메뉴 건너뛰기




Volumn 1727, Issue 2, 2005, Pages 97-105

Transcription arrest caused by long nascent RNA chains

Author keywords

DNA topology; R loop; RNA polymerase; RNase

Indexed keywords

DNA DIRECTED RNA POLYMERASE III; RIBONUCLEASE A; RNA;

EID: 13444257835     PISSN: 01674781     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbaexp.2004.12.006     Document Type: Article
Times cited : (16)

References (41)
  • 1
    • 0033529089 scopus 로고    scopus 로고
    • Structural basis for initiation of transcription from an RNA polymerase-promoter complex
    • G.M.T. Cheetham, D. Jeruzalmi, and T.A. Steitz Structural basis for initiation of transcription from an RNA polymerase-promoter complex Nature 399 1999 80 83
    • (1999) Nature , vol.399 , pp. 80-83
    • Cheetham, G.M.T.1    Jeruzalmi, D.2    Steitz, T.A.3
  • 2
    • 0033579380 scopus 로고    scopus 로고
    • Structure of a transcribing T7 RNA polymerase complex
    • G.M.T. Cheetham, and T.A. Steitz Structure of a transcribing T7 RNA polymerase complex Science 286 1999 2305 2309
    • (1999) Science , vol.286 , pp. 2305-2309
    • Cheetham, G.M.T.1    Steitz, T.A.2
  • 3
    • 0033578701 scopus 로고    scopus 로고
    • Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 Å resolution
    • G. Zhang, E.A. Campbell, L. Minakhin, C. Richter, K. Severinov, and S. Darst Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 Å resolution Cell 98 1999 811 824
    • (1999) Cell , vol.98 , pp. 811-824
    • Zhang, G.1    Campbell, E.A.2    Minakhin, L.3    Richter, C.4    Severinov, K.5    Darst, S.6
  • 4
    • 0035827346 scopus 로고    scopus 로고
    • Structural basis of transcription: RNA 28 angstrom resolution
    • P. Cramer, D.A. Bushnell, and R.D. Kornberg Structural basis of transcription: RNA 28 angstrom resolution Science 292 2001 1863 1876
    • (2001) Science , vol.292 , pp. 1863-1876
    • Cramer, P.1    Bushnell, D.A.2    Kornberg, R.D.3
  • 5
    • 0035827332 scopus 로고    scopus 로고
    • Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 a resolution
    • A.L. Gnatt, P. Cramer, J. Fu, D.A. Bushnell, and R.D. Kornberg Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution Science 292 2001 1876 1882
    • (2001) Science , vol.292 , pp. 1876-1882
    • Gnatt, A.L.1    Cramer, P.2    Fu, J.3    Bushnell, D.A.4    Kornberg, R.D.5
  • 6
    • 0037832543 scopus 로고    scopus 로고
    • Complete, 12-subunit RNA polymerase II at 4.1-A resolution: Implications for the initiation of transcription
    • D.A. Bushnell, and R.D. Kornberg Complete, 12-subunit RNA polymerase II at 4.1-A resolution: implications for the initiation of transcription Proc. Natl. Acad. Sci. U. S. A. 100 2003 6969 6973
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 6969-6973
    • Bushnell, D.A.1    Kornberg, R.D.2
  • 8
    • 0029818631 scopus 로고    scopus 로고
    • Transcription processivity: Protein-DNA interactions holding together the elongation complex
    • E. Nudler, E. Avetissova, V. Markovtsov, and A. Goldfarb Transcription processivity: protein-DNA interactions holding together the elongation complex Science 273 1996 211 217
    • (1996) Science , vol.273 , pp. 211-217
    • Nudler, E.1    Avetissova, E.2    Markovtsov, V.3    Goldfarb, A.4
  • 9
    • 0031552174 scopus 로고    scopus 로고
    • The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase
    • E. Nudler, A. Mustaev, E. Lukhtanov, and A. Goldfarb The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase Cell 89 1997 33 41
    • (1997) Cell , vol.89 , pp. 33-41
    • Nudler, E.1    Mustaev, A.2    Lukhtanov, E.3    Goldfarb, A.4
  • 10
    • 0032541021 scopus 로고    scopus 로고
    • Spatial organization of transcription elongation complex in Escherichia coli
    • E. Nudler, I. Gusarov, E. Avetissova, M. Kozlov, and A. Goldfarb Spatial organization of transcription elongation complex in Escherichia coli Science 281 1998 424 428
    • (1998) Science , vol.281 , pp. 424-428
    • Nudler, E.1    Gusarov, I.2    Avetissova, E.3    Kozlov, M.4    Goldfarb, A.5
  • 11
    • 0032584643 scopus 로고    scopus 로고
    • An integrated model of the transcription complex in elongation, termination, and editing
    • P.H. von Hippel An integrated model of the transcription complex in elongation, termination, and editing Science 281 1998 660 665
    • (1998) Science , vol.281 , pp. 660-665
    • Von Hippel, P.H.1
  • 12
    • 0033597378 scopus 로고    scopus 로고
    • Transcription elongation: Structural basis and mechanisms
    • E. Nudler Transcription elongation: structural basis and mechanisms J. Mol. Biol. 288 1999 1 12
    • (1999) J. Mol. Biol. , vol.288 , pp. 1-12
    • Nudler, E.1
  • 13
    • 0020964297 scopus 로고
    • Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements
    • J.J. Dunn, and F.W. Studier Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements J. Mol. Biol. 166 1983 477 535
    • (1983) J. Mol. Biol. , vol.166 , pp. 477-535
    • Dunn, J.J.1    Studier, F.W.2
  • 15
    • 0033120034 scopus 로고    scopus 로고
    • The mechanism of intrinsic transcription termination
    • I. Gusarov, and E. Nudler The mechanism of intrinsic transcription termination Mol. Cell 3 1999 495 504
    • (1999) Mol. Cell , vol.3 , pp. 495-504
    • Gusarov, I.1    Nudler, E.2
  • 16
    • 0033597435 scopus 로고    scopus 로고
    • Mechanism of intrinsic transcription termination and antitermination
    • W.S. Yarnell, and J.W. Roberts Mechanism of intrinsic transcription termination and antitermination Science 284 1999 611 615
    • (1999) Science , vol.284 , pp. 611-615
    • Yarnell, W.S.1    Roberts, J.W.2
  • 17
    • 0033539658 scopus 로고    scopus 로고
    • Non-equilibrium mechanism of transcription termination from observations of single RNA polymerase molecules
    • H. Yin, I. Artsimovitch, R. Landick, and J. Gelles Non-equilibrium mechanism of transcription termination from observations of single RNA polymerase molecules Proc. Natl. Acad. Sci. U. S. A. 96 1999 13124 13129
    • (1999) Proc. Natl. Acad. Sci. U. S. A. , vol.96 , pp. 13124-13129
    • Yin, H.1    Artsimovitch, I.2    Landick, R.3    Gelles, J.4
  • 18
    • 0022797369 scopus 로고
    • Single-stranded DNA 'blue' T7 promoter plasmids: A versatile tandem promoter system for cloning and protein engineering
    • D.A. Mead, E. Szczesna-Skorupa, and B. Kemper Single-stranded DNA 'blue' T7 promoter plasmids: a versatile tandem promoter system for cloning and protein engineering Protein Eng. 1 1986 67 74
    • (1986) Protein Eng. , vol.1 , pp. 67-74
    • Mead, D.A.1    Szczesna-Skorupa, E.2    Kemper, B.3
  • 19
    • 0029791944 scopus 로고    scopus 로고
    • Intrinsic termination of T7 RNA polymerase mediated by either RNA or DNA
    • L. Hartvig, and J. Christiansen Intrinsic termination of T7 RNA polymerase mediated by either RNA or DNA EMBO J. 15 1996 4767 4774
    • (1996) EMBO J. , vol.15 , pp. 4767-4774
    • Hartvig, L.1    Christiansen, J.2
  • 22
    • 0036464558 scopus 로고    scopus 로고
    • In vitro transcription of a torsionally constrained template
    • T. Bentin, and P.E. Nielsen In vitro transcription of a torsionally constrained template Nucleic Acids Res. 30 2002 803 809
    • (2002) Nucleic Acids Res. , vol.30 , pp. 803-809
    • Bentin, T.1    Nielsen, P.E.2
  • 25
    • 0034646628 scopus 로고    scopus 로고
    • RNase H overproduction corrects a defect at the level of transcription elongation during rRNA synthesis in the absence of DNA topoisomerase I in Escherichia coli
    • C. Hraiky, M.A. Raymond, and M. Drolet RNase H overproduction corrects a defect at the level of transcription elongation during rRNA synthesis in the absence of DNA topoisomerase I in Escherichia coli J. Biol. Chem. 275 2000 11257 11263
    • (2000) J. Biol. Chem. , vol.275 , pp. 11257-11263
    • Hraiky, C.1    Raymond, M.A.2    Drolet, M.3
  • 26
    • 0030995436 scopus 로고    scopus 로고
    • DNA topoisomerases regulate R-loop formation during transcription of the rrnB operon in Escherichia coli
    • E. Massé, P. Phoenix, and M. Drolet DNA topoisomerases regulate R-loop formation during transcription of the rrnB operon in Escherichia coli J. Biol. Chem. 272 1997 12816 12823
    • (1997) J. Biol. Chem. , vol.272 , pp. 12816-12823
    • Massé, E.1    Phoenix, P.2    Drolet, M.3
  • 27
    • 0031028203 scopus 로고    scopus 로고
    • Roles of DNA topoisomerases in the regulation of R-loop formation in vitro
    • P. Phoenix, M.A. Raymond, E. Massé, and M. Drolet Roles of DNA topoisomerases in the regulation of R-loop formation in vitro J. Biol. Chem. 272 1997 1473 1479
    • (1997) J. Biol. Chem. , vol.272 , pp. 1473-1479
    • Phoenix, P.1    Raymond, M.A.2    Massé, E.3    Drolet, M.4
  • 28
    • 0023433855 scopus 로고
    • Supercoiling of the DNA template during transcription
    • L.F. Liu, and J.C. Wang Supercoiling of the DNA template during transcription Proc. Natl. Acad. Sci. U. S. A. 84 1987 7024 7027
    • (1987) Proc. Natl. Acad. Sci. U. S. A. , vol.84 , pp. 7024-7027
    • Liu, L.F.1    Wang, J.C.2
  • 29
    • 0026542543 scopus 로고
    • The apical localization of transcribing RNA polymerases on supercoiled DNA prevents their rotation around the template
    • B. ten Heggeler-Bordier, W. Wahli, M. Adrian, A. Stasiak, and J. Dubochet The apical localization of transcribing RNA polymerases on supercoiled DNA prevents their rotation around the template EMBO J. 11 1992 667 672
    • (1992) EMBO J. , vol.11 , pp. 667-672
    • Ten Heggeler-Bordier, B.1    Wahli, W.2    Adrian, M.3    Stasiak, A.4    Dubochet, J.5
  • 30
    • 0030458354 scopus 로고    scopus 로고
    • T7 RNA polymerase cannot transcribe through a highly knotted DNA template
    • J. Portugal, and A. Rodriguez-Campos T7 RNA polymerase cannot transcribe through a highly knotted DNA template Nucleic Acids Res. 24 1996 4890 4894
    • (1996) Nucleic Acids Res. , vol.24 , pp. 4890-4894
    • Portugal, J.1    Rodriguez-Campos, A.2
  • 31
    • 0024323320 scopus 로고
    • Transcription mapping of the Escherichia coli chromosome by electron microscopy
    • S.L. French, and O.L. Miller Jr. Transcription mapping of the Escherichia coli chromosome by electron microscopy J. Bacteriol. 171 1989 4207 4216
    • (1989) J. Bacteriol. , vol.171 , pp. 4207-4216
    • French, S.L.1    Miller Jr., O.L.2
  • 32
    • 0026003204 scopus 로고
    • RRNA transcription rate in Escherichia coli
    • S.L. Gotta, O.L. Miller Jr., and S.L. French rRNA transcription rate in Escherichia coli J. Bacteriol. 173 1991 6647 6649
    • (1991) J. Bacteriol. , vol.173 , pp. 6647-6649
    • Gotta, S.L.1    Miller Jr., O.L.2    French, S.L.3
  • 33
    • 0028908039 scopus 로고
    • Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex
    • B. Liu, and B.M. Alberts Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex Science 267 1995 1131 1137
    • (1995) Science , vol.267 , pp. 1131-1137
    • Liu, B.1    Alberts, B.M.2
  • 34
    • 1842377482 scopus 로고    scopus 로고
    • Bacteriophage φ29 DNA replication arrest caused by codirectional collisions with the transcription machinery
    • M. Elías-Arnanz, and M. Salas Bacteriophage φ29 DNA replication arrest caused by codirectional collisions with the transcription machinery EMBO J. 16 1997 5775 5783
    • (1997) EMBO J. , vol.16 , pp. 5775-5783
    • Elías-Arnanz, M.1    Salas, M.2
  • 35
    • 0033570150 scopus 로고    scopus 로고
    • Resolution of head-on collisions between the transcription machinery and bacteriophage φ29 DNA polymerase is dependent on RNA polymerase translocation
    • M. Elías-Arnanz, and M. Salas Resolution of head-on collisions between the transcription machinery and bacteriophage φ29 DNA polymerase is dependent on RNA polymerase translocation EMBO J. 18 1999 5675 5682
    • (1999) EMBO J. , vol.18 , pp. 5675-5682
    • Elías-Arnanz, M.1    Salas, M.2
  • 36
    • 0038756088 scopus 로고    scopus 로고
    • Cooperation between RNA polymerase molecules in transcription elongation
    • V. Epshtein, and E. Nudler Cooperation between RNA polymerase molecules in transcription elongation Science 300 2003 801 805
    • (2003) Science , vol.300 , pp. 801-805
    • Epshtein, V.1    Nudler, E.2
  • 37
    • 0026725797 scopus 로고
    • Topoisomerases and yeast rRNA transcription: Negative supercoiling stimulates initiation and topoisomerase activity is required for elongation
    • M.C. Schultz, S.J. Brill, Q. Ju, R. Sternglanz, and R. Reeder Topoisomerases and yeast rRNA transcription: negative supercoiling stimulates initiation and topoisomerase activity is required for elongation Genes Dev. 6 1992 1332 1341
    • (1992) Genes Dev. , vol.6 , pp. 1332-1341
    • Schultz, M.C.1    Brill, S.J.2    Ju, Q.3    Sternglanz, R.4    Reeder, R.5
  • 38
    • 0023127037 scopus 로고
    • Need for DNA topoisomerase activity as a swivel for DNA replication and for transcription of ribosomal RNA
    • S.J. Brill, S. DiNardo, K. Voelkel-Meiman, and R. Sternglanz Need for DNA topoisomerase activity as a swivel for DNA replication and for transcription of ribosomal RNA Nature 326 1987 414 416
    • (1987) Nature , vol.326 , pp. 414-416
    • Brill, S.J.1    Dinardo, S.2    Voelkel-Meiman, K.3    Sternglanz, R.4
  • 39
    • 0033522905 scopus 로고    scopus 로고
    • Escherichia coli DNA topoisomerase 1 inhibits R-loop formation by relaxing transcription-induced negative supercoiling
    • E. Massé, and M. Drolet Escherichia coli DNA topoisomerase 1 inhibits R-loop formation by relaxing transcription-induced negative supercoiling J. Biol. Chem. 274 1999 16659 16664
    • (1999) J. Biol. Chem. , vol.274 , pp. 16659-16664
    • Massé, E.1    Drolet, M.2
  • 40
    • 0033568556 scopus 로고    scopus 로고
    • Identification of mammalian RNA polymerase I holoenzyme containing components of the DNA repair/replication system
    • R.D. Hannan, A. Cavanaugh, W.M. Hempel, T. Moss, and L. Rothblum Identification of mammalian RNA polymerase I holoenzyme containing components of the DNA repair/replication system Nucleic Acids Res. 27 1999 3720 3727
    • (1999) Nucleic Acids Res. , vol.27 , pp. 3720-3727
    • Hannan, R.D.1    Cavanaugh, A.2    Hempel, W.M.3    Moss, T.4    Rothblum, L.5
  • 41
    • 0023805882 scopus 로고
    • Association of DNA topoisomerase I and RNA polymerase I: A possible role for topoisomerase I in ribosomal gene transcription
    • K.M. Rose, J. Szopa, F.S. Han, Y.C. Cheng, A. Richter, and U. Scheer Association of DNA topoisomerase I and RNA polymerase I: a possible role for topoisomerase I in ribosomal gene transcription Chromosoma 96 1988 411 416
    • (1988) Chromosoma , vol.96 , pp. 411-416
    • Rose, K.M.1    Szopa, J.2    Han, F.S.3    Cheng, Y.C.4    Richter, A.5    Scheer, U.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.