The linderniaceae and gratiolaceae are further lineages distinct from the scrophulariaceae (Lamiales)

Plant Biology

Volumn 7, Issue 1, 2005, Pages 67-78

  Rahmanzadeh, R ^a   Muller K ^a   Fischer, E ^b   Bartels, D ^a   Borsch, T ^a  

^a UNIVERSITY OF BONN   (Germany)

^b Universität Koblenz Landau ^*  (Germany)

Author keywords

Gratiolaceae; Lamiales; Linderniaceae; Phylogeny; Poikilohydric plants; Scrophulariaceae

Indexed keywords

ANGIOSPERM; PHYLOGENY; TAXONOMY;

ARTICLE; BAYES THEOREM; CLASSIFICATION; GENE; GENETICS; HISTOLOGY; INTRON; PHENOTYPE; PHYLOGENY; SCROPHULARIACEAE; SPECIES DIFFERENCE;

BAYES THEOREM; GENES, PLANT; INTRONS; PHENOTYPE; PHYLOGENY; SCROPHULARIACEAE; SPECIES SPECIFICITY;

CALCEOLARIACEAE; CRATEROSTIGMA; GRATIOLA; LAMIALES; LINDERNIA; MAGNOLIOPHYTA; PHRYMACEAE; PLANTAGINACEAE; SCROPHULARIACEAE;

EID: 13844271493     PISSN: 14358603     EISSN: None     Source Type: Journal    
DOI: 10.1055/s-2004-830444     Document Type: Article

References (55)

1. Akaike, H. (1974) A new look at the statistic model identification. IEEE Transactions on Automatic Control 19, 716-723.
2. Albach, D. C. and Chase, M. (2001) Paraphyly of Veronica (Veroniceae, Scrophulariaceae): Evidence from Internal Transcribed Spacer (ITS) Sequences of Nuclear Ribosomal DNA. Journal of Plant Research 114, 9-18.
3. APG2 (2003) An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II. Botanical Journal of the Linnean Society 141, 399-436.
4. Beardsley, P. M. and Olmstead, R. G. (2002) Redefining Phrymaceae: The placement of Mimulus, tribe Mimuleae, and Phryma. American Journal of Botany 89, 1093-1102.
5. Bentham, G. (1846) Scrophulariaceae. In Prodromus Systematis Naturalis 10 (De Candolle, A. P., ed.), Paris: Lovell, Reeve & Co., 186-586.
6. Bentham, G. (1876) Scrophulariaceae. In Genera Plantarum 2 (Bentham, G. and Hooker, J. D., eds.), London: Lovell, Reeve & Co., 913-980.
7. Borsch, T., Hilu, W., Quandt, D., Wilde, V., Neinhuis, C., and Barthlott, W. (2003) Non-coding plastid trnT-trnF sequences reveal a well resolved phylogeny of basal angiosperms. Journal of Evolutionary Biology 16, 558-576.
8. Bremer, B., Bremer, K., Heidari, N., Erixon, P., and Olmstead, R. G. (2002) Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels. Molecular Phylogenetics and Evolution 24, 274-301.
9. Chiba, T., Harada, T., Goto, S., Ishikawa, R., and Niizeki, M. (1996) Transcription of tRNA genes from large-scale plastid DNA deletion clearly reveals the action of nuclear-encoded RNA polymerase in the plastid. Journal of Plant Physiology 148, 652-656.
10. Doyle, J. J. and Doyle, J. L. (1990) Isolation of plant DNA from fresh tissue. Focus 12, 13-15.
11. Engler, A. (1897) Scrophulariaceae africanae II. Botanische Jahrbücher für Systematik, Pflanzengeschichte und Pflanzengeographie 23, 500-5002.
12. Fischer, E. (1989) Crepidorhopalon, a new genus with the relationship of Craterostigma, Torenia and Lindernia (Scrophulariaceae) with two new or note-worthy species from Central and South Central Africa (Zaire, Zambia). Feddes Repertorium 100, 439-450.
13. Fischer, E. (1992) Systematik der afrikanischen Lindernieae (Scrophulariaceae). Tropische und subtropische Pflanzenwelt 82, 1-365.
14. Fischer, E. (2004) Scrophulariaceae. In The Families and Genera of Vascular Plants (Kubitzki, K., ed.), Berlin: Springer, 333-432.
15. Gaff, D. (1971) Desiccation tolerant flowering plants in Southern Africa. Science 174, 1033-1034.
16. Graham, S. W., Reeves, P. A., Burns, A. C. E., and Olmstead, R. G. (2000) Microstructural changes ion noncoding chloroplast DNA: Interpretation, evolution, and utility of indels and inversions in basal angiosperm phylogenetic inference. International Journal of Plant Science 161, S83-S96.
17. Hallier, H. (1903) Ueber die Abgrenzung und Verwandtschaft der einzelnen Sippen bei den Scrophularineen. Bulletin de la Herbarium Boissier, 2me série 3, 181-207.
18. Hartl, D. (1955) Das Vorkommen rhinanthoider Knospendeckung bei Lindenbergia Lehm., einer Gattung der Scrophulariaceae-Antirrhinoideae. Österreichische Botanische Zeitschrift 102, 80-83.
19. Hartl, D. (1959) Das alveolierte Endosperm bei Scrophulariaceen, seine Entstehung, Anatomie und taxonomische Bedeutung. Beiträge zur Biologie der Pflanzen 35, 95-110.
20. Hepper, F. N. (1987 a) Two new species of East African Craterostigma (Scrophulariaceae). Kew Bulletin 42, 945-946.
21. Hepper, F. N. (1987 b) Transfer of three tropical African species of Craterostigma to Torenia (Scrophulariaceae). Boletim da Sociedade Broteriana, Série 2, 271-272.
22. Hilu, K. W., Borsch, T., Müller, K., Soltis, D. E., Soltis, P. S., Savolainen, V., Chase, M., Powell, M., Alice, L. A., Evans, R., Sauquet, H., Neinhuis, C., Slotta, T. A., Rohwer, J. G., Campbell, C. S., and Chatrou, L. (2003) Angiosperm phylogeny based on matK sequence information. American Journal of Botany 90, 1758-1776.
23. Hjertson, M. (1995) Taxonomy, phylogeny and biogeography of Lindenbergia (Scrophulariaceae). Botanical Journal of the Linnean Society 119, 265-321.
24. Huelsenbeck, J. P. and Ronquist, F. (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755.
25. Huelsenbeck, J. P., Ronquist, F., Nielsen, R., and Bollback, J. P. (2001) Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294, 2310-2314.
26. Huelsenbeck, J. P., Larget, B., Miller, R. E., and Ronquist, F. (2002) Potential Applications and Pitfalls of Bayesian Inference of Phylogeny. Systematic Biology 51, 673-688.
27. Kelchner, S. A. (2000) The evolution of non-coding chloroplast DNA and its application in plant systematics. Annals of the Missouri Botanical Garden 87, 482-498.
28. Löhne, C. and Borsch, T. (in press) Phylogenetic utility and molecular evolution of the petD group II intron in basal angiosperms. Molecular and Biological Evolution.
29. Magallon, S., Crane, P. R., and Herendeen, P. S. (1999) Phylogenetic pattern, diversity, and diversification of eudicots. Annals of the Missouri Botanical Garden 86, 297-372.
30. Magin, N., Classen, R., and Gack, C. (1989) The morphology of false anthers in Craterostigma plantagineum and Torenia polygonioides (Scrophulariaceae). Canadian Journal of Botany 67, 1931-1937.
31. Müller, J. and Müller, K. (2003) QuickAlign: A New Alignment Editor. Plant Molecular Biology Reporter 21, 5.
32. Müller, K. (2004) PRAP - computation of Bremer support for large data sets. Molecular Phylogenetics and Evolution 31, 780-782.
33. Müller, K. and Borsch T. (in press) Phylogenetics of Utricularia (Lentibulariaceae) and molecular evolution of the trnK intron in a lineage with high substitutional rates. Plant Systematics and Evolution.
34. Müller, K., Borsch, T., Legendre, L., Porembski, S., Theisen, I., and Barthlott, W. (2004) Evolution of carnivory in Lentibulariaceae and the Lamiales. Plant Biology 6, 477-490.
35. Müller, K. (in press) SeqState - primer design and sequence statistics for phylogenetic DNA data sets. Applied Bioinformatics.
36. Nakai, T. (1949) Classes, ordinae, familiae, subfamilieae, tribus, genera nova quae attinent ad plantas Koreanas. Journal of Japanese Botany 24, 8-14.
37. Neuhaus, H. and Link, G. (1987) The chloroplast tRNALys(UUU) gene from mustard (Sinapis alba) contains a class II intron potentially coding for a maturase related polypeptide. Current Genetics 11, 251-257.
38. Obermeyer, A. A. (1967) Lindernia intrepidus, South West Africa. In The Flowering Plants of Africa, Vol. 38, pl. 1503. Pretoria: Dept. of Agricultural Technical Services.
39. Olmstead, R. G. and Reeves, P. A. (1995) Evidence for the polyphyly of the Scrophulariaceae based on chloroplast rbcL and ndhF sequences. Annals of the Missouri Botanical Garden 82, 176-193.
40. Olmstead, R. G., DePamphilis, C. W., Wolfe, A. D., Young, N. D., Elisons, W. J., and Reeves, P. A. (2001) Disintegration of the Scrophulariaceae. American Journal of Botany 88, 348-361.
41. Pennell, F. W. (1935) The Scrophulariaceae of Eastern Temperate North America. Academy of Natural Sciences of Philadelphia Monograph 1, 1-650.
42. Philippi, G. (1996) Scrophulariaceae. In Die Farn- und Blütenpflanzen Baden-Württembergs (Sebald, O. et al., eds.), Stuttgart: Eugen Ulmer.
43. Posada, D. and Crandall, K. A. (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817-818.
44. Reichenbach, H. G. (1831) Scrophulariaceae. Flora Germanica Excursoria 1, 385 ff.
45. Rodriguez, F. J., Oliver, J. L., Marín, A., and Medina, J. R. (1990) The general stochastic model of nucleotide substitution. Journal of Theoretical Biology 142, 485-501.
46. Ronquist, F. and Huelsenbeck, J. P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574.
47. Simmons, M. P. and Ochoterena, H. (2000) Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology 49, 369-381.
48. Soltis, D. E., Soltis, P. S., Chase, M. W., Mort, M. E., Albach, D. C., Zanis, M., Savolainen, V., Hahn, W. H., Hoot, S. B., Fay, M. F., Axtell, M., Swensen, S. M., Prince, L. M., Kress, W. J., Nixon, K. C., and Farris, J. S. (2000) Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences. Botanical Journal of the Linnean Society 133, 381-461.
49. Swofford, D. L., Olsen, G., Waddell, P. J., and Hillis, D. M. (1996) Phylogenetic inference. In Molecular Systematics (Hillis, D. M. et al., eds.), Sunderland: Sinauer.
50. Swofford, D. L. (1998) PAUP*. Phylogenetic Analysis Using Parsimony (*and other Methods). Sunderland: Sinauer Associates.
51. Takhtajan, A. (1997) Diversity and Classification of Flowering Plants. New York: Columbia University Press.
52. Urban, I. (1884) Studien über die Scrophulariaceen-Gattungen Ilysanthes, Bonnaya, Vandellia und Lindernia. Bericht der Deutschen Botanischen Gesellschaft 2, 429-442.
53. Wettstein, R. v. (1891) Scrophulariaceae. In Die natürlichen Pflanzenfamilien 4 (Engler, A. and Prantl, K., eds.), Leipzig: Engelmann.
54. Yamazaki, T. (1954) Notes on Lindernia, Vandellia, Torenia and their allied genera in Eastern Asia I. Journal of Japanese Botany 29, 299-306.
55. Young, N. D., Steiner, K. E., and DePamphilis, C. W. (1999) The evolution of parasitism in Scrophulariaceae/Orobanchaceae: Plastid gene sequences refute an evolutionary transition series. Annals of the Missouri Botanical Garden 86, 876-893.