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Volumn 25, Issue 1, 2003, Pages 14-24

Finding starting points for Markov chain Monte Carlo analysis of genetic data from large and complex pedigrees

Author keywords

Genotypic configuration; Heated Gibbs sampler; Heated relaxed penetrance; Hutterite pedigree; Inheritance vector; Irreducibility; START

Indexed keywords

ALGORITHM; ARTICLE; DNA POLYMORPHISM; GENETIC EPIDEMIOLOGY; GENETIC HETEROGENEITY; GENOTYPE; HUMAN; MONTE CARLO METHOD; PEDIGREE; PENETRANCE; POPULATION GENETICS; PROBABILITY;

EID: 0037772441     PISSN: 07410395     EISSN: None     Source Type: Journal    
DOI: 10.1002/gepi.10243     Document Type: Article
Times cited : (5)

References (29)
  • 1
    • 0036201581 scopus 로고    scopus 로고
    • Quantitative-trait homozygosity and association mapping and empirical genomewide significance in large, complex pedigrees: Fasting serum-insulin level in the Hutterites
    • Abney M, Ober C, McPeek MS. 2002. Quantitative-trait homozygosity and association mapping and empirical genomewide significance in large, complex pedigrees: fasting serum-insulin level in the Hutterites. Am J Hum Genet 70:920-34.
    • (2002) Am J Hum Genet , vol.70 , pp. 920-934
    • Abney, M.1    Ober, C.2    McPeek, M.S.3
  • 2
    • 0030881661 scopus 로고    scopus 로고
    • Accurate inference of relationships in sib-pair linkage studies
    • Boehnke M, Cox NJ. 1997. Accurate inference of relationships in sib-pair linkage studies. Am J Hum Genet 61:423-29.
    • (1997) Am J Hum Genet , vol.61 , pp. 423-429
    • Boehnke, M.1    Cox, N.J.2
  • 3
    • 0032231347 scopus 로고    scopus 로고
    • Estimation of pairwise relationships in the presence of genotyping errors
    • Broman KW, Weber JL. 1998. Estimation of pairwise relationships in the presence of genotyping errors. Am J Hum Genet 63:1563-64.
    • (1998) Am J Hum Genet , vol.63 , pp. 1563-1564
    • Broman, K.W.1    Weber, J.L.2
  • 5
    • 0031941448 scopus 로고    scopus 로고
    • A test statistic to detect errors in sib-pair relationships
    • Ehm MG, Wagner M. 1998. A test statistic to detect errors in sib-pair relationships. Am J Hum Genet 62:181-88.
    • (1998) Am J Hum Genet , vol.62 , pp. 181-188
    • Ehm, M.G.1    Wagner, M.2
  • 6
    • 0015183542 scopus 로고
    • A general model for the genetic analysis of pedigree data
    • Elston RC and Stewart RC. 1971. A General model for the genetic analysis of pedigree data. Hum Hered 21:523-42.
    • (1971) Hum Hered , vol.21 , pp. 523-542
    • Elston, R.C.1    Stewart, R.C.2
  • 7
    • 0033759689 scopus 로고    scopus 로고
    • Improved inference of relationship for pairs of individuals
    • Epstein MP, Duren WL, Boehnke M. 2000. Improved inference of relationship for pairs of individuals. Am J Hum Genet 67:1219-31.
    • (2000) Am J Hum Genet , vol.67 , pp. 1219-1231
    • Epstein, M.P.1    Duren, W.L.2    Boehnke, M.3
  • 8
    • 0021518209 scopus 로고
    • Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images
    • Geman S, Geman D. 1984. Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images. IEEE Trans Pattern Anal 6:721-41.
    • (1984) IEEE Trans Pattern Anal , vol.6 , pp. 721-741
    • Geman, S.1    Geman, D.2
  • 9
    • 0030927756 scopus 로고    scopus 로고
    • Relationship estimation in affected sib pair analysis of late-onset diseases
    • Göring H, Ott J. 1997. Relationship estimation in affected sib pair analysis of late-onset diseases. Eur J Hum Genet 5:69-77.
    • (1997) Eur J Hum Genet , vol.5 , pp. 69-77
    • Göring, H.1    Ott, J.2
  • 10
    • 77956890234 scopus 로고
    • Monte Carlo sampling methods using Markov chains and their applications
    • Hastings WK. 1970. Monte Carlo sampling methods using Markov chains and their applications. Biometrika 57:97-109.
    • (1970) Biometrika , vol.57 , pp. 97-109
    • Hastings, W.K.1
  • 11
    • 0031961877 scopus 로고    scopus 로고
    • Generating consistent genotypic configurations for multi-allelic loci and large complex pedigrees
    • Heath SC. 1998. Generating consistent genotypic configurations for multi-allelic loci and large complex pedigrees. Hum Hered 48:1-11.
    • (1998) Hum Hered , vol.48 , pp. 1-11
    • Heath, S.C.1
  • 13
    • 0027996246 scopus 로고
    • Sequential imputation for multilocus linkage analysis
    • Irwin M, Cox N, Kong A. 1994. Sequential imputation for multilocus linkage analysis. Proc Natl Acad Sci USA 91:11684-88.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 11684-11688
    • Irwin, M.1    Cox, N.2    Kong, A.3
  • 14
    • 0000803318 scopus 로고
    • Construction of multilocus genetic maps in humans
    • Lander ES, Green P. 1987. Construction of multilocus genetic maps in humans. Proc Natl Acad Sci USA 84:2363-67.
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 2363-2367
    • Lander, E.S.1    Green, P.2
  • 15
    • 77957186854 scopus 로고
    • Achieving irreducibility of the Markov chain Monte Carlo method applied to pedigree data
    • Lin SL, Thompson EA, Wijsman E. 1993. Achieving irreducibility of the Markov chain Monte Carlo method applied to pedigree data. IMA J Math Appl Med Biol 10:1-17.
    • (1993) IMA J Math Appl Med Biol , vol.10 , pp. 1-17
    • Lin, S.L.1    Thompson, E.A.2    Wijsman, E.3
  • 16
    • 0027996281 scopus 로고
    • An algorithm for Monte-Carlo estimation of genotype probabilities on complex pedigrees
    • Lin S, Thompson EA, Wijsman EA. 1994. An algorithm for Monte-Carlo estimation of genotype probabilities on complex pedigrees. Ann Hum Genet 58:343-57.
    • (1994) Ann Hum Genet , vol.58 , pp. 343-357
    • Lin, S.1    Thompson, E.A.2    Wijsman, E.A.3
  • 17
    • 0034792979 scopus 로고    scopus 로고
    • Two-locus modeling of asthma in a Hutterite pedigree via Markov chain Monte Carlo
    • Luo YQ, Lin SL, Irwin ME. 2001. Two-locus modeling of asthma in a Hutterite pedigree via Markov chain Monte Carlo. Genet Epidemiol [Suppl] 21:24-9.
    • (2001) Genet Epidemiol , vol.21 , Issue.SUPPL. , pp. 24-29
    • Luo, Y.Q.1    Lin, S.L.2    Irwin, M.E.3
  • 18
    • 0033912689 scopus 로고    scopus 로고
    • Statistical tests for detection of misspecified relationships by use of genome-screen data
    • McPeek M, Sun L. 2000. Statistical tests for detection of misspecified relationships by use of genome-screen data. Am J Hum Genet 66:1076-94.
    • (2000) Am J Hum Genet , vol.66 , pp. 1076-1094
    • McPeek, M.1    Sun, L.2
  • 20
    • 0034787710 scopus 로고    scopus 로고
    • Description of three data sets: Collaborative study on the Genetics of Asthma (CSGA), the German affected sib-pair study, and the Hutterites of South Dakota
    • Meyers DA, Wjst M, Ober C. 2001. Description of three data sets: Collaborative study on the Genetics of Asthma (CSGA), the German affected sib-pair study, and the Hutterites of South Dakota. Genet Epidemiol [Suppl] 21:4-8.
    • (2001) Genet Epidemiol , vol.21 , Issue.SUPPL. , pp. 4-8
    • Meyers, D.A.1    Wjst, M.2    Ober, C.3
  • 21
    • 0033759713 scopus 로고    scopus 로고
    • A second-generation genomewide screen for Asthma-susceptibility alleles in a founder population
    • Ober C, Tsalenko A, Parry R, Cox NJ. 2000. A second-generation genomewide screen for Asthma-susceptibility alleles in a founder population. Am J Hum Genet 67:1154-62.
    • (2000) Am J Hum Genet , vol.67 , pp. 1154-1162
    • Ober, C.1    Tsalenko, A.2    Parry, R.3    Cox, N.J.4
  • 22
    • 0032231941 scopus 로고    scopus 로고
    • PedCheck: A program for identification of genotype incompatibilities in linkage analysis
    • O'Connell JR, Weeks DE. 1998. PedCheck: a program for identification of genotype incompatibilities in linkage analysis. Am J Hum Genet 63:259-66.
    • (1998) Am J Hum Genet , vol.63 , pp. 259-266
    • O'Connell, J.R.1    Weeks, D.E.2
  • 23
    • 0027205090 scopus 로고
    • On the irreducibility of a Markov Chain defined on a space of genotype configurations by a sampling scheme
    • Sheehan N, Thomas A. 1993. On the irreducibility of a Markov Chain defined on a space of genotype configurations by a sampling scheme. Biometrics 49:163-75.
    • (1993) Biometrics , vol.49 , pp. 163-175
    • Sheehan, N.1    Thomas, A.2
  • 24
    • 0036138188 scopus 로고    scopus 로고
    • Relationship inference from trios of individuals, in the presence of typing error
    • Sieberts SK, Wijsman EM, Thompson EA. 2002. Relationship inference from trios of individuals, in the presence of typing error. Am J Hum Genet 70:170-80.
    • (2002) Am J Hum Genet , vol.70 , pp. 170-180
    • Sieberts, S.K.1    Wijsman, E.M.2    Thompson, E.A.3
  • 26
    • 0029846120 scopus 로고    scopus 로고
    • Identifying marker typing incompatibilities in linkage analysis
    • Stringham HM, Boehnke M. 1996. Identifying marker typing incompatibilities in linkage analysis. Am J Hum Genet 59:946-50.
    • (1996) Am J Hum Genet , vol.59 , pp. 946-950
    • Stringham, H.M.1    Boehnke, M.2
  • 28
    • 0034164171 scopus 로고    scopus 로고
    • MCMC estimation of multilocus genome sharing and multipoint gene location scores
    • Thompson EA. 2000. MCMC estimation of multilocus genome sharing and multipoint gene location scores. Int Stat Rev 68:53-73.
    • (2000) Int Stat Rev , vol.68 , pp. 53-73
    • Thompson, E.A.1
  • 29
    • 0024466726 scopus 로고
    • Recursive descent probabilities for rare recessive lethals
    • Thompson EA, Morgan K. 1989. Recursive descent probabilities for rare recessive lethals. Ann Hum Genet 53:357-74.
    • (1989) Ann Hum Genet , vol.53 , pp. 357-374
    • Thompson, E.A.1    Morgan, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.