Large scale and global features of complex genomic signals

Proceedings of SPIE - The International Society for Optical Engineering

Volumn 5068, Issue , 2002, Pages 112-121

  Cristea, Paul Dan ^a  

^a UNIVERSITY POLITEHNICA OF BUCHAREST   (Romania)

Author keywords

Genomic signals; Molecular analysis; Nucleotide sequences; Phase analysis; Sequence path

Indexed keywords

CHROMOSOMES; DNA; PROTEINS; STATISTICS;

EUKARYOTES; GENOMES; GENOMIC SIGNALS; MOLECULAR ANALYSIS; NUCLEOTIDE SEQUENCES; PHASE ANALYSIS; PROKARYOTES;

NUCLEIC ACID SEQUENCES;

EID: 1342310679     PISSN: 0277786X     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (25)

1. International Human Genome Sequencing Consortium, "Initial sequencing and analysis of the human genome", Nature, 409, pp. 860-911, February 15, 2001.
2. The Genome Data Base, http://gdbwww.gdb.org/
3. Genome Browser, http://genome.ucsc.edu
4. European Informatics Institute, http://www.ebl.ac.uk
5. Ensembl, http://www.ensembl.org.
6. National Center for Biotechnology Information, National Institutes of Health, National Library of Medicine, National Center for Biotechnology Information http://www.ncbi.nlm.nih.gov/geoms/, ftp://ftp.ncbi.nlm.nih.gov/genoms
7. GenBank, http://www.ncbi.nlm.nih.gov/Genbank/index.html.
8. RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium, "Functional annotation of a full-length mouse cDNA collection", Nature, 409, pp. 685-689, February 8, 2001.
9. F.R. Blattner et al., "The complete genome sequence of Escherichia coli K-12", Science, 277 (5331), pp. 1453-1474, 1997.
10. E. Chargaff, "Structure and function of nucleic acids as cell constituents", Fed. Proc., 10, pp. 654-659, 1951.
11. P. Cristea, "Large Scale Features in DNA Genomic Signals", Signal Processing, Special Issue on Genomic Signal Processing, under print, 2002.
12. P. Cristea, "Conversion of Nitrogenous Base Sequences into Genomic Signals", Journal of Cellular and Molecular Medicine, 6, 2, pp. 279-303 April - June 2002.
13. P. Cristea, "Large Scale Features in Prokaryote and Eukaryote Genomic Signals", IWSSIP 2002 - 9th - International Workshop on Systems, Signals and Image Processing, Manchester, UK, November 7-8, 2002.
14. P. Cristea, "Complex Genomic Signals", VIPromCom-2002, 4th EURASIP - IEEE Region 8 International Symposium on Video/Image Processing and Multimedia Communications, Zadar, Croatia, pp. 19-24, June 16-19 2002.
15. P. Cristea, "Independent Component Analysis for Genetic Signals", SPIE Conference, BiOS 2002 - International Biomedical Optics Symposium, SC316, San Jose, USA, January 20-26, 2001, January 21-24, 2002.
16. P. Cristea, "Genetic signal representation and analysis", SPIE Conference, BiOS 2002 - International Biomedical Optics Symposium, Molecular Analysis and Informatics, San Jose, USA, BO 4623-10, January 21-24, 2002.
17. P. Cristea, "Genetic Signal Analysis", ISSPA 2001 - The Sixth International Symposium on Signal Processing and its Applications, Invited Paper, pp. 703-706, Kuala Lumpur, Malaysis, August 13 - 16, 2001.
18. P. Cristea, "Genetic Signals: An Emerging Concept", IWSSIP 2001 - 8th - International Workshop on Systems, Signals and Image Processing, pp. 17-22, Bucharest, June 7-9, 2001.
19. P. Cristea, "Genetic Signals", Rev. Roum. Sci. Techn Electrotechn. et Energ., 46, 2, pp. 189-203, 2001.
20. D. R. Forsdyke, "Sense in Antisense strand of DNA?", Journal of Molecular Evolution, 41, pp. 582-586, 1995.
21. B. Goodner, et al., "Genome Sequence of the Plant Pathogen and Biotechnology Agent Agrobacterium tumefaciens C58", Science, 294 (5550), pp. 2323-2328, 2001.
22. F. Kunst et al., "The complete genome sequence of the gram-positive bacterium Bacillus subtilis", Nature, 390 (6657), pp. 249-256, 1997.
23. Y. Kawarabayashi et al., "Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1", DNA Research, 6 (2), pp. 83-101, 1999.
24. J. Parkhill et al., "Genome sequence of Yersinia pestis, the causative agent of plague", Nature, 413 (6855), pp. 523-527, 2001.
25. J. C. Venter et al., "Draft Analysis of the Human Genome by Celera Genomics", Science, 291, pp. 1304-1351, February 16, 2001, ww.sciencemag.org.