry. Nat. Biotechnol. 17, 676-682
    • (1999) Nat. Biotechnol. , vol.17 , pp. 676-682
    • Link, A.J.1
  • 5
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn, M.P. et al. (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 19, 242-247
    • (2001) Nat. Biotechnol. , vol.19 , pp. 242-247
    • Washburn, M.P.1
  • 6
    • 0037143692 scopus 로고    scopus 로고
    • Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags
    • Lipton, M.S. et al. (2002) Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags. Proc. Natl. Acad. Sci. U. S. A. 99, 11049-11054
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 11049-11054
    • Lipton, M.S.1
  • 7
    • 0038561131 scopus 로고    scopus 로고
    • A method for the comprehensive proteomic analysis of membrane proteins
    • Wu, C.C. et al. (2003) A method for the comprehensive proteomic analysis of membrane proteins. Nat. Biotechnol. 21, 532-538
    • (2003) Nat. Biotechnol. , vol.21 , pp. 532-538
    • Wu, C.C.1
  • 8
    • 0032875697 scopus 로고    scopus 로고
    • Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
    • Gygi, S.P. et al. (1999) Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 17, 994-999
    • (1999) Nat. Biotechnol. , vol.17 , pp. 994-999
    • Gygi, S.P.1
  • 9
    • 0033956669 scopus 로고    scopus 로고
    • Signature-peptide approach to detecting proteins in complex mixtures
    • Geng, M. et al. (2000) Signature-peptide approach to detecting proteins in complex mixtures. J. Chromatogr. A. 870, 295-313
    • (2000) J. Chromatogr. A. , vol.870 , pp. 295-313
    • Geng, M.1
  • 10
    • 0034604802 scopus 로고    scopus 로고
    • Strategy for qualitative and quantitative analysis in proteomics based on signature peptides
    • Ji, J. et al. (2000) Strategy for qualitative and quantitative analysis in proteomics based on signature peptides. J. Chromatogr. B 745, 197-210
    • (2000) J. Chromatogr. B , vol.745 , pp. 197-210
    • Ji, J.1
  • 11
    • 0034121916 scopus 로고    scopus 로고
    • Simplification of complex peptide mixtures for proteomic analysis: Reversible biotinylation of cysteinyl peptides
    • Spahr, C.S. et al. (2000) Simplification of complex peptide mixtures for proteomic analysis: reversible biotinylation of cysteinyl peptides. Electrophoresis 21, 1635-1650
    • (2000) Electrophoresis , vol.21 , pp. 1635-1650
    • Spahr, C.S.1
  • 12
    • 0035067251 scopus 로고    scopus 로고
    • Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome
    • Oda, Y. et al. (2001) Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome. Nat. Biotechnol. 19, 379-382
    • (2001) Nat. Biotechnol. , vol.19 , pp. 379-382
    • Oda, Y.1
  • 13
    • 0035958567 scopus 로고    scopus 로고
    • Proteomics based on selecting and quantifying cysteine containing peptides by covalent chromatography
    • Wang, S. and Regnier, F.E. (2001) Proteomics based on selecting and quantifying cysteine containing peptides by covalent chromatography. J. Chromatogr. A. 924, 345-357
    • (2001) J. Chromatogr. A. , vol.924 , pp. 345-357
    • Wang, S.1    Regnier, F.E.2
  • 14
    • 0035072715 scopus 로고    scopus 로고
    • A systematic approach to the analysis of protein phosphorylation
    • Zhou, H. et al. (2001) A systematic approach to the analysis of protein phosphorylation. Nat. Biotechnol. 19, 375-378
    • (2001) Nat. Biotechnol. , vol.19 , pp. 375-378
    • Zhou, H.1
  • 15
    • 0036198435 scopus 로고    scopus 로고
    • Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae
    • Ficarro, S.B. et al. (2002) Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat. Biotechnol. 20, 301-305
    • (2002) Nat. Biotechnol. , vol.20 , pp. 301-305
    • Ficarro, S.B.1
  • 16
    • 0038699625 scopus 로고    scopus 로고
    • Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry
    • Zhang, H. et al. (2003) Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. Nat. Biotechnol. 21, 660-666
    • (2003) Nat. Biotechnol. , vol.21 , pp. 660-666
    • Zhang, H.1
  • 17
    • 0038271634 scopus 로고    scopus 로고
    • Chromatographic isolation of methionine-containing peptides for gel-free proteome analysis: Identification of more than 800 Escherichia proteins
    • Gevaert, K. et al. (2002) Chromatographic isolation of methionine-containing peptides for gel-free proteome analysis: identification of more than 800 Escherichia proteins. Mol. Cell. Proteomics 1, 896-903
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 896-903
    • Gevaert, K.1
  • 18
    • 0038333588 scopus 로고    scopus 로고
    • Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides
    • Gevaert, K. et al. (2003) Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. Nat. Biotechnol. 21, 566-569
    • (2003) Nat. Biotechnol. , vol.21 , pp. 566-569
    • Gevaert, K.1
  • 19
    • 1842423659 scopus 로고    scopus 로고
    • Reversible labeling of cysteine-containing peptides allows their chromatographic isolation for non-gel proteome studies
    • in press
    • Gevaert, K. et al. Reversible labeling of cysteine-containing peptides allows their chromatographic isolation for non-gel proteome studies. Proteomics (in press)
    • Proteomics
    • Gevaert, K.1
  • 20
    • 0016321645 scopus 로고
    • Diagonal chromatography for the selective purification of tyrosyl peptides
    • Cruickshank, W.H. et al. (1974) Diagonal chromatography for the selective purification of tyrosyl peptides. Can. J. Biochem. 52, 1013-1017
    • (1974) Can. J. Biochem. , vol.52 , pp. 1013-1017
    • Cruickshank, W.H.1
  • 21
    • 0013958696 scopus 로고
    • Location of disulphide bridges by diagonal paper electrophoresis. The disulphide bridges of bovine chymotrypsinogen A
    • Brown, J.R. and Hartley, B.S. (1966) Location of disulphide bridges by diagonal paper electrophoresis. The disulphide bridges of bovine chymotrypsinogen A. Biochem. J. 101, 214-228
    • (1966) Biochem. J. , vol.101 , pp. 214-228
    • Brown, J.R.1    Hartley, B.S.2
  • 22
  • 23
    • 0016537404 scopus 로고
    • A new method for disulfide analysis of peptides
    • Anderson, W.L. and Wetlaufer, D.B. (1975) A new method for disulfide analysis of peptides. Anal. Biochem. 67, 493-502
    • (1975) Anal. Biochem. , vol.67 , pp. 493-502
    • Anderson, W.L.1    Wetlaufer, D.B.2
  • 24
    • 0018416496 scopus 로고
    • Ellman's reagent: 5,5 -dithiobis(2-nitrobenzoic acid) - A reexamination
    • Riddles, P.W. et al. (1979) Ellman's reagent: 5,5 -dithiobis(2- nitrobenzoic acid) - a reexamination. Anal. Biochem. 94, 75-81
    • (1979) Anal. Biochem. , vol.94 , pp. 75-81
    • Riddles, P.W.1
  • 25
    • 0028360823 scopus 로고
    • A procedure for quantitative determination of tris(2-carboxyethyl) phosphine, an odorless reducing agent more stable and effective than dithiothreitol
    • Han, J.C. and Han, G.Y. (1994) A procedure for quantitative determination of tris(2-carboxyethyl)phosphine, an odorless reducing agent more stable and effective than dithiothreitol. Anal. Biochem. 220, 5-10
    • (1994) Anal. Biochem. , vol.220 , pp. 5-10
    • Han, J.C.1    Han, G.Y.2
  • 26
    • 0001616942 scopus 로고
    • On the preparation and properties of 2,4,6-trinitrophenyl-amino acids and -peptides
    • Okuyama, T. and Satake, K. (1960) On the preparation and properties of 2,4,6-trinitrophenyl-amino acids and -peptides. J. Biochem. (Tokyo) 47, 454-466
    • (1960) J. Biochem. (Tokyo) , vol.47 , pp. 454-466
    • Okuyama, T.1    Satake, K.2
  • 27
    • 77957004481 scopus 로고
    • The rapid determination of amino groups with TNBS
    • Fields, R. (1972) The rapid determination of amino groups with TNBS. Methods Enzymol. 25, 464-468
    • (1972) Methods Enzymol. , vol.25 , pp. 464-468
    • Fields, R.1
  • 28
    • 0019877197 scopus 로고
    • Selective dephosphorylation of proteins containing phosphotyrosine by alkaline phosphatases
    • Swarup, G. et al. (1981) Selective dephosphorylation of proteins containing phosphotyrosine by alkaline phosphatases. J. Biol. Chem. 256, 8197-8201
    • (1981) J. Biol. Chem. , vol.256 , pp. 8197-8201
    • Swarup, G.1
  • 29
    • 0036391454 scopus 로고    scopus 로고
    • Proteome analysis of low-abundance proteins using multidimensional chromatography and isotope-coded affinity tags
    • Gygi, S.P. et al. (2002) Proteome analysis of low-abundance proteins using multidimensional chromatography and isotope-coded affinity tags. J. Proteome Res. 1, 47-54
    • (2002) J. Proteome Res. , vol.1 , pp. 47-54
    • Gygi, S.P.1
  • 30
    • 0037578010 scopus 로고    scopus 로고
    • 18O exchange of truncated peptide substrates
    • 18O exchange of truncated peptide substrates. J. Proteome Res. 2, 147-152
    • (2003) J. Proteome Res. , vol.2 , pp. 147-152
    • Yao, X.1
  • 32
    • 0030068923 scopus 로고    scopus 로고
    • 18O into peptide fragments and its application for protein sequencing by electrospray and matrix-assisted laser desorption/ionization mass spectrometry
    • 18O into peptide fragments and its application for protein sequencing by electrospray and matrix-assisted laser desorption/ ionization mass spectrometry. Electrophoresis 17, 945-953
    • (1996) Electrophoresis , vol.17 , pp. 945-953
    • Schnolzer, M.1
  • 33
    • 0030787110 scopus 로고    scopus 로고
    • Novel techniques for identification and characterization of proteins loaded on gels in femtomole amounts
    • Gevaert, K. et al. (1997) Novel techniques for identification and characterization of proteins loaded on gels in femtomole amounts. J Protein Chem. 16, 335-342
    • (1997) J Protein Chem , vol.16 , pp. 335-342
    • Gevaert, K.1
  • 34
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins, D.N. et al. (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20, 3551-3567
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1
  • 35
    • 0037396730 scopus 로고    scopus 로고
    • The Gene Ontology Annotation (GOA) project: Implementation of GO in SWISS-PROT, TrEMBL and InterPro
    • Camon, E. et al. (2003) The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL and InterPro. Genome Res. 13, 662-672
    • (2003) Genome Res. , vol.13 , pp. 662-672
    • Camon, E.1
  • 36
    • 0034095972 scopus 로고    scopus 로고
    • The current state of two-dimensional electrophoresis with immobilized pH gradients
    • Gorg, A. et al.. (2000) The current state of two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis 21, 1037-1053
    • (2000) Electrophoresis , vol.21 , pp. 1037-1053
    • Gorg, A.1    Al, E.2
  • 37
    • 0343376097 scopus 로고    scopus 로고
    • Difference gel electrophoresis: A single gel method for detecting changes in protein extracts
    • Unlu, M. et al. (1997) Difference gel electrophoresis: a single gel method for detecting changes in protein extracts. Electrophoresis 18, 2071-2077
    • (1997) Electrophoresis , vol.18 , pp. 2071-2077
    • Unlu, M.1
  • 38
    • 0347361594 scopus 로고    scopus 로고
    • Ultrasensitive proteomics using high-efficiency online micro-SPE-NanoLC-NanoESI MS and MS/MS
    • Shen, Y. et al. (2004) ultrasensitive proteomics using high-efficiency online micro-SPE-NanoLC-NanoESI MS and MS/ MS. Anal. Chem. 76, 144-154
    • (2004) Anal. Chem. , vol.76 , pp. 144-154
    • Shen, Y.1
  • 39
    • 15744400387 scopus 로고    scopus 로고
    • Methods and apparatus for gel-free qualitative and quantitative proteome analysis, and uses thereof. International Patent No. WO 02/077016
    • Vandekerekove, J. and Gevaert, K. (2003) Methods and apparatus for gel-free qualitative and quantitative proteome analysis, and uses thereof. International Patent No. WO 02/077016
    • (2003)
    • Vandekerekove, J.1    Gevaert, K.2


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