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Volumn 67, Issue 2, 2005, Pages 75-83

Backward simulation of ancestors of sampled individuals

Author keywords

Chromosome simulation; Coalescent; Complex pedigrees; Dirichlet distribution; P lya urn

Indexed keywords

BREEDING POPULATION; COALESCENCE; GENE FLOW; MATING BEHAVIOR; MONOGAMY; POPULATION MODELING; POPULATION SIZE;

EID: 13744255577     PISSN: 00405809     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tpb.2004.08.003     Document Type: Article
Times cited : (20)

References (43)
  • 1
    • 0002617436 scopus 로고
    • Ferguson distributions via Polya urn schemes
    • D. Blackwell, and J.B. MacQueen Ferguson distributions via Polya urn schemes Ann. Stat. 1 1973 353 355
    • (1973) Ann. Stat. , vol.1 , pp. 353-355
    • Blackwell, D.1    MacQueen, J.B.2
  • 2
    • 0141790880 scopus 로고    scopus 로고
    • DNA-based methods for pedigree reconstruction and kinship analysis in natural populations
    • M.S. Blouin DNA-based methods for pedigree reconstruction and kinship analysis in natural populations Trends Ecol. Evol. 18 2003 503 511
    • (2003) Trends Ecol. Evol. , vol.18 , pp. 503-511
    • Blouin, M.S.1
  • 3
    • 0000067183 scopus 로고
    • Latent roots of certain Markov chains arising in genetics - New approach part 2: Further haploid models
    • C. Cannings Latent roots of certain Markov chains arising in genetics - new approach part 2 Further haploid models Adv. Appl. Probab. 7 1975 264 282
    • (1975) Adv. Appl. Probab. , vol.7 , pp. 264-282
    • Cannings, C.1
  • 4
    • 0037314090 scopus 로고    scopus 로고
    • Fractional populations in multiple gene inheritance
    • M.-H. Chung, C.K. Kim, and K. Nahm Fractional populations in multiple gene inheritance Bioinformatics 19 2003 256 260
    • (2003) Bioinformatics , vol.19 , pp. 256-260
    • Chung, M.-H.1    Kim, C.K.2    Nahm, K.3
  • 5
    • 0028151261 scopus 로고
    • Empirical threshold values for quantitative trait mapping
    • G.A. Churchill, and R.W. Doerge Empirical threshold values for quantitative trait mapping Genetics 138 1994 963 971
    • (1994) Genetics , vol.138 , pp. 963-971
    • Churchill, G.A.1    Doerge, R.W.2
  • 6
    • 0028803358 scopus 로고
    • Advanced intercross lines, an experimental population for fine genetic mapping
    • A. Darvasi, and M. Soller Advanced intercross lines, an experimental population for fine genetic mapping Genetics 141 1995 1199 1207
    • (1995) Genetics , vol.141 , pp. 1199-1207
    • Darvasi, A.1    Soller, M.2
  • 7
    • 0029918883 scopus 로고
    • Nonparametric simulation-based statistics for detecting linkage in general pedigrees
    • S. Davies, M. Schroeder, L.R. Goldin, and D.E. Weeks Nonparametric simulation-based statistics for detecting linkage in general pedigrees Am. J. Hum. Genet. 58 1995 867 880
    • (1995) Am. J. Hum. Genet. , vol.58 , pp. 867-880
    • Davies, S.1    Schroeder, M.2    Goldin, L.R.3    Weeks, D.E.4
  • 8
    • 0034532483 scopus 로고    scopus 로고
    • A note on algorithms for genotype and allele elimination in complex pedigrees with incomplete genotype data
    • F.-X. Du, and I. Hoeschele A note on algorithms for genotype and allele elimination in complex pedigrees with incomplete genotype data Genetics 156 2000 2051 2062
    • (2000) Genetics , vol.156 , pp. 2051-2062
    • Du, F.-X.1    Hoeschele, I.2
  • 9
    • 0033180294 scopus 로고    scopus 로고
    • MINIREVIEW Coalescing into the 21st century: An overview and prospects of coalescent theory
    • Y.-X. Fu, and W.-H. Li MINIREVIEW Coalescing into the 21st century an overview and prospects of coalescent theory Theor. Popul. Biol. 56 1999 1 10
    • (1999) Theor. Popul. Biol. , vol.56 , pp. 1-10
    • Fu, Y.-X.1    Li, W.-H.2
  • 10
    • 13744254440 scopus 로고
    • A method for simulating familial disease data with variable age at onset and genetic and environmental effects
    • W.J. Gauderman A method for simulating familial disease data with variable age at onset and genetic and environmental effects Statist. Comput. 5 1995 237 243
    • (1995) Statist. Comput. , vol.5 , pp. 237-243
    • Gauderman, W.J.1
  • 11
    • 0030498194 scopus 로고    scopus 로고
    • Ancestral inference from samples of DNA sequences with recombination
    • R.C. Griffiths, and P. Marjoram Ancestral inference from samples of DNA sequences with recombination J. Comput. Biol. 3 1996 479 502
    • (1996) J. Comput. Biol. , vol.3 , pp. 479-502
    • Griffiths, R.C.1    Marjoram, P.2
  • 13
    • 0031961877 scopus 로고    scopus 로고
    • Generating consistent genotypic configuration for multi-allelic loci and large complex pedigrees
    • S.C. Heath Generating consistent genotypic configuration for multi-allelic loci and large complex pedigrees Hum. Hered. 48 1998 1 11
    • (1998) Hum. Hered. , vol.48 , pp. 1-11
    • Heath, S.C.1
  • 14
    • 0020744702 scopus 로고
    • Properties of a neutral allele model with intragenic recombination
    • R.R. Hudson Properties of a neutral allele model with intragenic recombination Theor. Popul. Biol. 23 1993 183 201
    • (1993) Theor. Popul. Biol. , vol.23 , pp. 183-201
    • Hudson, R.R.1
  • 15
    • 0041356952 scopus 로고    scopus 로고
    • Bayesian analysis of multilocus association in quantitative and qualitative traits
    • R. Kilpikari, and M.J. Sillanpää Bayesian analysis of multilocus association in quantitative and qualitative traits Genet. Epidemiol. 25 2003 122 135
    • (2003) Genet. Epidemiol. , vol.25 , pp. 122-135
    • Kilpikari, R.1    Sillanpää, M.J.2
  • 17
    • 0033809986 scopus 로고    scopus 로고
    • Sampling among haplotype resolutions in a coalescent-based genealogy sampler
    • M. Kuhner, and J. Felsenstein Sampling among haplotype resolutions in a coalescent-based genealogy sampler Genet. Epidemiol. 19 Suppl. 1 2000 515 521
    • (2000) Genet. Epidemiol. , vol.19 , Issue.1 SUPPL. , pp. 515-521
    • Kuhner, M.1    Felsenstein, J.2
  • 18
    • 2342600219 scopus 로고    scopus 로고
    • Powerful allele sharing statistics for nonparametric linkage analysis
    • E.M. Lange, and K. Lange Powerful allele sharing statistics for nonparametric linkage analysis Hum. Hered. 57 2004 49 58
    • (2004) Hum. Hered. , vol.57 , pp. 49-58
    • Lange, E.M.1    Lange, K.2
  • 19
    • 0036725038 scopus 로고    scopus 로고
    • Gene mapping via the ancestral recombination graph
    • F. Larribe, S. Lessard, and N.J. Schork Gene mapping via the ancestral recombination graph Theor. Popul. Biol. 62 2002 215 229
    • (2002) Theor. Popul. Biol. , vol.62 , pp. 215-229
    • Larribe, F.1    Lessard, S.2    Schork, N.J.3
  • 21
    • 0032827782 scopus 로고    scopus 로고
    • The power of association studies to detect the contribution of candidate genetic loci to variation in complex traits
    • A.D. Long, and C.H. Langley The power of association studies to detect the contribution of candidate genetic loci to variation in complex traits Genome Res. 9 1999 720 731
    • (1999) Genome Res. , vol.9 , pp. 720-731
    • Long, A.D.1    Langley, C.H.2
  • 22
    • 0037772441 scopus 로고    scopus 로고
    • Finding starting points for Markov chain Monte Carlo analysis of genetic data from large and complex pedigrees
    • Y. Luo, and S. Lin Finding starting points for Markov chain Monte Carlo analysis of genetic data from large and complex pedigrees Genet. Epidemiol. 25 2003 14 24
    • (2003) Genet. Epidemiol. , vol.25 , pp. 14-24
    • Luo, Y.1    Lin, S.2
  • 23
    • 0035989447 scopus 로고    scopus 로고
    • Precision and high-resolution mapping of quantitative trait loci by use of recurrent selection, backcross or intercross schemes
    • Z.W. Luo, C.-I. Wu, and M.J. Kearsey Precision and high-resolution mapping of quantitative trait loci by use of recurrent selection, backcross or intercross schemes Genetics 161 2002 915 929
    • (2002) Genetics , vol.161 , pp. 915-929
    • Luo, Z.W.1    Wu, C.-I.2    Kearsey, M.J.3
  • 25
    • 0034055765 scopus 로고    scopus 로고
    • Fine mapping of quantitative trait loci using linkage disequilibiria with closely linked marker loci
    • T.H.E. Meuwissen, and M.E. Goddard Fine mapping of quantitative trait loci using linkage disequilibiria with closely linked marker loci Genetics 155 2000 421 430
    • (2000) Genetics , vol.155 , pp. 421-430
    • Meuwissen, T.H.E.1    Goddard, M.E.2
  • 26
    • 2442597278 scopus 로고    scopus 로고
    • Mapping multiple QTL using linkage disequilibrium and linkage analysis information and multitrait data
    • T.H.E. Meuwissen, and M.E. Goddard Mapping multiple QTL using linkage disequilibrium and linkage analysis information and multitrait data Genet. Sel. Evol. 36 2004 261 279
    • (2004) Genet. Sel. Evol. , vol.36 , pp. 261-279
    • Meuwissen, T.H.E.1    Goddard, M.E.2
  • 27
    • 0035470867 scopus 로고    scopus 로고
    • A classification of coalescent processes for haploid exchangeable population models
    • M. Möhle, and S. Sagitov A classification of coalescent processes for haploid exchangeable population models Ann. Probab. 29 2001 1547 1562
    • (2001) Ann. Probab. , vol.29 , pp. 1547-1562
    • Möhle, M.1    Sagitov, S.2
  • 28
    • 10744222533 scopus 로고    scopus 로고
    • Coalescent patterns in diploid exchangeable population models
    • M. Möhle, and S. Sagitov Coalescent patterns in diploid exchangeable population models J. Math. Biol. 47 2003 337 352
    • (2003) J. Math. Biol. , vol.47 , pp. 337-352
    • Möhle, M.1    Sagitov, S.2
  • 29
    • 0036177752 scopus 로고    scopus 로고
    • Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies
    • A.P. Morris, J.C. Whittaker, and D.J. Balding Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies Am. J. Hum. Genet. 70 2002 686 707
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 686-707
    • Morris, A.P.1    Whittaker, J.C.2    Balding, D.J.3
  • 30
    • 0036468808 scopus 로고    scopus 로고
    • Linkage disequilibrium: What history has to tell us
    • M. Nordborg, and S. Tavaré Linkage disequilibrium what history has to tell us Trends Genet. 18 2002 83 90
    • (2002) Trends Genet. , vol.18 , pp. 83-90
    • Nordborg, M.1    Tavaré, S.2
  • 32
    • 0037396706 scopus 로고    scopus 로고
    • Fine mapping of complex trait genes combining pedigree and linkage disequilibrium information: A Bayesian unified framework
    • M. Perez-Enciso Fine mapping of complex trait genes combining pedigree and linkage disequilibrium information a Bayesian unified framework Genetics 163 2003 1497 1510
    • (2003) Genetics , vol.163 , pp. 1497-1510
    • Perez-Enciso, M.1
  • 34
    • 0031659889 scopus 로고    scopus 로고
    • QU-GENE: A simulation platform for quantitative analysis of genetic models
    • D.W. Podlich, and M. Cooper QU-GENE a simulation platform for quantitative analysis of genetic models Bioinformatics 14 1998 632 653
    • (1998) Bioinformatics , vol.14 , pp. 632-653
    • Podlich, D.W.1    Cooper, M.2
  • 35
    • 0345530848 scopus 로고    scopus 로고
    • An examination of problem-based teaching and learning in population genetics and evolution using EVOLVE, a computer simulation
    • P. Soderberg, and F. Price An examination of problem-based teaching and learning in population genetics and evolution using EVOLVE, a computer simulation Int. J. Sci. Educ. 25 2003 35 55
    • (2003) Int. J. Sci. Educ. , vol.25 , pp. 35-55
    • Soderberg, P.1    Price, F.2
  • 36
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • M. Stephens, N.J. Smith, and P. Donnelly A new statistical method for haplotype reconstruction from population data Am. J. Hum. Genet. 68 2001 978 989
    • (2001) Am. J. Hum. Genet. , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 37
    • 0036735029 scopus 로고    scopus 로고
    • METASIM 1.0: An individual-based environment for simulating population genetics of complex population dynamics
    • A.E. Strand METASIM 1.0 an individual-based environment for simulating population genetics of complex population dynamics Mol. Ecol. Notes 2 2002 373 376
    • (2002) Mol. Ecol. Notes , vol.2 , pp. 373-376
    • Strand, A.E.1
  • 38
    • 0031440865 scopus 로고    scopus 로고
    • Genomic sharing surrounding alleles identical by descent: Effects of genetic drift and population growth
    • G.J. te Meerman, and M.A. van der Meulen Genomic sharing surrounding alleles identical by descent effects of genetic drift and population growth Genet. Epidemiol. 14 1997 1125 1130
    • (1997) Genet. Epidemiol. , vol.14 , pp. 1125-1130
    • Te Meerman, G.J.1    Van Der Meulen, M.A.2
  • 39
    • 0027213849 scopus 로고
    • Chromosome-based method for rapid computer simulation in human genetic linkage analysis
    • J.D. Terwilliger, M. Speer, and J. Ott Chromosome-based method for rapid computer simulation in human genetic linkage analysis Genet. Epidemiol. 10 1993 217 224
    • (1993) Genet. Epidemiol. , vol.10 , pp. 217-224
    • Terwilliger, J.D.1    Speer, M.2    Ott, J.3
  • 40
    • 0034752971 scopus 로고    scopus 로고
    • Bayesian oligogenic analysis of quantitative and qualitative traits in general pedigrees
    • P. Uimari, and M.J. Sillanpää Bayesian oligogenic analysis of quantitative and qualitative traits in general pedigrees Genet. Epidemiol. 21 2001 224 242
    • (2001) Genet. Epidemiol. , vol.21 , pp. 224-242
    • Uimari, P.1    Sillanpää, M.J.2
  • 41
    • 0003021705 scopus 로고    scopus 로고
    • Association and haplotype sharing due to identity by descent, with an application to genetic mapping
    • I.H. Pawlowitzki J.H. Edwards E.A. Thompson Academic Press San Diego
    • M.A. van der Meulen, and G.J. te Meerman Association and haplotype sharing due to identity by descent, with an application to genetic mapping I.H. Pawlowitzki J.H. Edwards E.A. Thompson Genetic Mapping of Disease Genes 1997 Academic Press San Diego 115 136
    • (1997) Genetic Mapping of Disease Genes , pp. 115-136
    • Van Der Meulen, M.A.1    Te Meerman, G.J.2
  • 42
    • 0033364957 scopus 로고    scopus 로고
    • On a randomization procedure in linkage analysis
    • H. Zhao, K.R. Merikangas, and K.K. Kidd On a randomization procedure in linkage analysis Am. J. Hum. Genet. 65 1999 1449 1456
    • (1999) Am. J. Hum. Genet. , vol.65 , pp. 1449-1456
    • Zhao, H.1    Merikangas, K.R.2    Kidd, K.K.3
  • 43
    • 0033942186 scopus 로고    scopus 로고
    • A coalescent approach to study linkage disequilibrium between single-nucleotide polymorphisms
    • S. Zöllner, and A. von Haeseler A coalescent approach to study linkage disequilibrium between single-nucleotide polymorphisms Am. J. Hum. Genet. 66 2000 615 628
    • (2000) Am. J. Hum. Genet. , vol.66 , pp. 615-628
    • Zöllner, S.1    Von Haeseler, A.2


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